Under-expression is coded with green,
over-expression with red color.
multicellular organismal development
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
system development
The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process.
anatomical structure development
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
all
This term is the most general term possible
multicellular organismal development
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
system development
The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process.
plasma membrane
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
membrane
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
integral to membrane
Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.
integral to plasma membrane
Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
intrinsic to membrane
Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.
intrinsic to plasma membrane
Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
plasma membrane part
Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
all
This term is the most general term possible
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
plasma membrane part
Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
intrinsic to plasma membrane
Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.
integral to plasma membrane
Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.
ABCG2ATP-binding cassette, sub-family G (WHITE), member 2 (209735_at), score: 0.78 ADAM23ADAM metallopeptidase domain 23 (206046_at), score: 0.61 ANK3ankyrin 3, node of Ranvier (ankyrin G) (206385_s_at), score: 0.76 ANKRD6ankyrin repeat domain 6 (204671_s_at), score: 0.69 AQP1aquaporin 1 (Colton blood group) (209047_at), score: 0.64 ARHGAP29Rho GTPase activating protein 29 (203910_at), score: -0.69 ARL4CADP-ribosylation factor-like 4C (202207_at), score: 0.65 ATF3activating transcription factor 3 (202672_s_at), score: 0.7 CARHSP1calcium regulated heat stable protein 1, 24kDa (218384_at), score: -0.63 CCDC81coiled-coil domain containing 81 (220389_at), score: 0.7 CD55CD55 molecule, decay accelerating factor for complement (Cromer blood group) (201925_s_at), score: -0.75 CORINcorin, serine peptidase (220356_at), score: 0.75 CRLF1cytokine receptor-like factor 1 (206315_at), score: -0.61 CYB5Acytochrome b5 type A (microsomal) (215726_s_at), score: -0.67 CYFIP2cytoplasmic FMR1 interacting protein 2 (215785_s_at), score: 0.78 DAAM2dishevelled associated activator of morphogenesis 2 (212793_at), score: 0.71 DPYSL3dihydropyrimidinase-like 3 (201431_s_at), score: -0.61 EFHD1EF-hand domain family, member D1 (209343_at), score: 0.73 EMP1epithelial membrane protein 1 (201325_s_at), score: -0.64 ENPEPglutamyl aminopeptidase (aminopeptidase A) (204844_at), score: 0.66 EREGepiregulin (205767_at), score: 0.61 FOXE1forkhead box E1 (thyroid transcription factor 2) (206912_at), score: 0.7 FUT8fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (203988_s_at), score: -0.64 GALNT3UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) (203397_s_at), score: 0.62 GPR116G protein-coupled receptor 116 (212950_at), score: 1 HNMThistamine N-methyltransferase (204112_s_at), score: 0.63 HOXB7homeobox B7 (204779_s_at), score: -0.74 ID1inhibitor of DNA binding 1, dominant negative helix-loop-helix protein (208937_s_at), score: -0.73 IRF1interferon regulatory factor 1 (202531_at), score: 0.61 ITGA8integrin, alpha 8 (214265_at), score: 0.9 KALRNkalirin, RhoGEF kinase (206078_at), score: 0.65 KCNE4potassium voltage-gated channel, Isk-related family, member 4 (222379_at), score: 0.67 KCTD12potassium channel tetramerisation domain containing 12 (212192_at), score: -0.67 KLF5Kruppel-like factor 5 (intestinal) (209212_s_at), score: -0.71 LAMA4laminin, alpha 4 (202202_s_at), score: -0.8 LGR5leucine-rich repeat-containing G protein-coupled receptor 5 (213880_at), score: 0.74 LIMCH1LIM and calponin homology domains 1 (212327_at), score: -0.69 LMOD1leiomodin 1 (smooth muscle) (203766_s_at), score: 0.67 LPPR4plasticity related gene 1 (213496_at), score: 0.67 MMP2matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) (201069_at), score: -0.74 MRASmuscle RAS oncogene homolog (206538_at), score: -0.62 MYH10myosin, heavy chain 10, non-muscle (212372_at), score: -0.79 NAP1L3nucleosome assembly protein 1-like 3 (204749_at), score: -0.64 NEFMneurofilament, medium polypeptide (205113_at), score: 0.75 NRXN3neurexin 3 (205795_at), score: 0.65 PARP3poly (ADP-ribose) polymerase family, member 3 (209940_at), score: 0.62 PDLIM3PDZ and LIM domain 3 (209621_s_at), score: 0.7 PLK2polo-like kinase 2 (Drosophila) (201939_at), score: -0.69 PLXNA2plexin A2 (213030_s_at), score: -0.66 PORCNporcupine homolog (Drosophila) (219483_s_at), score: 0.79 PPP1R13Lprotein phosphatase 1, regulatory (inhibitor) subunit 13 like (218849_s_at), score: -0.73 PROCRprotein C receptor, endothelial (EPCR) (203650_at), score: 0.74 PRSS2protease, serine, 2 (trypsin 2) (205402_x_at), score: 0.68 PRSS3protease, serine, 3 (213421_x_at), score: 0.77 PTPRZ1protein tyrosine phosphatase, receptor-type, Z polypeptide 1 (204469_at), score: 0.98 RHBDL2rhomboid, veinlet-like 2 (Drosophila) (219489_s_at), score: -0.74 RPP25ribonuclease P/MRP 25kDa subunit (219143_s_at), score: 0.78 RTN1reticulon 1 (203485_at), score: 0.88 SCN3Asodium channel, voltage-gated, type III, alpha subunit (210432_s_at), score: 0.7 SEPT6septin 6 (212414_s_at), score: -0.62 SIGLEC15sialic acid binding Ig-like lectin 15 (215856_at), score: 0.71 SIM2single-minded homolog 2 (Drosophila) (206558_at), score: 0.84 SIX2SIX homeobox 2 (206510_at), score: 0.69 SLC24A3solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 (57588_at), score: 0.85 SLC7A5solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 (201195_s_at), score: -0.63 SPP1secreted phosphoprotein 1 (209875_s_at), score: 0.72 SYNMsynemin, intermediate filament protein (212730_at), score: 0.65 TBXA2Rthromboxane A2 receptor (336_at), score: 0.7 TEAD3TEA domain family member 3 (209454_s_at), score: 0.64 TRIM34tripartite motif-containing 34 (221044_s_at), score: 0.67 TRPV2transient receptor potential cation channel, subfamily V, member 2 (219282_s_at), score: 0.65 TRY6trypsinogen C (215395_x_at), score: 0.76 TSPYL5TSPY-like 5 (213122_at), score: -0.71 UAP1L1UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 (214755_at), score: 0.62 UBA7ubiquitin-like modifier activating enzyme 7 (203281_s_at), score: 0.61 VAMP8vesicle-associated membrane protein 8 (endobrevin) (202546_at), score: 0.77 ZEB2zinc finger E-box binding homeobox 2 (203603_s_at), score: 0.63 ZFHX4zinc finger homeobox 4 (219779_at), score: -0.62
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-3860-raw-cel-1561690248.cel | 5 | 5 | HGPS | hgu133a | HGPS | AG11513 |
| E-GEOD-3860-raw-cel-1561690480.cel | 18 | 5 | HGPS | hgu133a | HGPS | AG11498 |
| E-GEOD-3860-raw-cel-1561690352.cel | 11 | 5 | HGPS | hgu133a | HGPS | AG11498 |
| E-GEOD-3860-raw-cel-1561690272.cel | 7 | 5 | HGPS | hgu133a | HGPS | AG11498 |
| E-GEOD-3860-raw-cel-1561690231.cel | 4 | 5 | HGPS | hgu133a | HGPS | AG10750 |
| E-GEOD-3860-raw-cel-1561690432.cel | 16 | 5 | HGPS | hgu133a | HGPS | AG10750 |
| E-GEOD-3860-raw-cel-1561690336.cel | 9 | 5 | HGPS | hgu133a | HGPS | AG10750 |
