Conferences - Revision history

Diana at 12:53, 25 April 2012

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Diana at 16:39, 24 April 2012

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Diana at 16:37, 24 April 2012

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← Older revision		Revision as of 12:53, 25 April 2012
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	[http://www2.unil.ch/cbg/images/9/97/Programme_book.pdf The programme book of the conference]		[http://www2.unil.ch/cbg/images/9/97/Programme_book.pdf The programme book of the conference]
		+
		+	[http://f1000.com/posters/browse?conferenceId=53853859 F1000 Poster: the open repository for posters and slides]

	[http://www2.unil.ch/cbg/images/3/38/ISCB_Chili_2012_A0.pdf Poster presented at the conference]		[http://www2.unil.ch/cbg/images/3/38/ISCB_Chili_2012_A0.pdf Poster presented at the conference]

← Older revision		Revision as of 16:39, 24 April 2012
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	-[http://www.biotnet.org/ Bioinformatics Training Network (BTN)].This network comprises individuals involved in the provision of bioinformatics training. Our goal is to tackle training challenges in Bioinformatics, build pragmatic solutions to them, and provide mutual support. We encourage the bioinformatics community to join this initiative and to enrich it with their active participation.The BTN is a community-based project aiming to provide a centralised facility to share materials, to list training events (including course contents and trainers), and to share and discuss training experiences.		-[http://www.biotnet.org/ Bioinformatics Training Network (BTN)].This network comprises individuals involved in the provision of bioinformatics training. Our goal is to tackle training challenges in Bioinformatics, build pragmatic solutions to them, and provide mutual support. We encourage the bioinformatics community to join this initiative and to enrich it with their active participation.The BTN is a community-based project aiming to provide a centralised facility to share materials, to list training events (including course contents and trainers), and to share and discuss training experiences.

−	How to organize a virtual conference anywhere: [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829023/?tool=pubmed ten simple rules]	+	-How to organize a virtual conference anywhere: [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829023/?tool=pubmed ten simple rules]

@@ Line 105: / Line 105: @@
 **The role of exon shuffling in shaping protein-protein interaction networks, Douglas V Cancherini,Gustavo S França and Sandro J de Souza,BMV Genomics, 2010
-''Physical protein-protein interaction (PPI) is a critical phenomenon for the function of most proteins in living organisms and a significant fraction of PPIs are the result of domain-domain interactions. Exon shuffling, intron-mediated recombination of exons from existing genes, is known to have been a major mechanism of domain shuffling in metazoans. Thus, we hypothesized that exon shuffling could have a significant influence in shaping the topology of PPI networks.
+''Physical protein-protein interaction (PPI) is a critical phenomenon for the function of most proteins in living organisms and a significant fraction of PPIs are the result of domain-domain interactions. Exon shuffling, intron-mediated recombination of exons from existing genes, is known to have been a major mechanism of domain shuffling in metazoans. Thus, we hypothesized that exon shuffling could have a significant influence in shaping the topology of PPI networks.We tested our hypothesis by compiling exon shuffling and PPI data from six eukaryotic species: Homo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Cryptococcus neoformans and Arabidopsis thaliana. For all four metazoan species, genes enriched in exon shuffling events presented on average higher vertex degree (number of interacting partners) in PPI networks. Furthermore, we verified that a set of protein domains that are simultaneously promiscuous (known to interact to multiple types of other domains), self-interacting (able to interact with another copy of themselves) and abundant in the genomes presents a stronger signal for exon shuffling.Exon shuffling appears to have been a recurrent mechanism for the emergence of new PPIs along metazoan evolution. In metazoan genomes, exon shuffling also promoted the expansion of some protein domains. We speculate that their promiscuous and self-interacting properties may have been decisive for that expansion.''
 We tested our hypothesis by compiling exon shuffling and PPI data from six eukaryotic species: Homo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Cryptococcus neoformans and Arabidopsis thaliana. For all four metazoan species, genes enriched in exon shuffling events presented on average higher vertex degree (number of interacting partners) in PPI networks. Furthermore, we verified that a set of protein domains that are simultaneously promiscuous (known to interact to multiple types of other domains), self-interacting (able to interact with another copy of themselves) and abundant in the genomes presents a stronger signal for exon shuffling.
 Exon shuffling appears to have been a recurrent mechanism for the emergence of new PPIs along metazoan evolution. In metazoan genomes, exon shuffling also promoted the expansion of some protein domains. We speculate that their promiscuous and self-interacting properties may have been decisive for that expansion.''

← Older revision		Revision as of 16:37, 24 April 2012
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	[http://www2.unil.ch/cbg/images/3/38/ISCB_Chili_2012_A0.pdf Poster presented at the conference]		[http://www2.unil.ch/cbg/images/3/38/ISCB_Chili_2012_A0.pdf Poster presented at the conference]

−	* '''Selection of talks'''

		+
		+	* '''Selection of talks'''

	'''"Function prediction at different spatial scales", Peer Bork, EMBL, Heidelberg, Germany'''		'''"Function prediction at different spatial scales", Peer Bork, EMBL, Heidelberg, Germany'''

@@ Line 107: / Line 107: @@
 We tested our hypothesis by compiling exon shuffling and PPI data from six eukaryotic species: Homo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Cryptococcus neoformans and Arabidopsis thaliana. For all four metazoan species, genes enriched in exon shuffling events presented on average higher vertex degree (number of interacting partners) in PPI networks. Furthermore, we verified that a set of protein domains that are simultaneously promiscuous (known to interact to multiple types of other domains), self-interacting (able to interact with another copy of themselves) and abundant in the genomes presents a stronger signal for exon shuffling.
 Exon shuffling appears to have been a recurrent mechanism for the emergence of new PPIs along metazoan evolution. In metazoan genomes, exon shuffling also promoted the expansion of some protein domains. We speculate that their promiscuous and self-interacting properties may have been decisive for that expansion.''
 *  '''Bioinformatics Training and Education in Iberoamerica'''
-Since 90's , bioinformatics research has emerged in Iberoamerica and now high quality research is done.
+Since the 90's , bioinformatics research has emerged in Iberoamerica and now high quality research is done.
 Training can be found at different levels:
@@ Line 119: / Line 120: @@
 -Master studies: research projects, PhD programmes, fellowships are available
--Undergraduate training (most recently): undergraduate programmes with fellowhip possibilities
+-Undergraduate training (most recently):undergraduate programmes with fellowhip possibilities

@@ Line 137: / Line 137: @@
 -[http://www.biotnet.org/ Bioinformatics Training Network (BTN)].This network comprises individuals involved in the provision of bioinformatics training. Our goal is to tackle training challenges in Bioinformatics, build pragmatic solutions to them, and provide mutual support. We encourage the bioinformatics community to join this initiative and to enrich it with their active participation.The BTN is a community-based project aiming to provide a centralised facility to share materials, to list training events (including course contents and trainers), and to share and discuss training experiences.
-How to organize a virtual conference anywhere
+How to organize a virtual conference anywhere: [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829023/?tool=pubmed ten simple rules]
 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829023/?tool=pubmed

@@ Line 115: / Line 115: @@
 Training can be found at different levels:
-- PhD studies/postdoc: research projects, PhD programmes, fellowships are available
+-PhD studies/postdoc: research projects, PhD programmes, fellowships are available
 -Master studies: research projects, PhD programmes, fellowships are available
@@ Line 129: / Line 129: @@
 Future offers will be available in Mexico, Chile and Guatemala
 More info:
 - [http://www.soibio.org/ Iberoamerican Society for Bioinformatics]. It is a joint collaborative project of several research groups from Iberoamerica working in the new field of Bioinformatics and Computational Biology.
 -[http://www.biotnet.org/ Bioinformatics Training Network (BTN)].This network comprises individuals involved in the provision of bioinformatics training. Our goal is to tackle training challenges in Bioinformatics, build pragmatic solutions to them, and provide mutual support. We encourage the bioinformatics community to join this initiative and to enrich it with their active participation.The BTN is a community-based project aiming to provide a centralised facility to share materials, to list training events (including course contents and trainers), and to share and discuss training experiences.
 How to organize a virtual conference anywhere
 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829023/?tool=pubmed

← Older revision		Revision as of 16:30, 24 April 2012
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	* '''Bioinformatics Training and Education in Iberoamerica'''		* '''Bioinformatics Training and Education in Iberoamerica'''
		+
		+	Since 90's , bioinformatics research has been created in Iberoamerica and now it is a high quality research.
		+
		+	The training can be found at different levels:
		+	- PhD studies/postdoc: research projects, PhD programmes, fellowships are available
		+	-Master studies: research projects, PhD programmes, fellowships are available
		+	-Undergraduate training ( most recently): undergraduate programmes with fellowhip possibilities
		+
		+	PhD programmes exist in Brazil (since 2003) and Spain
		+
		+	Masters exist in Costa Rica (since 2011), Spain, portugal, Mexico, Brazil
		+
		+	Undergraduate programmes exist in Mexico (since 2003), Chile, Argentina, Brazil, Potugal
		+
		+	Future offers will becreated in Mexico, Chile and Guatemala
		+
		+	More info:
		+	- [http://www.soibio.org/ Iberoamerican Society for Bioinformatics]. It is a joint collaborative project of several research groups from Iberoamerica working in the new field of Bioinformatics and Computational Biology.
		+	-[http://www.biotnet.org/ Bioinformatics Training Network (BTN)]
		+	This network comprises individuals involved in the provision of bioinformatics training. Our goal is to tackle training challenges in Bioinformatics, build pragmatic solutions to them, and provide mutual support. We encourage the bioinformatics community to join this initiative and to enrich it with their active participation.The BTN is a community-based project aiming to provide a centralised facility to share materials, to list training events (including course contents and trainers), and to share and discuss training experiences.
		+
		+	How to organize a virtual conference anywhere
		+	http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829023/?tool=pubmed