ExpressionView

From Computational Biology Group

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== Download sample data ==
 
== Download sample data ==
* [http://maya:7575/ExpressionView/data/Expressionview.sampledata.all.small.evf Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 8 modules]
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* [http://maya:7575/ExpressionView/data/Expressionview.sampledata.all.small.evf Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 8 modules] (right-click to download file).
* [http://maya:7575/ExpressionView/Expressionview.sampledata.all.large.evf Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 108 modules]
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* [http://maya:7575/ExpressionView/Expressionview.sampledata.all.large.evf Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 108 modules] (right-click to download file).
  
 
= Screenshots =  
 
= Screenshots =  

Revision as of 11:37, 18 November 2009

Screenshot of the ExpressionView applet



ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.

Contents

Launch and download

Launch the ExpressionView Flash applet

Download the R package (includes the Flash applet)

Download the stand-alone viewer (adobe AIR)

If you prefer a stand-alone viewer, you can download and install the Adobe AIR build ExpressionView.air.
To run the program, you need the AIR runtime environment which you can get from Adobe.
ExpressionView creates files associations to .evf files, allowing you to simply double-click on such files to launch the viewer and load the data.

Download sample data

Screenshots

Tutorials

There are several tutorials describing how to use ExpressionView:

R package

Flash applet

Additional documentation and downloads