Under-expression is coded with green,
over-expression with red color.
multicellular organismal development
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
anatomical structure morphogenesis
The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
embryonic development
The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
embryonic limb morphogenesis
The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping.
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
appendage morphogenesis
The process by which the anatomical structures of appendages are generated and organized. Morphogenesis pertains to the creation of form. An appendage is an organ or part that is attached to the trunk of an organism. For example a limb or a branch.
limb morphogenesis
The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin.
embryonic appendage morphogenesis
The process, occurring in the embryo, by which the anatomical structures of the appendage are generated and organized. Morphogenesis pertains to the creation of form. An appendage is an organ or part that is attached to the trunk of an organism. For example a limb or a branch.
embryonic morphogenesis
The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants.
appendage development
The process whose specific outcome is the progression of an appendage over time, from its formation to the mature structure. An appendage is an organ or part that is attached to the trunk of an organism. For example a limb or a branch.
anatomical structure development
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
limb development
The process whose specific outcome is the progression of a limb over time, from its formation to the mature structure. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin.
all
This term is the most general term possible
multicellular organismal development
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
embryonic development
The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
embryonic morphogenesis
The process by which anatomical structures are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants.
anatomical structure morphogenesis
The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
appendage development
The process whose specific outcome is the progression of an appendage over time, from its formation to the mature structure. An appendage is an organ or part that is attached to the trunk of an organism. For example a limb or a branch.
appendage morphogenesis
The process by which the anatomical structures of appendages are generated and organized. Morphogenesis pertains to the creation of form. An appendage is an organ or part that is attached to the trunk of an organism. For example a limb or a branch.
embryonic appendage morphogenesis
The process, occurring in the embryo, by which the anatomical structures of the appendage are generated and organized. Morphogenesis pertains to the creation of form. An appendage is an organ or part that is attached to the trunk of an organism. For example a limb or a branch.
limb morphogenesis
The process by which the anatomical structures of limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin.
embryonic limb morphogenesis
The process, occurring in the embryo, by which the anatomical structures of the limb are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping.
extracellular region
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
all
This term is the most general term possible
ADAMTS5ADAM metallopeptidase with thrombospondin type 1 motif, 5 (219935_at), score: -0.64 ARNTLaryl hydrocarbon receptor nuclear translocator-like (209824_s_at), score: -0.58 BIN3bridging integrator 3 (222199_s_at), score: -0.59 BNC1basonuclin 1 (206581_at), score: -0.51 C10orf116chromosome 10 open reading frame 116 (203571_s_at), score: -0.51 C4orf31chromosome 4 open reading frame 31 (219747_at), score: -0.81 CAPGcapping protein (actin filament), gelsolin-like (201850_at), score: -0.53 CGBchorionic gonadotropin, beta polypeptide (205387_s_at), score: -1 CH25Hcholesterol 25-hydroxylase (206932_at), score: -0.59 CKBcreatine kinase, brain (200884_at), score: -0.63 CLEC2BC-type lectin domain family 2, member B (209732_at), score: -0.61 COL8A2collagen, type VIII, alpha 2 (221900_at), score: -0.63 COMPcartilage oligomeric matrix protein (205713_s_at), score: -0.74 CST6cystatin E/M (206595_at), score: -0.53 CYP26B1cytochrome P450, family 26, subfamily B, polypeptide 1 (219825_at), score: -0.53 DICER1dicer 1, ribonuclease type III (213229_at), score: 0.64 EIF1AYeukaryotic translation initiation factor 1A, Y-linked (204409_s_at), score: -0.53 EMX2empty spiracles homeobox 2 (221950_at), score: -0.56 FGF13fibroblast growth factor 13 (205110_s_at), score: -0.55 GFRA1GDNF family receptor alpha 1 (205696_s_at), score: -0.64 GLT25D2glycosyltransferase 25 domain containing 2 (209883_at), score: -0.62 GOLIM4golgi integral membrane protein 4 (204324_s_at), score: 0.66 HMOX1heme oxygenase (decycling) 1 (203665_at), score: -0.59 HOXA10homeobox A10 (213150_at), score: -0.51 HOXA11homeobox A11 (213823_at), score: -0.62 HOXA9homeobox A9 (214651_s_at), score: -0.66 IER3immediate early response 3 (201631_s_at), score: 0.7 IMAASLC7A5 pseudogene (208118_x_at), score: -0.67 INHBBinhibin, beta B (205258_at), score: -0.71 IRX5iroquois homeobox 5 (210239_at), score: -0.66 ISLRimmunoglobulin superfamily containing leucine-rich repeat (207191_s_at), score: -0.57 ITPR1inositol 1,4,5-triphosphate receptor, type 1 (203710_at), score: -0.52 KBTBD11kelch repeat and BTB (POZ) domain containing 11 (204301_at), score: -0.63 KRT14keratin 14 (209351_at), score: -0.59 LAPTM5lysosomal multispanning membrane protein 5 (201721_s_at), score: -0.61 LTBP1latent transforming growth factor beta binding protein 1 (202728_s_at), score: 0.65 MEGF6multiple EGF-like-domains 6 (213942_at), score: -0.54 MSL2male-specific lethal 2 homolog (Drosophila) (218733_at), score: -0.55 MSX1msh homeobox 1 (205932_s_at), score: -0.55 NBL1neuroblastoma, suppression of tumorigenicity 1 (37005_at), score: -0.56 NCAM1neural cell adhesion molecule 1 (212843_at), score: -0.77 NCLNnicalin homolog (zebrafish) (222206_s_at), score: -0.6 NDNnecdin homolog (mouse) (209550_at), score: -0.57 PALLDpalladin, cytoskeletal associated protein (200906_s_at), score: 0.63 PBX1pre-B-cell leukemia homeobox 1 (212148_at), score: -0.54 PLAC8placenta-specific 8 (219014_at), score: -0.53 POLR2J2polymerase (RNA) II (DNA directed) polypeptide J2 (216242_x_at), score: -0.54 POMZP3POM (POM121 homolog, rat) and ZP3 fusion (204148_s_at), score: -0.61 PTPRBprotein tyrosine phosphatase, receptor type, B (205846_at), score: -0.71 PTPRRprotein tyrosine phosphatase, receptor type, R (210675_s_at), score: -0.55 RAB11BRAB11B, member RAS oncogene family (34478_at), score: -0.52 RASIP1Ras interacting protein 1 (220027_s_at), score: -0.72 RUNX3runt-related transcription factor 3 (204198_s_at), score: -0.69 SCG5secretogranin V (7B2 protein) (203889_at), score: -0.57 SIRPAsignal-regulatory protein alpha (202897_at), score: -0.52 SLC10A3solute carrier family 10 (sodium/bile acid cotransporter family), member 3 (204928_s_at), score: -0.58 SLC16A5solute carrier family 16, member 5 (monocarboxylic acid transporter 6) (206600_s_at), score: -0.63 SNAI1snail homolog 1 (Drosophila) (219480_at), score: -0.56 SOCS2suppressor of cytokine signaling 2 (203373_at), score: -0.55 STMN2stathmin-like 2 (203000_at), score: -0.51 TACSTD2tumor-associated calcium signal transducer 2 (202286_s_at), score: -0.8 TBX5T-box 5 (207155_at), score: -0.65 THNSL2threonine synthase-like 2 (S. cerevisiae) (219044_at), score: -0.56 TIMP2TIMP metallopeptidase inhibitor 2 (203167_at), score: -0.58
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-3860-raw-cel-1561690360.cel | 12 | 5 | HGPS | hgu133a | none | GM0316B |
| E-GEOD-3860-raw-cel-1561690416.cel | 15 | 5 | HGPS | hgu133a | none | GM0316B |
| E-GEOD-3860-raw-cel-1561690199.cel | 1 | 5 | HGPS | hgu133a | none | GM0316B |
| E-GEOD-3407-raw-cel-1437949704.cel | 4 | 4 | Cockayne | hgu133a | CS | eGFP |
