Publications
2012
Aliscioni S., Bell H. L., Besnard G., Christin P.-A., Columbus J. T., Duvall M. R., Edwards E. J., Giussani L., Hasenstab-Lehman K., Hilu K. W., Hodkinson T. R., Ingram A. L., Kellogg E. A., Mashayekhi S., Morrone O., Osborne C. P., Salamin N., Schaefer H., Spriggs E., Smith S. A., Zuloaga F., Grass Phylogeny Working Group II, 2012. New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins.
New Phytologist
193(2), 304-312. [DOI]
[Web of Science]
[Pubmed]
Christin P.A., Besnard G., Edwards E.J., Salamin N., 2012. Effect of genetic convergence on phylogenetic inference.
Molecular Phylogenetics and Evolution
62(3), 921-927. [DOI]
[Pubmed]
Davies T.J., Kraft N.J.B., Salamin N., Wolkovich E.M., In press. Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism. Ecology. [DOI]
Litsios G., Salamin N., In Press. Effects of Phylogenetic Signal on Ancestral State Reconstruction.
Systematic Biology
. [DOI]
Pellissier L., Litsios G., Fiedler K., Pottier J., Dubuis A., Pradervand J.N., Salamin N., Guisan A., In Press. Loss of interactions with ants under cold climate in a regional myrmecophilous butterfly fauna.
Journal of Biogeography
.
Moretti S, Murri R, Maffioletti S, Kuzniar A, Castella B, Salamin N, Robinson-Rechavi M, Stockinger H, 2012. gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. in Glatard T, Silverstein J (eds.) HealthGrid 2012. IOS Press Books online.
Schabauer H., Valle M., Pacher C., Stockinger H., Stamatakis A., Robinson-Rechavi M., Yang Z., Salamin N., 2012. SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model. in Aluru S., Bader D.A. (eds.) HiCOMB (11th IEEE International Workshop on High Performance Computational Biology). IEEE.
Witsenburg F., Salamin N., Christe P., 2012. The evolutionary host switches of Polychromophilus: a multi-gene phylogeny of the bat malaria genus suggests a second invasion of mammals by a haemosporidian parasite.
Malaria Journal
11(1), 53. [Document]
[DOI]
[Pubmed]
2011
Buerki S., Forest F., Salamin N., Alvarez N., 2011. Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study. Systematic Biology 60(1), 32-44. [DOI] [Web of Science] [Pubmed]
Osborne C.P., Visser V., Freckleton R.P., Simpson D., Clayton D., Barker A., Chapman S., Salamin N., Uren V., GrassPortal Dev Team, 2011. GrassPortal: an online ecological and evolutionary data facility for the grasses. pp.566-566 in Van Staden J. (eds.) South African Journal of Botany.
South African Journal of Botany
77(2). Elsevier. [DOI]
[Web of Science]
Pio D.V., Broennimann O., Barraclough T.G., Reeves G., Rebelo A.G., Thuiller W., Guisan A., Salamin N., 2011. Spatial predictions of phylogenetic diversity in conservation decision making. Conservation Biology 25(6), 1229-1239. [DOI]
[Web of Science]
[Pubmed]
2010
Burri R., Salamin N., Studer R.A., Roulin A., Fumagalli L., 2010. Adaptive divergence of ancient gene duplicates in the avian MHC class II B. Molecular Biology and Evolution 27(10), 2360-2374.
Edwards E.J., Osborne C.P., Strömberg C.A., Smith S.A., Bond W.J., Christin P.A., Cousins A.B., Duvall M.R., Fox D.L., Freckleton R.P., Ghannoum O., Hartwell J., Huang Y., Janis C.M., Keeley J.E., Kellogg E.A., Knapp A.K., Leakey A.D., Nelson D.M., Saarela J.M., Sage R.F., Sala O.E., Salamin N., Still C.J., Tipple B., 2010. The origins of C4 grasslands: integrating evolutionary and ecosystem science. Science 328(5978), 587-591. [DOI] [Pubmed]
Hodkinson T. R., Chonghaile G. N., Sungkaew S., Chase M. W., Salamin N., Stapleton C. M. A., 2010. Phylogenetic analysis of plastid and nuclear DNA sequences reveals a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae).Plant Ecology and Diversity 3(2), 109-120. [DOI] [Web of Science]
Roulin A., Salamin N., 2010. Insularity and the evolution of melanism, sexual dichromatism and body size in the worldwide-distributed barn owl. Journal of Evolutionary Biology 23(5), 925-934. [DOI] [Pubmed]
Salamin N., Wüest R.O., Lavergne S., Thuiller W., Pearman P.B., 2010. Assessing rapid evolution in a changing environment. Trends in Ecology and Evolution 25(12), 692-698. [DOI] [Web of Science] [Pubmed]
2009
Besnard G., Muasya A.M., Russier F., Roalson E.H., Salamin N., Christin P.A., 2009. Phylogenomics of C(4) photosynthesis in sedges (Cyperaceae): multiple appearances and genetic convergence. Molecular biology and evolution 26(8), 1909-1919. [DOI] [Pubmed]
Christin P.A., Petitpierre B., Salamin N., Büchi L., Besnard G., 2009. Evolution of C(4) phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype. Molecular Biology and Evolution 26(2), 357-365. [DOI] [Pubmed]
Christin P.A., Salamin N., Kellogg E.A., Vicentini A., Besnard G., 2009. Integrating phylogeny into studies of C4 variation in the grasses. Plant Physiology 149(1), 82-87. [Document] [DOI] [Pubmed]
Christin P.A., Samaritani E., Petitpierre B., Salamin N., Besnard G., 2009. Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics. Genome Biology and Evolution 2009, 221-230. [Document] [url editor site] [DOI]
Roulin A., Wink M., Salamin N., 2009. Selection on a eumelanic ornament is stronger in the tropics than in temperate zones in the worldwide-distributed barn owl. Journal of Evolutionary Biology 22(2), 345-354. [DOI] [Pubmed]
Sungkaew S., Stapleton C.M., Salamin N., Hodkinson T.R., 01-2009. Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s. Journal of Plant Research 122(1), 95-108. [DOI] [Pubmed]
2008
Bouchenak-Khelladi Y., Salamin N., Savolainen V., Forest F., Bank M., Chase M.W., Hodkinson T.R., 05-2008. Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling. Molecular Phylogenetics and Evolution 47(2), 488-505. [DOI] [Pubmed]
Burri R., Hirzel H.N., Salamin N., Roulin A., Fumagalli L., 2008. Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution. Molecular Biology and Evolution 25(6), 1180-1191. [DOI] [Pubmed]
Christin P.A., Besnard G., Samaritani E., Duvall M.R., Hodkinson T.R., Savolainen V., Salamin N., 2008. Oligocene CO2 decline promoted C4 photosynthesis in grasses. Current Biology 18(1), 37-43. [DOI] [Pubmed]
Christin P.A., Salamin N., Muasya A.M., Roalson E.H., Russier F., Besnard G., 2008. Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis. Molecular Biology and Evolution 25(11), 2361-2368. [DOI] [Pubmed]
Dubey S., Salamin N., Ruedi M., Barrière P., Colyn M., Vogel P., 09-2008. Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 48(3), 953-963. [DOI] [Pubmed]
2007
Christin P.A., Salamin N., Savolainen V., Besnard G., 2007. A phylogenetic study of the phosphoenolpyruvate carboxylase multigene family in Poaceae: understanding the molecular changes linked to C4 photosynthesis evolution. Kew Bulletin 62, 455-462.
Christin P. A., Salamin N., Savolainen V., Duvall M. R., Besnard G., 2007. C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes. Current Biology 17(14), 1241-1247. [DOI] [Pubmed]
Dubey S., Salamin N., Ohdachi S. D., Barriere P., Vogel P., 2007. Molecular phylogenetics of shrews (Mammalia: Soricidae) reveal timing of transcontinental colonizations. Molecular Phylogenetics and Evolution 44(1), 126-37. [DOI] [Pubmed]
Hodkinson T. R., Savolainen V., Jacobs S. W. L., Bouchenak-Khelladi Y., Kinney M. S., Salamin N., 2007. Supersizing: Progress in documenting and understanding grass species richness. pp.275-298 in Hodkinson T. R., Parnell J. A. N. (eds.) Reconstructing the Tree of Life: Taxonomy and systematics of species rich taxa. CRC Press, New York.
Hodkinson T.R., Waldren S., Parnell J.A., Kelleher C.T., Salamin K., Salamin N., 01-2007. DNA banking for plant breeding, biotechnology and biodiversity evaluation. Journal of Plant Research 120(1), 17-29. [DOI] [Pubmed]
2006
Basic N., Salamin N., Keller C., Galland N., Besnard G., 09-2006. Cadmium hyperaccumulation and genetic differentiation of Thlaspi caerulescens populations. Biochemical Systematics and Ecology 34(9), 667-677. [Web of Science]
Donnelly A., Salamin N., Jones M. B., 04-2006. Changes in tree phenology: an indicator of spring warming in Ireland? Biology and Environment: Proceedings of the Irish Royal Academy 106(1), 47-55. [url editor site]
Flannery M.L., Mitchell F.J., Coyne S., Kavanagh T.A., Burke J.I., Salamin N., Dowding P., Hodkinson T.R., 11-2006. Plastid genome characterisation in Brassica and Brassicaceae using a new set of nine SSRs. Theoretical and Applied Genetics 113(7), 1221-1231. [DOI] [Pubmed]
McGrath S., Hodkinson T. R., Salamin N., Barth S., 06-2006. Development and testing of novel chloroplast microsatellite markers for Lolium perenne and other grasses (Poaceae) from de novo sequencing and in silico sequences. Molecular Ecology Notes 6(2), 449-452. [Web of Science]
Savolainen V., Anstett M. C., Lexer C., Hutton I., Clarkson J. J., Norup M. V., Powell M. P., Springate D., Salamin N., Baker W. J., 05-2006. Sympatric speciation in palms on an oceanic island. Nature 441(7090), 210-3. [DOI] [Pubmed]
Savolainen V., Lexer C., Anstett M. C., Hutton I., Clarkson J. J., Norup M. V., Powell M. P., Springate D., Salamin N., Baker W. J., 10-2006. Evolutionary biology - Sympatric plant speciation in islands? Reply. Nature 443(7114). [DOI] [Web of Science]
Strauss S.Y., Webb C.O., Salamin N., 04-2006. Exotic taxa less related to native species are more invasive. Proceedings of the National Academy of Sciences of the United States of America 103(15), 5841-5845. [DOI] [Pubmed]
2005
Chase M.W., Salamin N., Wilkinson M., Dunwell J.M., Kesanakurthi R.P., Haidar N., Savolainen V., 10-2005. Land plants and DNA barcodes: short-term and long-term goals. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360(1462), 1889-1895. [DOI] [Pubmed]
Rønsted N., Weiblen G.D., Cook J.M., Salamin N., Machado C.A., Savolainen V., 12-2005. 60 million years of co-divergence in the fig-wasp symbiosis. Proceedings. Biological Sciences / The Royal Society 272(1581), 2593-2599. [DOI] [Pubmed]
Salamin N., Hodkinson T.R., Savolainen Coates V., 04-2005. Towards building the tree of life: a simulation study for all angiosperm genera. Systematic Biology 54(2), 183-196. [DOI] [Pubmed]
2004
Salamin N., Davies T. J., 2004. Using supertrees to investigate species richness in grasses and flowering plants. pp.461-487 in Bininda-Emonds O. R. P. (eds.) Phylogenetic supertrees. Computational Biology series 4. Kluwer Academic Publishers. [Document]
2003
Salamin N., Chase M.W., Hodkinson T.R., Savolainen V., 06-2003. Assessing internal support with large phylogenetic DNA matrices. Molecular Phylogenetics and Evolution 27(3), 528-539. [Pubmed]
2002
Hodkinson T.R., Chase M.W., Lledó M.D., Salamin N., Renvoize S.A., 10-2002. Phylogenetics of Miscanthus, Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnLintron and trnL-F intergenic spacers. Journal of Plant Research 115(5), 381-392. [DOI] [Pubmed]
