Difference between revisions of "Metabomatching"

Line 11: Line 11:
 
<code>docker run -i -v <absolute/path/to/my/directory>:/mm-ps metabomatching/metabomatching-pre</code>
 
<code>docker run -i -v <absolute/path/to/my/directory>:/mm-ps metabomatching/metabomatching-pre</code>
  
which will run metabomatching, and write results to <code><absolute/path/to/my/directory></code>. To run metabomatching on your own pseudospectra, please refer to the documentation [[Media:metabomatching.documentation.20161030.pdf]]. For a system running either Matlab or octave, metabomatching can also be obtained from GitHub
+
which will run metabomatching, and write results to <code><absolute/path/to/my/directory></code>. To run metabomatching on your own pseudospectra, please refer to the documentation ([https://github.com/rrueedi/metabomatching-pre/blob/master/documentation/howto.pdf PDF]). For a system running either Matlab or octave, metabomatching can also be obtained from GitHub
  
 
<code>https://github.com/rrueedi/metabomatching-pre.git</code>
 
<code>https://github.com/rrueedi/metabomatching-pre.git</code>

Revision as of 15:28, 4 November 2016

Metabomatching is a procedure to identify compounds from spectral features that jointly associate with genotypes.

Software

The simplest method to run metabomatching is to use the metabomatching docker image. With a working docker installation (get docker), run

docker pull metabomatching/metabomatching-pre

to download the metabomatching container. The download may take some time, as the container includes a full Linux OS, octave to run metabomatching, and inkscape to convert metabomatching figures from SVG to PDF. To run metabomatching on the included sample pseudospectrum, run

docker run -i -v <absolute/path/to/my/directory>:/mm-ps metabomatching/metabomatching-pre

which will run metabomatching, and write results to <absolute/path/to/my/directory>. To run metabomatching on your own pseudospectra, please refer to the documentation (PDF). For a system running either Matlab or octave, metabomatching can also be obtained from GitHub

https://github.com/rrueedi/metabomatching-pre.git


Examples

The procedure was in applied in


Questions, Comments

contact metabomatching(at)unil(dot)ch