Previous module | Next module Module #330, TG: 3.4, TC: 1.8, 78 probes, 78 Entrez genes, 9 conditions

Help | Hide | Top Expression data


Expression data for module #330

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Under-expression is coded with green, over-expression with red color.

Help | Hide | Top The GO tree — Biological processes

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biological_process

Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

cellular process

Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.

localization

Any process by which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in a specific location.

organelle localization

Any process by which an organelle is transported to, and/or maintained in, a specific location.

cellular localization

Any process by which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell.

all

This term is the most general term possible

cellular localization

Any process by which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell.

Help | Hide | Top The GO tree — Cellular Components

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intracellular

The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

cellular_component

The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

cell

The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

cytoplasmic membrane-bounded vesicle

A membrane-bounded vesicle found in the cytoplasm of the cell.

cytoplasmic vesicle

A vesicle formed of membrane or protein, found in the cytoplasm of a cell.

vesicle

Any small, fluid-filled, spherical organelle enclosed by membrane or protein.

membrane-bounded vesicle

Any small, fluid-filled, spherical organelle enclosed by a lipid bilayer.

melanosome

A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.

organelle

Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

membrane-bounded organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

intracellular organelle

Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

intracellular membrane-bounded organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

intracellular part

Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

cytoplasmic part

Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

cell part

Any constituent part of a cell, the basic structural and functional unit of all organisms.

pigment granule

A small, subcellular membrane-bounded vesicle containing pigment and/or pigment precursor molecules. Pigment granule biogenesis is poorly understood, as pigment granules are derived from multiple sources including the endoplasmic reticulum, coated vesicles, lysosomes, and endosomes.

all

This term is the most general term possible

cell part

Any constituent part of a cell, the basic structural and functional unit of all organisms.

cytoplasmic vesicle

A vesicle formed of membrane or protein, found in the cytoplasm of a cell.

intracellular membrane-bounded organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

intracellular part

Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

intracellular organelle

Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

cytoplasmic membrane-bounded vesicle

A membrane-bounded vesicle found in the cytoplasm of the cell.

cytoplasmic membrane-bounded vesicle

A membrane-bounded vesicle found in the cytoplasm of the cell.

cytoplasmic part

Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

cytoplasmic vesicle

A vesicle formed of membrane or protein, found in the cytoplasm of a cell.

Help | Hide | Top The GO tree — Molecular Function

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Help | Show | Top GO BP test for over-representation

Help | Show | Top GO CC test for over-representation

Help | Show | Top GO MF test for over-representation

Help | Hide | Top KEGG Pathway test for over-representation

No enriched terms

Help | Hide | Top miRNA test for over-representation

No enriched terms

Help | Hide | Top Chromosome test for over-representation

No enriched terms

Help | Hide | Top Genes

Entrez genes

ARF1ADP-ribosylation factor 1 (208750_s_at), score: 0.73 ARHGDIARho GDP dissociation inhibitor (GDI) alpha (213606_s_at), score: 0.76 ATP13A3ATPase type 13A3 (219558_at), score: 0.69 ATP6V1AATPase, H+ transporting, lysosomal 70kDa, V1 subunit A (201971_s_at), score: 0.8 BCL2L1BCL2-like 1 (215037_s_at), score: 0.72 BET1Lblocked early in transport 1 homolog (S. cerevisiae)-like (220470_at), score: 0.69 C19orf6chromosome 19 open reading frame 6 (213986_s_at), score: 0.91 CACNA2D1calcium channel, voltage-dependent, alpha 2/delta subunit 1 (207050_at), score: 0.74 CALUcalumenin (214845_s_at), score: 0.7 CANXcalnexin (208853_s_at), score: 0.74 CD44CD44 molecule (Indian blood group) (210916_s_at), score: 0.82 CDV3CDV3 homolog (mouse) (213548_s_at), score: 0.83 COL1A1collagen, type I, alpha 1 (217430_x_at), score: 0.73 COL6A1collagen, type VI, alpha 1 (212940_at), score: 0.86 COPAcoatomer protein complex, subunit alpha (214336_s_at), score: 1 CPDcarboxypeptidase D (201942_s_at), score: 0.85 CYTH3cytohesin 3 (206523_at), score: 0.67 DAPK3death-associated protein kinase 3 (203890_s_at), score: 0.81 DDX3XDEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked (201211_s_at), score: 0.92 DHX9DEAH (Asp-Glu-Ala-His) box polypeptide 9 (212105_s_at), score: 0.96 DSTdystonin (212253_x_at), score: 0.67 ELK1ELK1, member of ETS oncogene family (210376_x_at), score: 0.78 ERLIN1ER lipid raft associated 1 (202444_s_at), score: 0.71 FGFR1fibroblast growth factor receptor 1 (210973_s_at), score: 0.7 FN1fibronectin 1 (214701_s_at), score: 0.92 GLULglutamate-ammonia ligase (glutamine synthetase) (200648_s_at), score: 0.71 GNSglucosamine (N-acetyl)-6-sulfatase (203676_at), score: 0.75 GPR137G protein-coupled receptor 137 (43934_at), score: 0.81 GTF2Igeneral transcription factor II, i (210892_s_at), score: 0.87 HP1BP3heterochromatin protein 1, binding protein 3 (220633_s_at), score: 0.8 KCTD20potassium channel tetramerisation domain containing 20 (214849_at), score: 0.74 LAMP1lysosomal-associated membrane protein 1 (201551_s_at), score: 0.82 LOC285412similar to KIAA0737 protein (217448_s_at), score: 0.69 LOC730092RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene (216908_x_at), score: 0.77 LSSlanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) (211019_s_at), score: 0.68 MAPK1mitogen-activated protein kinase 1 (208351_s_at), score: 0.67 MAPKAPK2mitogen-activated protein kinase-activated protein kinase 2 (201461_s_at), score: 0.74 MAT2Amethionine adenosyltransferase II, alpha (200769_s_at), score: 0.8 MAXMYC associated factor X (210734_x_at), score: 0.91 MAZMYC-associated zinc finger protein (purine-binding transcription factor) (207824_s_at), score: 0.75 MFN2mitofusin 2 (216205_s_at), score: 0.81 MPDU1mannose-P-dolichol utilization defect 1 (209208_at), score: 0.68 NUMA1nuclear mitotic apparatus protein 1 (214251_s_at), score: 0.76 PAFAH1B1platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa (211547_s_at), score: 0.8 PCDHGA11protocadherin gamma subfamily A, 11 (211876_x_at), score: 0.94 PCDHGA3protocadherin gamma subfamily A, 3 (216352_x_at), score: 0.98 PHTF2putative homeodomain transcription factor 2 (217097_s_at), score: 0.78 PICALMphosphatidylinositol binding clathrin assembly protein (215236_s_at), score: 0.72 PIP5K1Aphosphatidylinositol-4-phosphate 5-kinase, type I, alpha (211205_x_at), score: 0.79 POLDIP3polymerase (DNA-directed), delta interacting protein 3 (215357_s_at), score: 0.82 PPP2R5Dprotein phosphatase 2, regulatory subunit B', delta isoform (211159_s_at), score: 0.68 PRKAB1protein kinase, AMP-activated, beta 1 non-catalytic subunit (201835_s_at), score: 0.67 PRRX1paired related homeobox 1 (205991_s_at), score: 0.75 PTBP1polypyrimidine tract binding protein 1 (212016_s_at), score: 0.99 PTPN14protein tyrosine phosphatase, non-receptor type 14 (205503_at), score: 0.72 PXNpaxillin (211823_s_at), score: 0.85 RAB35RAB35, member RAS oncogene family (205461_at), score: 0.69 RAB5ARAB5A, member RAS oncogene family (206113_s_at), score: 0.85 RAB5CRAB5C, member RAS oncogene family (201156_s_at), score: 0.75 RELAv-rel reticuloendotheliosis viral oncogene homolog A (avian) (209878_s_at), score: 0.68 RRN3RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) (216902_s_at), score: 0.71 RXRBretinoid X receptor, beta (215099_s_at), score: 0.83 SENP3SUMO1/sentrin/SMT3 specific peptidase 3 (215113_s_at), score: 0.67 SEPT11septin 11 (201308_s_at), score: 0.69 SLC12A4solute carrier family 12 (potassium/chloride transporters), member 4 (209401_s_at), score: 0.75 SLC6A9solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (207043_s_at), score: 0.7 SMEK1SMEK homolog 1, suppressor of mek1 (Dictyostelium) (220368_s_at), score: 0.7 SNAP23synaptosomal-associated protein, 23kDa (214544_s_at), score: 0.68 SPPL2Bsignal peptide peptidase-like 2B (215833_s_at), score: 0.68 SRPRsignal recognition particle receptor (docking protein) (200917_s_at), score: 0.77 STIP1stress-induced-phosphoprotein 1 (212009_s_at), score: 0.78 SYPL1synaptophysin-like 1 (201259_s_at), score: 0.75 TGFBR2transforming growth factor, beta receptor II (70/80kDa) (207334_s_at), score: 0.85 TMED2transmembrane emp24 domain trafficking protein 2 (204426_at), score: 0.68 UTRNutrophin (213022_s_at), score: 0.74 WACWW domain containing adaptor with coiled-coil (219679_s_at), score: 0.81 WDR1WD repeat domain 1 (210935_s_at), score: 0.74 YWHAEtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (210317_s_at), score: 0.72

Non-Entrez genes

Unknown, score:

Help | Hide | Top Conditions

Id sample Experiment ExpName Array Syndrome Cell.line
E-TABM-263-raw-cel-1515486031.cel 20 6 Cycle hgu133a2 none Cycle 1
ctrl c 08-03.CEL 3 1 DS-CC hgu133a none DS-CC 3
46B.CEL 2 3 DS-mosaic hgu133plus2 none DS-mosaic 2
4Twin.CEL 4 2 DS-twin hgu133plus2 none DS-twin 4
E-GEOD-3407-raw-cel-1437949655.cel 3 4 Cockayne hgu133a none CSB
47C.CEL 5 3 DS-mosaic hgu133plus2 Down mosaic DS-mosaic 5
47B.CEL 4 3 DS-mosaic hgu133plus2 Down mosaic DS-mosaic 4
E-GEOD-3407-raw-cel-1437949938.cel 8 4 Cockayne hgu133a none CSB
E-GEOD-3407-raw-cel-1437949854.cel 7 4 Cockayne hgu133a CS eGFP

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