Previous module | Next module Module #745, TG: 2.6, TC: 2, 129 probes, 129 Entrez genes, 5 conditions

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Expression data for module #745

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Under-expression is coded with green, over-expression with red color.

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Help | Hide | Top The GO tree — Cellular Components

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extracellular region

The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

cellular_component

The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

proteinaceous extracellular matrix

A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity.

extracellular matrix

A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants).

extracellular region part

Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.

all

This term is the most general term possible

extracellular region part

Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.

Help | Hide | Top The GO tree — Molecular Function

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Help | Show | Top GO BP test for over-representation

Help | Show | Top GO CC test for over-representation

Help | Show | Top GO MF test for over-representation

Help | Hide | Top KEGG Pathway test for over-representation

Id Pvalue ExpCount Count Size Term
00040 3.057e-02 0.1644 3
13 Pentose and glucuronate interconversions

Help | Hide | Top miRNA test for over-representation

No enriched terms

Help | Hide | Top Chromosome test for over-representation

No enriched terms

Help | Hide | Top Genes

Entrez genes

A2Malpha-2-macroglobulin (217757_at), score: 0.62 ABCB1ATP-binding cassette, sub-family B (MDR/TAP), member 1 (209993_at), score: 1 ABHD14Aabhydrolase domain containing 14A (210006_at), score: -0.52 ACIN1apoptotic chromatin condensation inducer 1 (201715_s_at), score: 0.57 AIM2absent in melanoma 2 (206513_at), score: 0.63 AKAP8LA kinase (PRKA) anchor protein 8-like (218064_s_at), score: 0.53 ANP32Aacidic (leucine-rich) nuclear phosphoprotein 32 family, member A (201043_s_at), score: 0.52 APOBEC3Fapolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F (214995_s_at), score: 0.52 APOBEC3Gapolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G (204205_at), score: 0.52 ATP6V1B2ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 (201089_at), score: 0.59 BAALCbrain and acute leukemia, cytoplasmic (218899_s_at), score: -0.47 BAZ2Abromodomain adjacent to zinc finger domain, 2A (201353_s_at), score: 0.6 BHMT2betaine-homocysteine methyltransferase 2 (219902_at), score: 0.56 C10orf116chromosome 10 open reading frame 116 (203571_s_at), score: -0.45 C3orf64chromosome 3 open reading frame 64 (221935_s_at), score: -0.47 C4orf31chromosome 4 open reading frame 31 (219747_at), score: -0.54 C5orf30chromosome 5 open reading frame 30 (221823_at), score: -0.54 CD24CD24 molecule (266_s_at), score: 0.56 CDR2Lcerebellar degeneration-related protein 2-like (213230_at), score: -0.54 COL11A1collagen, type XI, alpha 1 (37892_at), score: -0.46 COMPcartilage oligomeric matrix protein (205713_s_at), score: -0.44 COPZ2coatomer protein complex, subunit zeta 2 (219561_at), score: -0.44 CRTAPcartilage associated protein (201380_at), score: -0.56 CRYABcrystallin, alpha B (209283_at), score: -0.56 DDX17DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (208151_x_at), score: 0.76 DDX3XDEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked (201211_s_at), score: 0.59 DIO2deiodinase, iodothyronine, type II (203700_s_at), score: 0.62 DUSP14dual specificity phosphatase 14 (203367_at), score: -0.48 ECM1extracellular matrix protein 1 (209365_s_at), score: -0.43 EPHB2EPH receptor B2 (209589_s_at), score: 0.66 FAM108A1family with sequence similarity 108, member A1 (221267_s_at), score: -0.46 FAM169Afamily with sequence similarity 169, member A (213954_at), score: 0.64 FASFas (TNF receptor superfamily, member 6) (204780_s_at), score: -0.45 FAT1FAT tumor suppressor homolog 1 (Drosophila) (201579_at), score: -0.57 FKBP4FK506 binding protein 4, 59kDa (200894_s_at), score: 0.59 FKBP9FK506 binding protein 9, 63 kDa (212169_at), score: -0.68 FOLR3folate receptor 3 (gamma) (206371_at), score: -0.45 GABBR2gamma-aminobutyric acid (GABA) B receptor, 2 (209990_s_at), score: -0.43 GABREgamma-aminobutyric acid (GABA) A receptor, epsilon (204537_s_at), score: 0.53 GAGE4G antigen 4 (207086_x_at), score: 0.95 GAGE6G antigen 6 (208155_x_at), score: 0.91 GAS6growth arrest-specific 6 (202177_at), score: -0.51 GATA3GATA binding protein 3 (209604_s_at), score: 0.78 GHRgrowth hormone receptor (205498_at), score: -0.43 GLSglutaminase (203159_at), score: -0.45 GLTPglycolipid transfer protein (219267_at), score: -0.46 HAS2hyaluronan synthase 2 (206432_at), score: -0.52 HERC5hect domain and RLD 5 (219863_at), score: 0.68 HGSNATheparan-alpha-glucosaminide N-acetyltransferase (218017_s_at), score: -0.58 HIST1H4Chistone cluster 1, H4c (205967_at), score: -0.45 HIVEP2human immunodeficiency virus type I enhancer binding protein 2 (212642_s_at), score: -0.47 HLA-DPA1major histocompatibility complex, class II, DP alpha 1 (211990_at), score: 0.53 HNRNPH1heterogeneous nuclear ribonucleoprotein H1 (H) (213470_s_at), score: 0.54 HRASLSHRAS-like suppressor (219983_at), score: 0.52 HSPA4Lheat shock 70kDa protein 4-like (205543_at), score: 0.53 HSPB2heat shock 27kDa protein 2 (205824_at), score: -0.44 HSPB7heat shock 27kDa protein family, member 7 (cardiovascular) (218934_s_at), score: -0.61 IGFBP3insulin-like growth factor binding protein 3 (212143_s_at), score: -0.47 IPO8importin 8 (205701_at), score: 0.56 IRS2insulin receptor substrate 2 (209185_s_at), score: -0.56 ISLRimmunoglobulin superfamily containing leucine-rich repeat (207191_s_at), score: -0.45 KCNS3potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 (205968_at), score: -0.43 KIAA0495KIAA0495 (213340_s_at), score: -0.5 L1CAML1 cell adhesion molecule (204584_at), score: 0.55 LDOC1leucine zipper, down-regulated in cancer 1 (204454_at), score: -0.49 LOC388796hypothetical LOC388796 (65588_at), score: 0.53 LOC728855hypothetical LOC728855 (222001_x_at), score: 0.59 LRRC2leucine rich repeat containing 2 (219949_at), score: -0.55 LTBP2latent transforming growth factor beta binding protein 2 (204682_at), score: -0.47 M6PRmannose-6-phosphate receptor (cation dependent) (200900_s_at), score: 0.53 MAN2A1mannosidase, alpha, class 2A, member 1 (205105_at), score: -0.54 MARK1MAP/microtubule affinity-regulating kinase 1 (221047_s_at), score: 0.78 MED6mediator complex subunit 6 (207079_s_at), score: 0.52 MFAP5microfibrillar associated protein 5 (213764_s_at), score: -0.56 MITFmicrophthalmia-associated transcription factor (207233_s_at), score: 0.59 MT1P3metallothionein 1 pseudogene 3 (221953_s_at), score: -0.44 MYO1Cmyosin IC (214656_x_at), score: -0.61 NCRNA00084non-protein coding RNA 84 (214657_s_at), score: 0.61 NEFLneurofilament, light polypeptide (221805_at), score: 0.7 NFASCneurofascin homolog (chicken) (213438_at), score: -0.44 NMUneuromedin U (206023_at), score: 0.57 NONOnon-POU domain containing, octamer-binding (208698_s_at), score: 0.58 NRGNneurogranin (protein kinase C substrate, RC3) (204081_at), score: 0.64 OASL2'-5'-oligoadenylate synthetase-like (210797_s_at), score: 0.96 PCLOpiccolo (presynaptic cytomatrix protein) (213558_at), score: 0.52 PDE10Aphosphodiesterase 10A (205501_at), score: 0.58 PDPK13-phosphoinositide dependent protein kinase-1 (204524_at), score: -0.44 PILRBpaired immunoglobin-like type 2 receptor beta (220954_s_at), score: 0.61 PODXLpodocalyxin-like (201578_at), score: -0.51 PPM2Cprotein phosphatase 2C, magnesium-dependent, catalytic subunit (218273_s_at), score: 0.54 PSMB4proteasome (prosome, macropain) subunit, beta type, 4 (202243_s_at), score: -0.6 PTGER3prostaglandin E receptor 3 (subtype EP3) (213933_at), score: -0.55 QPCTglutaminyl-peptide cyclotransferase (205174_s_at), score: -0.5 RAB40BRAB40B, member RAS oncogene family (204547_at), score: -0.55 RABGAP1LRAB GTPase activating protein 1-like (213982_s_at), score: -0.54 RAD23BRAD23 homolog B (S. cerevisiae) (201223_s_at), score: -0.6 RBM3RNA binding motif (RNP1, RRM) protein 3 (222026_at), score: -0.45 REEP1receptor accessory protein 1 (204364_s_at), score: 0.54 RP6-213H19.1serine/threonine protein kinase MST4 (218499_at), score: 0.58 SGCDsarcoglycan, delta (35kDa dystrophin-associated glycoprotein) (213543_at), score: -0.44 SLC16A1solute carrier family 16, member 1 (monocarboxylic acid transporter 1) (209900_s_at), score: -0.43 SLC4A4solute carrier family 4, sodium bicarbonate cotransporter, member 4 (203908_at), score: -0.52 SLC7A11solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 (217678_at), score: 0.53 SMEK1SMEK homolog 1, suppressor of mek1 (Dictyostelium) (220368_s_at), score: 0.6 SNCAsynuclein, alpha (non A4 component of amyloid precursor) (204466_s_at), score: 0.7 SPARCsecreted protein, acidic, cysteine-rich (osteonectin) (212667_at), score: -0.47 SSR3signal sequence receptor, gamma (translocon-associated protein gamma) (217790_s_at), score: -0.47 SYTL2synaptotagmin-like 2 (220613_s_at), score: 0.65 TBC1D8TBC1 domain family, member 8 (with GRAM domain) (204526_s_at), score: 0.53 TCEAL2transcription elongation factor A (SII)-like 2 (211276_at), score: 0.86 TEKTEK tyrosine kinase, endothelial (206702_at), score: -0.5 TERF1telomeric repeat binding factor (NIMA-interacting) 1 (203448_s_at), score: 0.53 TIMP2TIMP metallopeptidase inhibitor 2 (203167_at), score: -0.53 TMEM204transmembrane protein 204 (219315_s_at), score: -0.47 TMEM47transmembrane protein 47 (209656_s_at), score: -0.53 TMOD1tropomodulin 1 (203661_s_at), score: 0.64 TNS1tensin 1 (221748_s_at), score: -0.48 TOB1transducer of ERBB2, 1 (202704_at), score: -0.46 TRIM8tripartite motif-containing 8 (221012_s_at), score: -0.44 TSPAN13tetraspanin 13 (217979_at), score: -0.5 UAP1UDP-N-acteylglucosamine pyrophosphorylase 1 (209340_at), score: -0.53 UBL3ubiquitin-like 3 (201535_at), score: -0.56 UGT1A1UDP glucuronosyltransferase 1 family, polypeptide A1 (207126_x_at), score: 0.88 UGT1A6UDP glucuronosyltransferase 1 family, polypeptide A6 (206094_x_at), score: 0.9 UGT1A9UDP glucuronosyltransferase 1 family, polypeptide A9 (204532_x_at), score: 0.89 USP18ubiquitin specific peptidase 18 (219211_at), score: 0.55 VWA5Avon Willebrand factor A domain containing 5A (210102_at), score: 0.56 WT1Wilms tumor 1 (206067_s_at), score: 0.64 ZNF415zinc finger protein 415 (205514_at), score: -0.46

Non-Entrez genes

Unknown, score:

Help | Hide | Top Conditions

Id sample Experiment ExpName Array Syndrome Cell.line
E-GEOD-3407-raw-cel-1437949854.cel 7 4 Cockayne hgu133a CS eGFP
E-GEOD-3407-raw-cel-1437949938.cel 8 4 Cockayne hgu133a none CSB
E-GEOD-3407-raw-cel-1437949579.cel 2 4 Cockayne hgu133a none CSB
E-GEOD-3407-raw-cel-1437949750.cel 6 4 Cockayne hgu133a CS CSB
E-GEOD-3407-raw-cel-1437949721.cel 5 4 Cockayne hgu133a CS CSB

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