Difference between revisions of "Metabomatching"

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to download the metabomatching container. The download may take some time, as the container includes a full Linux OS, octave to run metabomatching, and inkscape to convert metabomatching figures from SVG to PDF. To run metabomatching on the included sample pseudospectrum, run
 
to download the metabomatching container. The download may take some time, as the container includes a full Linux OS, octave to run metabomatching, and inkscape to convert metabomatching figures from SVG to PDF. To run metabomatching on the included sample pseudospectrum, run
  
<code>docker run -i -v <absolute path to results directory>:/mm-ps metabomatching/metabomatching-pre</code>
+
<code>docker run -i -v <absolute/path/to/my/directory>:/mm-ps metabomatching/metabomatching-pre</code>
  
which will run metabomatching, and write results to <code><absolute path to results directory></code>. To run metabomatching on your own pseudospectra, please refer to the documentation. For a system running either Matlab or octave, metabomatching can also be obtained from GitHub
+
which will run metabomatching, and write results to <code><absolute/path/to/my/directory></code>. To run metabomatching on your own pseudospectra, please refer to the documentation. For a system running either Matlab or octave, metabomatching can also be obtained from GitHub
  
 
<code>https://github.com/rrueedi/metabomatching-pre.git</code>
 
<code>https://github.com/rrueedi/metabomatching-pre.git</code>

Revision as of 14:02, 28 October 2016

Metabomatching is a procedure to identify compounds from spectral features that jointly associate with genotypes.

Software

The simplest method to run metabomatching is to use the metabomatching docker image. With a working docker installation (get docker), run

docker pull metabomatching/metabomatching-pre

to download the metabomatching container. The download may take some time, as the container includes a full Linux OS, octave to run metabomatching, and inkscape to convert metabomatching figures from SVG to PDF. To run metabomatching on the included sample pseudospectrum, run

docker run -i -v <absolute/path/to/my/directory>:/mm-ps metabomatching/metabomatching-pre

which will run metabomatching, and write results to <absolute/path/to/my/directory>. To run metabomatching on your own pseudospectra, please refer to the documentation. For a system running either Matlab or octave, metabomatching can also be obtained from GitHub

https://github.com/rrueedi/metabomatching-pre.git


Examples

The procedure was in applied in


Questions, Comments

contact metabomatching(at)unil(dot)ch