MLtree is a software that implements maximum likelihood estimation of model parameters given a fixed topology with user-defined branch lengths. It includes DNA model of substitution as well as a serie of Markov model designed for 2-states characters.
To download, please click on the Download link in the top menu or here.
For questions, please send an email to wwwphylo [at] unil.ch
When using this software, please cite:P.-A. Christin, G. Besnard, E. Samaratini, M.R. Duvall, T.R. Hodkinson, V. Savolainen and N. Salamin. (2008). Oligocene CO2 decline promoted C4 photosynthesis in grasses. Current Biology 18: 37-48