Under-expression is coded with green,
over-expression with red color.
metabolic process
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
transcription
The synthesis of either RNA on a template of DNA or DNA on a template of RNA.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
biosynthetic process
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
macromolecule biosynthetic process
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
cellular process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
gene expression
The process by which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
cellular macromolecule biosynthetic process
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells.
cellular biopolymer metabolic process
The chemical reactions and pathways involving biopolymers, long, repeating chains of monomers found in nature, such as polysaccharides and proteins, as carried out by individual cells.
cellular biopolymer biosynthetic process
The chemical reactions and pathways resulting in the formation of biopolymers, long, repeating chains of monomers found in nature, such as polysaccharides and proteins, as carried out by individual cells.
macromolecule metabolic process
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
biopolymer metabolic process
The chemical reactions and pathways involving biopolymers, long, repeating chains of monomers found in nature, such as polysaccharides and proteins.
biopolymer biosynthetic process
The chemical reactions and pathways resulting in the formation of biopolymers, long, repeating chains of monomers found in nature e.g. polysaccharides and proteins.
cellular metabolic process
The chemical reactions and pathways by which individual cells transform chemical substances.
primary metabolic process
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
cellular biosynthetic process
The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
cellular macromolecule metabolic process
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
all
This term is the most general term possible
cellular metabolic process
The chemical reactions and pathways by which individual cells transform chemical substances.
macromolecule biosynthetic process
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
cellular biosynthetic process
The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
cellular macromolecule metabolic process
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
cellular macromolecule biosynthetic process
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells.
biopolymer biosynthetic process
The chemical reactions and pathways resulting in the formation of biopolymers, long, repeating chains of monomers found in nature e.g. polysaccharides and proteins.
cellular macromolecule biosynthetic process
The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells.
cellular biopolymer metabolic process
The chemical reactions and pathways involving biopolymers, long, repeating chains of monomers found in nature, such as polysaccharides and proteins, as carried out by individual cells.
transcription
The synthesis of either RNA on a template of DNA or DNA on a template of RNA.
cellular biopolymer biosynthetic process
The chemical reactions and pathways resulting in the formation of biopolymers, long, repeating chains of monomers found in nature, such as polysaccharides and proteins, as carried out by individual cells.
cellular biopolymer biosynthetic process
The chemical reactions and pathways resulting in the formation of biopolymers, long, repeating chains of monomers found in nature, such as polysaccharides and proteins, as carried out by individual cells.
transcription
The synthesis of either RNA on a template of DNA or DNA on a template of RNA.
molecular_function
Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
nucleic acid binding
Interacting selectively with any nucleic acid.
DNA binding
Interacting selectively with DNA (deoxyribonucleic acid).
binding
The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
all
This term is the most general term possible
ABCG1ATP-binding cassette, sub-family G (WHITE), member 1 (204567_s_at), score: 0.75 ACOT11acyl-CoA thioesterase 11 (216103_at), score: 0.73 ADORA2Aadenosine A2a receptor (205013_s_at), score: 0.86 AKAP8A kinase (PRKA) anchor protein 8 (203848_at), score: 0.65 ALDOAP2aldolase A, fructose-bisphosphate pseudogene 2 (211617_at), score: 0.78 ALMS1Alstrom syndrome 1 (214707_x_at), score: 0.92 ANKRD10ankyrin repeat domain 10 (218093_s_at), score: 0.73 APBB2amyloid beta (A4) precursor protein-binding, family B, member 2 (212972_x_at), score: 0.97 ARHGEF7Rho guanine nucleotide exchange factor (GEF) 7 (202548_s_at), score: 0.77 BCL9B-cell CLL/lymphoma 9 (204129_at), score: 0.81 BCORBCL6 co-repressor (219433_at), score: 0.63 BTF3L2basic transcription factor 3, like 2 (217461_x_at), score: 0.68 C10orf88chromosome 10 open reading frame 88 (219240_s_at), score: 0.63 C11orf57chromosome 11 open reading frame 57 (218314_s_at), score: 0.8 C12orf35chromosome 12 open reading frame 35 (218614_at), score: 0.63 C12orf49chromosome 12 open reading frame 49 (218867_s_at), score: 0.65 C17orf86chromosome 17 open reading frame 86 (221621_at), score: 0.93 C6orf106chromosome 6 open reading frame 106 (217925_s_at), score: 0.68 C6orf162chromosome 6 open reading frame 162 (213314_at), score: 0.65 CBFA2T2core-binding factor, runt domain, alpha subunit 2; translocated to, 2 (207625_s_at), score: 0.82 CCDC25coiled-coil domain containing 25 (218125_s_at), score: 0.7 CDC14ACDC14 cell division cycle 14 homolog A (S. cerevisiae) (205288_at), score: 0.81 CDKN1Ccyclin-dependent kinase inhibitor 1C (p57, Kip2) (213183_s_at), score: 0.95 CEP27centrosomal protein 27kDa (220071_x_at), score: 0.64 CGGBP1CGG triplet repeat binding protein 1 (214050_at), score: 0.78 CHI3L1chitinase 3-like 1 (cartilage glycoprotein-39) (209395_at), score: 0.76 CIRCBF1 interacting corepressor (209571_at), score: 0.67 CIRBPcold inducible RNA binding protein (200811_at), score: 0.72 CISD3CDGSH iron sulfur domain 3 (213551_x_at), score: 0.83 CNOT6CCR4-NOT transcription complex, subunit 6 (217970_s_at), score: 0.7 CNOT8CCR4-NOT transcription complex, subunit 8 (202163_s_at), score: 0.69 CPEcarboxypeptidase E (201117_s_at), score: 0.73 CREBZFCREB/ATF bZIP transcription factor (202978_s_at), score: 0.69 CYP1A2cytochrome P450, family 1, subfamily A, polypeptide 2 (207608_x_at), score: 0.71 CYP2B6cytochrome P450, family 2, subfamily B, polypeptide 6 (217133_x_at), score: 0.72 DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides (219290_x_at), score: 0.92 DAZ4deleted in azoospermia 4 (216351_x_at), score: 0.71 DDX6DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 (204909_at), score: 0.66 DIP2ADIP2 disco-interacting protein 2 homolog A (Drosophila) (215529_x_at), score: 0.73 DKFZp686O1327hypothetical gene supported by BC043549; BX648102 (216877_at), score: 0.74 DNAH3dynein, axonemal, heavy chain 3 (220725_x_at), score: 0.97 ELK4ELK4, ETS-domain protein (SRF accessory protein 1) (206919_at), score: 0.73 EPB41L1erythrocyte membrane protein band 4.1-like 1 (212339_at), score: 0.87 FAM134Afamily with sequence similarity 134, member A (222129_at), score: 0.83 FAM53Bfamily with sequence similarity 53, member B (203206_at), score: 0.67 FBXL11F-box and leucine-rich repeat protein 11 (208989_s_at), score: 0.74 FBXO41F-box protein 41 (44040_at), score: 0.74 FBXW12F-box and WD repeat domain containing 12 (215600_x_at), score: 0.84 FCARFc fragment of IgA, receptor for (211305_x_at), score: 0.83 FGD6FYVE, RhoGEF and PH domain containing 6 (219901_at), score: 0.7 FKSG49FKSG49 (211454_x_at), score: 0.71 FLJ11292hypothetical protein FLJ11292 (220828_s_at), score: 1 FLJ23172hypothetical LOC389177 (217016_x_at), score: 0.8 FLJ42627hypothetical LOC645644 (220352_x_at), score: 0.71 FNBP4formin binding protein 4 (212232_at), score: 0.83 FUBP1far upstream element (FUSE) binding protein 1 (212847_at), score: 0.73 G3BP1GTPase activating protein (SH3 domain) binding protein 1 (222187_x_at), score: 0.99 GCLCglutamate-cysteine ligase, catalytic subunit (202922_at), score: 0.74 GIGYF2GRB10 interacting GYF protein 2 (212260_at), score: 0.68 GPATCH8G patch domain containing 8 (212485_at), score: 0.7 GTPBP3GTP binding protein 3 (mitochondrial) (213835_x_at), score: 0.74 HCG2P7HLA complex group 2 pseudogene 7 (216229_x_at), score: 0.91 HECAheadcase homolog (Drosophila) (218603_at), score: 0.66 HEY1hairy/enhancer-of-split related with YRPW motif 1 (44783_s_at), score: 0.84 HIC2hypermethylated in cancer 2 (212964_at), score: 0.66 HNRNPDheterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) (213359_at), score: 0.78 HS2ST1heparan sulfate 2-O-sulfotransferase 1 (203285_s_at), score: 0.67 IBD12Inflammatory bowel disease 12 (215373_x_at), score: 0.87 IL1RAPinterleukin 1 receptor accessory protein (205227_at), score: 0.65 IMAASLC7A5 pseudogene (208118_x_at), score: 0.74 INSRinsulin receptor (213792_s_at), score: 0.72 IREB2iron-responsive element binding protein 2 (214666_x_at), score: 0.65 JARID2jumonji, AT rich interactive domain 2 (203297_s_at), score: 0.83 KCNJ14potassium inwardly-rectifying channel, subfamily J, member 14 (220776_at), score: 0.68 KIAA0894KIAA0894 protein (207436_x_at), score: 0.66 KIF1Bkinesin family member 1B (209234_at), score: 0.65 KLF11Kruppel-like factor 11 (218486_at), score: 0.66 KLHL24kelch-like 24 (Drosophila) (206551_x_at), score: 0.65 LETM1leucine zipper-EF-hand containing transmembrane protein 1 (222006_at), score: 0.66 LIMK1LIM domain kinase 1 (204357_s_at), score: 0.68 LOC100128701heterogeneous nuclear ribonucleoprotein A1-like 2 pseudogene (216497_at), score: 0.7 LOC100128836similar to heterogeneous nuclear ribonucleoprotein A1 (217353_at), score: 0.67 LOC100129624hypothetical LOC100129624 (210748_at), score: 0.69 LOC100134401hypothetical protein LOC100134401 (213605_s_at), score: 0.78 LOC152719hypothetical protein LOC152719 (215978_x_at), score: 0.72 LOC171220destrin-2 pseudogene (211325_x_at), score: 0.66 LOC51152melanoma antigen (220771_at), score: 0.65 LOC643313similar to hypothetical protein LOC284701 (211050_x_at), score: 0.92 LOC644617hypothetical LOC644617 (221235_s_at), score: 0.82 LOC645139hypothetical LOC645139 (209064_x_at), score: 0.69 LOC647070hypothetical LOC647070 (215467_x_at), score: 0.9 LOC728844hypothetical LOC728844 (222040_at), score: 0.64 LRP4low density lipoprotein receptor-related protein 4 (212850_s_at), score: 0.69 MAP2K7mitogen-activated protein kinase kinase 7 (216206_x_at), score: 0.84 MAP3K9mitogen-activated protein kinase kinase kinase 9 (213927_at), score: 0.64 MCL1myeloid cell leukemia sequence 1 (BCL2-related) (214057_at), score: 0.68 MDN1MDN1, midasin homolog (yeast) (212693_at), score: 0.63 MEFVMediterranean fever (208262_x_at), score: 0.76 METAP2methionyl aminopeptidase 2 (202015_x_at), score: 0.84 METTL7Amethyltransferase like 7A (211424_x_at), score: 0.89 MFSD11major facilitator superfamily domain containing 11 (221192_x_at), score: 0.75 MLLT10myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (216506_x_at), score: 0.76 MRPL44mitochondrial ribosomal protein L44 (218202_x_at), score: 0.78 NACAnascent polypeptide-associated complex alpha subunit (222018_at), score: 0.73 NPIPL2nuclear pore complex interacting protein-like 2 (221992_at), score: 0.64 OPHN1oligophrenin 1 (206323_x_at), score: 0.73 PARP6poly (ADP-ribose) polymerase family, member 6 (219639_x_at), score: 0.68 PCGF2polycomb group ring finger 2 (203793_x_at), score: 0.82 PDE4Cphosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila) (206792_x_at), score: 0.7 PELI2pellino homolog 2 (Drosophila) (219132_at), score: 0.79 PER2period homolog 2 (Drosophila) (205251_at), score: 0.71 PEX5peroxisomal biogenesis factor 5 (203244_at), score: 0.65 PGFplacental growth factor (215179_x_at), score: 0.7 PIGAphosphatidylinositol glycan anchor biosynthesis, class A (205281_s_at), score: 0.67 PIP4K2Cphosphatidylinositol-5-phosphate 4-kinase, type II, gamma (218942_at), score: 0.75 PMS2CLPMS2 C-terminal like pseudogene (221206_at), score: 0.72 PODNL1podocan-like 1 (220411_x_at), score: 0.67 POGZpogo transposable element with ZNF domain (215281_x_at), score: 0.82 POLR1Bpolymerase (RNA) I polypeptide B, 128kDa (220113_x_at), score: 0.83 POM121L9PPOM121 membrane glycoprotein-like 9 (rat) pseudogene (222253_s_at), score: 0.73 PPARGC1Aperoxisome proliferator-activated receptor gamma, coactivator 1 alpha (219195_at), score: 0.77 PRINSpsoriasis associated RNA induced by stress (non-protein coding) (216051_x_at), score: 0.82 RAD52RAD52 homolog (S. cerevisiae) (205647_at), score: 0.65 RGL1ral guanine nucleotide dissociation stimulator-like 1 (209568_s_at), score: 0.71 RGS5regulator of G-protein signaling 5 (218353_at), score: 0.71 RHEBRas homolog enriched in brain (213409_s_at), score: 0.72 RNMTRNA (guanine-7-) methyltransferase (202683_s_at), score: 0.79 RPL21P37ribosomal protein L21 pseudogene 37 (216479_at), score: 0.85 RPL23AP32ribosomal protein L23a pseudogene 32 (207283_at), score: 0.66 RPL35Aribosomal protein L35a (215208_x_at), score: 0.79 RPS3AP47ribosomal protein S3a pseudogene 47 (216823_at), score: 0.69 RRP15ribosomal RNA processing 15 homolog (S. cerevisiae) (214764_at), score: 0.68 SAP30LSAP30-like (219129_s_at), score: 0.66 SAPS2SAPS domain family, member 2 (202792_s_at), score: 0.76 SAPS3SAPS domain family, member 3 (217928_s_at), score: 0.68 SCARF1scavenger receptor class F, member 1 (206995_x_at), score: 0.63 SCD5stearoyl-CoA desaturase 5 (220232_at), score: 0.8 SCML2sex comb on midleg-like 2 (Drosophila) (206147_x_at), score: 0.68 SETD4SET domain containing 4 (219482_at), score: 0.64 SFRS11splicing factor, arginine/serine-rich 11 (213742_at), score: 0.79 SFRS18splicing factor, arginine/serine-rich 18 (212176_at), score: 0.71 SFTPBsurfactant protein B (214354_x_at), score: 0.66 SH3BP2SH3-domain binding protein 2 (217257_at), score: 0.88 SH3GL3SH3-domain GRB2-like 3 (211565_at), score: 0.97 SKP1S-phase kinase-associated protein 1 (200719_at), score: 0.92 SLC11A1solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 (217473_x_at), score: 0.73 SLC25A44solute carrier family 25, member 44 (32091_at), score: 0.71 SLC30A5solute carrier family 30 (zinc transporter), member 5 (220181_x_at), score: 0.98 SLC35F2solute carrier family 35, member F2 (218826_at), score: 0.7 SLC6A6solute carrier family 6 (neurotransmitter transporter, taurine), member 6 (205921_s_at), score: 0.69 SMEK2SMEK homolog 2, suppressor of mek1 (Dictyostelium) (222270_at), score: 0.67 SNX15sorting nexin 15 (205482_x_at), score: 0.68 SPATA2spermatogenesis associated 2 (204433_s_at), score: 0.83 SPG21spastic paraplegia 21 (autosomal recessive, Mast syndrome) (215383_x_at), score: 0.75 SPINLW1serine peptidase inhibitor-like, with Kunitz and WAP domains 1 (eppin) (206318_at), score: 0.94 SPNsialophorin (206057_x_at), score: 0.99 SPTLC3serine palmitoyltransferase, long chain base subunit 3 (220456_at), score: 0.99 STX3syntaxin 3 (209238_at), score: 0.63 SYCP1synaptonemal complex protein 1 (206740_x_at), score: 0.68 TBC1D15TBC1 domain family, member 15 (218268_at), score: 0.66 TCTN2tectonic family member 2 (206438_x_at), score: 0.82 TIMM8Atranslocase of inner mitochondrial membrane 8 homolog A (yeast) (210800_at), score: 1 TJAP1tight junction associated protein 1 (peripheral) (47608_at), score: 0.64 TMEM38Btransmembrane protein 38B (218772_x_at), score: 0.65 TP53TG3TP53 target 3 (220167_s_at), score: 0.65 TRIM36tripartite motif-containing 36 (219736_at), score: 0.76 TRIT1tRNA isopentenyltransferase 1 (218617_at), score: 0.71 TRPV1transient receptor potential cation channel, subfamily V, member 1 (219632_s_at), score: 0.63 UBAP1ubiquitin associated protein 1 (221490_at), score: 0.66 UBQLN4ubiquilin 4 (222252_x_at), score: 0.87 UGT2B28UDP glucuronosyltransferase 2 family, polypeptide B28 (211682_x_at), score: 0.65 UPP1uridine phosphorylase 1 (203234_at), score: 0.77 USP12ubiquitin specific peptidase 12 (213327_s_at), score: 0.69 VAMP2vesicle-associated membrane protein 2 (synaptobrevin 2) (201557_at), score: 0.97 VEZTvezatin, adherens junctions transmembrane protein (207263_x_at), score: 0.67 XRCC2X-ray repair complementing defective repair in Chinese hamster cells 2 (207598_x_at), score: 0.79 YTHDF1YTH domain family, member 1 (221741_s_at), score: 0.68 ZBTB39zinc finger and BTB domain containing 39 (205256_at), score: 0.88 ZC3H7Bzinc finger CCCH-type containing 7B (206169_x_at), score: 0.91 ZNF160zinc finger protein 160 (214715_x_at), score: 0.7 ZNF253zinc finger protein 253 (206900_x_at), score: 0.62 ZNF432zinc finger protein 432 (219848_s_at), score: 0.7 ZNF440zinc finger protein 440 (215892_at), score: 0.65 ZNF451zinc finger protein 451 (212557_at), score: 0.67 ZNF468zinc finger protein 468 (214751_at), score: 0.64 ZNF492zinc finger protein 492 (215532_x_at), score: 0.74 ZNF506zinc finger protein 506 (221626_at), score: 0.7 ZNF528zinc finger protein 528 (215019_x_at), score: 0.82 ZNF552zinc finger protein 552 (219741_x_at), score: 0.76 ZNF611zinc finger protein 611 (208137_x_at), score: 0.77 ZNF639zinc finger protein 639 (218413_s_at), score: 0.83 ZNF770zinc finger protein 770 (220608_s_at), score: 0.7 ZNF816Azinc finger protein 816A (217541_x_at), score: 0.89 ZSCAN12zinc finger and SCAN domain containing 12 (206507_at), score: 0.78
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-4219-raw-cel-1311956824.cel | 24 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| E-GEOD-4219-raw-cel-1311956358.cel | 10 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| E-GEOD-4219-raw-cel-1311956634.cel | 19 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| E-GEOD-4219-raw-cel-1311956275.cel | 8 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| E-GEOD-4219-raw-cel-1311956398.cel | 12 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| E-GEOD-4219-raw-cel-1311956083.cel | 2 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
