Phylogenetic tree of prokaryotes

(according to NCBI for Archaea and Bacteria)

Search alphabetically

• Archaea
  • Crenarchaeota
    • Desulfurococcales - Aeropyrum pernix
    • Sulfolobales - Sulfolobus solfataricus - Sulfolobus tokodaii
    • Thermoproteales - Pyrobaculum aerophilum strain IM2
  • Euryarchaeota
    • Archaeoglobales - Archaeoglobus fulgidus
    • Halobacteriales - Halobacterium sp. NRC-1
    • Methanobacteriales - Methanobacterium thermoautotrophicum
    • Methanococcales - Methanococcus jannaschii - Methanococcus maripaludis S2
    • Methanopyrales - Methanopyrus kandleri AV19
    • Methanosarcinales - Methanosarcina acetivorans str. C2A - Methanosarcina mazei strain Goe1
    • Thermococcales - Pyrococcus abyssi - Pyrococcus furiosus DSM 3638 - Pyrococcus horikoshii
    • Thermoplasmales - Thermoplasma acidophilum - Thermoplasma volcanium
  • Nanoarchaeota - Nanoarchaeum equitans Kin4-M
• Bacteria
  • Actinobacteria - Bifidobacterium longum NCC2705 - Corynebacterium diphtheriae gravis NCTC13129 - Corynebacterium efficiens YS-314 - Corynebacterium glutamicum ATCC-13032 - Mycobacterium avium k10 - Mycobacterium bovis AF2122/97 - Mycobacterium leprae - Mycobacterium tuberculosis H37Rv - Mycobacterium tuberculosis CDC1551 - Streptomyces avermitilis MA-4680 - Streptomyces coelicolor A3(2) - Tropheryma whipplei TW08 27 - Tropheryma whipplei Twist
  • Aquificales - Aquifex aeolicus
  • Bacteroidetes/Chlorobi group
    • Bacteroidetes - Bacteroides thetaiotaomicron VPI-5482 - Porphyromonas gingivalis W83
    • Chlorobi - Chlorobium tepidum TLS
  • Chlamydiales
    • Chlamydiaceae- Chlamydia trachomatis - Chlamydia muridarum - Chlamydophila caviae GPIC - Chlamydophila pneumoniae CWL029 - Chlamydophila pneumoniae AR39 - Chlamydophila pneumoniae J138 - Chlamydophila pneumoniae TW-183
    • Parachlamydiaceae - Parachlamydia-related symbiont UWE25
  • Cyanobacteria - Gloeobacter violaceus PCC 7421 - Nostoc sp. PCC 7120 - Prochlorococcus marinus CCMP1375 - Prochlorococcus marinus MED4 - Prochlorococcus marinus MIT9313 - Synechococcus sp. WH8102 - Synechocystis PCC6803 - Thermosynechococcus elongatus BP-1
  • Firmicutes
    • Bacilli
      • Bacillaceae - Bacillus anthracis A2012 - Bacillus anthracis Ames - Bacillus cereus ATCC10987 - Bacillus cereus ATCC14579 - Bacillus halodurans - Bacillus subtilis - Oceanobacillus iheyensis
      • Enterococcaceae - Enterococcus faecalis V583
      • Lactobacillaceae - Lactobacillus johnsonii NCC 533 - Lactobacillus plantarum WCFS1 - Lactococcus lactis subsp. lactis
      • Listeriaceae - Listeria innocua - Listeria monocytogenes EGD - Listeria monocytogenes 4b F2365
      • Staphylococcaceae - Staphylococcus aureus subsp. aureus Mu50 - Staphylococcus aureus subsp. aureus N315 - Staphylococcus aureus MW2 - Staphylococcus epidermidis ATCC 12228
      • Streptococcaceae - Streptococcus agalactiae 2603 - Streptococcus agalactiae NEM316 - Streptococcus mutans UA159 - Streptococcus pneumoniae TIGR4 - Streptococcus pneumoniae R6 - Streptococcus pyogenes M1 GAS - Streptococcus pyogenes MGAS315 - Streptococcus pyogenes MGAS8232 - Streptococcus pyogenes SSI-1 M3
    • Clostridia
    • Clostridiaceae - Clostridium acetobutylicum - Clostridium perfringens 13 DNA - Clostridium tetani E88
    • Thermoanaerobacteriaceae - Thermoanaerobacter tengcongensis MB4T
    • Mollicutes
      • Mycoplasmataceae
        • Mycoplasma - Mycoplasma gallisepticum R - Mycoplasma genitalium - Mycoplasma mycoides SC - Mycoplasma penetrans - Mycoplasma pneumoniae - Mycoplasma pulmonis
        • Ureaplasma - Ureaplasma urealyticum
      • Acholeplasmataceae - Onion yellows phytoplasma
  • Fusobacteria
    • Fusobacterales - Fusobacterium nucleatum subsp. nucleatum ATCC 25586
  • Planctomycetes
    • Planctomycetales - Pirellula sp. 1
  • Proteobacteria
    • alpha subdivision
      • Caulobacter Group - Caulobacter crescentus
      • Rhizobiaceae group - Agrobacterium tumefaciens strain C58 circular chromosome  - Agrobacterium tumefaciens strain C58 linear chromosome - Agrobacterium tumefaciens strain C58 (U. Wash) circular chromosome - Agrobacterium tumefaciens strain C58 (U. Wash) linear chromosome - Bradyrhizobium japonicum USDA110 - Brucella melitensis (Chromosome I) - Brucella melitensis (Chromosome II) - Brucella suis 1330 chromosome I - Brucella suis 1330 chromosome II - Mesorhizobium loti - Rhodopseudomonas palustris CGA009 - Sinorhizobium meliloti
      • Rickettsiales - Rickettsia prowazekii Madrid E - Rickettsia conorii Malish 7 - Wolbachia endosymbiont of Drosophila melanogaster
    • beta subdivision
      • Burkholderiales - Ralstonia solanacearum GMI1000 - Bordetella bronchiseptica RB50 - Bordetella parapertussis 12822 - Bordetella pertussis Tohama I
      • Neisseriales - Chromobacterium violaceum ATCC 12472 - Neisseria meningitidis Z2491 (serogroup A) - Neisseria meningitidis MC58 (serogroup B)
      • Nitrosomonadales - Nitrosomonas europaea ATCC 197181
    • gamma subdivision
      • Alteromonadaceae - Shewanella oneidensis MR-1
      • Buchnera - Buchnera aphidicola AP - Buchnera aphidicola BP - Buchnera aphidicola SG
      • Coxiellaceae - Coxiella burnetii RSA 493
      • Enterobacteriaceae - Blochmania floridanus - Escherichia coli K-12 - Escherichia coli O157:H7 - Escherichia coli O157:H7 EDL933 - Escherichia coli UPEC CFT073 - Photorhabdus luminescens TTO1 - Salmonella enterica subsp. enterica serovar Typhi - Salmonella enterica typhi Ty2 - Salmonella typhimurium LT2 - Shigella flexneri 2a 2457T - Shigella flexneri 2a str. 301 - Wigglesworthia brevipalpis - Yersinia pestis biovar Mediaevails str. 91001 - Yersinia pestis strain CO-92 - Yersinia pestis KIM -
      • Pasteurellaceae - Haemophilus ducreyi 35000HP - Haemophilus influenzae Rd - Pasteurella multocida
      • Pseudomonadaceae - Pseudomonas aeruginosa - Pseudomonas putida KT2440 - Pseudomonas syringae pv tomato DC3000
      • Vibrionaceae - Vibrio cholerae Chromosome I - Vibrio cholerae Chromosome II - Vibrio parahaemolyticus RIMD 2210633 chr I - Vibrio parahaemolyticus RIMD 2210633 chr II - Vibrio vulnificus CMCP6 chr I - Vibrio vulnificus CMCP6 chr II - Vibrio vulnificus YJ016 chr I - Vibrio vulnificus YJ016 chr II
      • Xanthomonas group - Xanthomonas axonopodis pv. citri str. 306 - Xanthomonas campestris pv. campestris str. ATCC 33913 - Xylella fastidiosa-grape Temecula1 - Xylella fastidiosa 9a5c
    • delta/epsilon subdivisions - Bdellovibrio bacteriovorus HD100 - Campylobacter jejuni - Desulfovibrio vulgaris subsp. vulgaris Hildenborough - Geobacter sulfurreducens PCA - Helicobacter hepaticus ATCC 51449 - Helicobacter pylori 26695 - Helicobacter pylori J99 - Wolinella succinogenes
  • Spirochaetales
    • Leptospiraceae - Leptospira interrogans serovar copenhageni chromosome I - Leptospira interrogans serovar copenhageni chromosome II - Leptospira interrogans serovar lai str. 56601 chromosome I - Leptospira interrogans serovar lai str. 56601 chromosome II
    • Spirochaetaceae
      • Borrelia - Borrelia burgdorferi
      • Treponema - Treponema denticola ATCC 35405 - Treponema pallidum
• Thermotogales - Thermotoga maritima
• Thermus/Deinococcus group - Deinococcus radiodurans (Chromosome I) - Deinococcus radiodurans (Chromosome II) - Thermus thermophilus HB27