ExpressionView

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ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.
 
ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.
  
= Launch =
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= Launch and download =
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== Launch the ExpressionView Flash applet
 
* [http://maya:7575/ExpressionView/bin/ExpressionView.html Launch ExpressionView]
 
* [http://maya:7575/ExpressionView/bin/ExpressionView.html Launch ExpressionView]
 
* [http://maya:7575/ExpressionView/bin/ExpressionView.html?filename=../data/ALL.small.xml Launch ExpressionView with ALL data (8 modules)]
 
* [http://maya:7575/ExpressionView/bin/ExpressionView.html?filename=../data/ALL.small.xml Launch ExpressionView with ALL data (8 modules)]
 
* [http://maya:7575/ExpressionView/bin/ExpressionView.html?filename=../data/ALL.large.xml Launch ExpressionView with ALL data (108 modules)]
 
* [http://maya:7575/ExpressionView/bin/ExpressionView.html?filename=../data/ALL.large.xml Launch ExpressionView with ALL data (108 modules)]
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== Download the R package (includes the Flash applet)==
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== Download the standalone viewer (adobe AIR) ==
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== Download some sample data ==
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* [[Media:Expressionview.sampledata.all.small.xml|Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 8 modules]]
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* [[Media:Expressionview.sampledata.all.large.xml|Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 108 modules]]
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 +
  
 
= Screenshots =  
 
= Screenshots =  
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image:Expressionview.screenshot.9.png|Experiment description
 
image:Expressionview.screenshot.9.png|Experiment description
 
</gallery>
 
</gallery>
 
= Download =
 
== R package ==
 
== Standalone version of the viewer (adobe AIR) ==
 
== Sample data ==
 
* [[Media:Expressionview.sampledata.all.small.xml|Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 8 modules]]
 
* [[Media:Expressionview.sampledata.all.large.xml|Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 108 modules]]
 
  
 
= Tutorials =
 
= Tutorials =

Revision as of 12:46, 16 November 2009

Screenshot of the ExpressionView applet



ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.

Contents

Launch and download

== Launch the ExpressionView Flash applet

Download the R package (includes the Flash applet)

Download the standalone viewer (adobe AIR)

Download some sample data


Screenshots

Tutorials

There are several tutorials describing how to use ExpressionView:

R package

Flash applet

Additional documentation and downloads