ExpressionView

From Computational Biology Group

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== Launch the ExpressionView Flash applet ==  
 
== Launch the ExpressionView Flash applet ==  
 
* [http://maya:7575/ExpressionView/bin/ExpressionView.html Launch ExpressionView]
 
* [http://maya:7575/ExpressionView/bin/ExpressionView.html Launch ExpressionView]
* [http://maya:7575/ExpressionView/bin/ExpressionView.html?filename=../data/ALL.small.evf Launch ExpressionView with ALL data (8 modules)]
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* [http://maya:7575/ExpressionView/bin/ExpressionView.html?filename=../data/ALL.small.evf Launch ExpressionView with adult T-cell acute lymphocytic leukemia (ALL) data (8 modules)]
* [http://maya:7575/ExpressionView/bin/ExpressionView.html?filename=../data/ALL.large.evf Launch ExpressionView with ALL data (108 modules)]
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* [http://maya:7575/ExpressionView/bin/ExpressionView.html?filename=../data/ALL.large.evf Launch ExpressionView with adult T-cell acute lymphocytic leukemia (ALL) data (108 modules)]
  
 
== Download the R package (includes the Flash applet)==
 
== Download the R package (includes the Flash applet)==
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If you prefer a stand-alone viewer, you can download and install the Adobe AIR build [http://maya:7575/ExpressionView/air/ExpressionView.air ExpressionView.air].<br>
 
If you prefer a stand-alone viewer, you can download and install the Adobe AIR build [http://maya:7575/ExpressionView/air/ExpressionView.air ExpressionView.air].<br>
 
To run the program, you need the AIR runtime environment which you can get from [http://get.adobe.com/air Adobe].<br>
 
To run the program, you need the AIR runtime environment which you can get from [http://get.adobe.com/air Adobe].<br>
ExpressionView creates files associations to .evf files, allowing you to simply double-click on such files in order to launch the viewer and load the data.
+
ExpressionView creates files associations to .evf files, allowing you to simply double-click on such files to launch the viewer and load the data.
  
 
== Download some sample data ==
 
== Download some sample data ==

Revision as of 00:04, 18 November 2009

Screenshot of the ExpressionView applet



ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.

Contents

Launch and download

Launch the ExpressionView Flash applet

Download the R package (includes the Flash applet)

Download the stand-alone viewer (adobe AIR)

If you prefer a stand-alone viewer, you can download and install the Adobe AIR build ExpressionView.air.
To run the program, you need the AIR runtime environment which you can get from Adobe.
ExpressionView creates files associations to .evf files, allowing you to simply double-click on such files to launch the viewer and load the data.

Download some sample data

Screenshots

Tutorials

There are several tutorials describing how to use ExpressionView:

R package

Flash applet

Additional documentation and downloads