ExpressionView

From Computational Biology Group

(Difference between revisions)
Jump to: navigation, search
(Additional documentation and downloads)
(Download)
Line 22: Line 22:
  
 
= Download =
 
= Download =
 
+
== R package ==
 +
== Standalone version of the viewer (adobe AIR) ==
 +
== Sample data ==
 +
* [[Media:Expressionview.sampledata.all.small.xml|Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 8 modules]]
 +
* [[Media:Expressionview.sampledata.all.large.xml|Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 108 modules]]
  
 
= Tutorials =
 
= Tutorials =

Revision as of 12:51, 16 November 2009

Screenshot of the ExpressionView applet

ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.

Contents

Launch

Screenshots

Download

R package

Standalone version of the viewer (adobe AIR)

Sample data

Tutorials

There are several tutorials describing how to use ExpressionView:

R package

Flash applet

Additional documentation and downloads