Under-expression is coded with green,
over-expression with red color.
intracellular
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
endoplasmic reticulum
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
cytoplasm
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
endoplasmic reticulum lumen
The volume enclosed by the membranes of the endoplasmic reticulum.
membrane-enclosed lumen
The enclosed volume within a sealed membrane or between two sealed membranes. Encompasses the volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear envelope lumen.
organelle
Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
membrane-bounded organelle
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular membrane-bounded organelle
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
organelle lumen
The internal volume enclosed by the membranes of a particular organelle; includes the volume enclosed by a single organelle membrane, e.g. endoplasmic reticulum lumen, or the volume enclosed by the innermost of the two lipid bilayers of an organelle envelope, e.g. nuclear lumen.
organelle part
Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
cytoplasmic part
Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
intracellular organelle lumen
An organelle lumen that is part of an intracellular organelle.
all
This term is the most general term possible
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
organelle part
Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
organelle lumen
The internal volume enclosed by the membranes of a particular organelle; includes the volume enclosed by a single organelle membrane, e.g. endoplasmic reticulum lumen, or the volume enclosed by the innermost of the two lipid bilayers of an organelle envelope, e.g. nuclear lumen.
intracellular membrane-bounded organelle
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
intracellular organelle lumen
An organelle lumen that is part of an intracellular organelle.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
cytoplasmic part
Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
endoplasmic reticulum
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
AHSA1AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) (201491_at), score: 0.59 ALG12asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae) (218444_at), score: -0.74 ARHGAP26Rho GTPase activating protein 26 (205068_s_at), score: -0.74 ARHGEF2rho/rac guanine nucleotide exchange factor (GEF) 2 (209435_s_at), score: -0.74 ARL17ADP-ribosylation factor-like 17 (210435_at), score: -0.67 ARMETarginine-rich, mutated in early stage tumors (202655_at), score: -0.78 BAZ1Abromodomain adjacent to zinc finger domain, 1A (217985_s_at), score: 0.6 CELSR1cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) (41660_at), score: -0.67 CHD1chromodomain helicase DNA binding protein 1 (204258_at), score: 0.6 CRELD1cysteine-rich with EGF-like domains 1 (203368_at), score: -0.72 CRELD2cysteine-rich with EGF-like domains 2 (218358_at), score: -0.91 DDIT3DNA-damage-inducible transcript 3 (209383_at), score: -0.86 DHX15DEAH (Asp-Glu-Ala-His) box polypeptide 15 (201386_s_at), score: 0.7 DNAJA1DnaJ (Hsp40) homolog, subfamily A, member 1 (200880_at), score: 0.63 ELL3elongation factor RNA polymerase II-like 3 (219517_at), score: -0.78 EML3echinoderm microtubule associated protein like 3 (212969_x_at), score: 0.6 FCGR2AFc fragment of IgG, low affinity IIa, receptor (CD32) (203561_at), score: -0.68 HERPUD1homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 (217168_s_at), score: -0.83 HSP90B1heat shock protein 90kDa beta (Grp94), member 1 (200598_s_at), score: -0.72 HSPA14heat shock 70kDa protein 14 (219212_at), score: 0.59 HSPA5heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) (211936_at), score: -0.91 HUNKhormonally up-regulated Neu-associated kinase (219535_at), score: -0.68 HYOU1hypoxia up-regulated 1 (200825_s_at), score: -0.91 INHBEinhibin, beta E (210587_at), score: -0.76 IQCGIQ motif containing G (221185_s_at), score: -0.75 LARP4La ribonucleoprotein domain family, member 4 (214155_s_at), score: 0.62 MAP2K6mitogen-activated protein kinase kinase 6 (205698_s_at), score: -0.83 MPImannose phosphate isomerase (202472_at), score: -0.69 MPPED2metallophosphoesterase domain containing 2 (205413_at), score: -0.75 NDRG1N-myc downstream regulated 1 (200632_s_at), score: -0.77 OLIG2oligodendrocyte lineage transcription factor 2 (213825_at), score: -0.72 PAPOLApoly(A) polymerase alpha (212720_at), score: 0.59 PCNXL2pecanex-like 2 (Drosophila) (39650_s_at), score: -0.69 PDIA4protein disulfide isomerase family A, member 4 (211048_s_at), score: -0.81 PHACTR2phosphatase and actin regulator 2 (204048_s_at), score: 0.67 RAG1AP1recombination activating gene 1 activating protein 1 (219125_s_at), score: -0.77 SDF2L1stromal cell-derived factor 2-like 1 (218681_s_at), score: -0.86 SH3BGRSH3 domain binding glutamic acid-rich protein (204979_s_at), score: -1 SLC1A4solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 (209610_s_at), score: -0.68 SLC4A5solute carrier family 4, sodium bicarbonate cotransporter, member 5 (204296_at), score: -0.82 SMA4glucuronidase, beta pseudogene (215599_at), score: -0.67 SMEK1SMEK homolog 1, suppressor of mek1 (Dictyostelium) (220368_s_at), score: 0.63 STIM1stromal interaction molecule 1 (202764_at), score: -0.74 TMEM50Btransmembrane protein 50B (219600_s_at), score: -0.7 TRIB3tribbles homolog 3 (Drosophila) (218145_at), score: -0.94 UBR7ubiquitin protein ligase E3 component n-recognin 7 (putative) (218108_at), score: 0.61 UTP3UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) (209486_at), score: 0.74 VCAM1vascular cell adhesion molecule 1 (203868_s_at), score: -0.68
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-4219-raw-cel-1311956138.cel | 4 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| 3Twin.CEL | 3 | 2 | DS-twin | hgu133plus2 | Down | DS-twin 3 |
| 4Twin.CEL | 4 | 2 | DS-twin | hgu133plus2 | none | DS-twin 4 |
| E-GEOD-3860-raw-cel-1561690272.cel | 7 | 5 | HGPS | hgu133a | HGPS | AG11498 |
