Under-expression is coded with green,
over-expression with red color.
cell morphogenesis
The developmental process by which the size or shape of a cell is generated and organized. Morphogenesis pertains to the creation of form.
skeletal system development
The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
ossification
The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
multicellular organismal development
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
anatomical structure morphogenesis
The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
tissue development
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
nervous system development
The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
cellular component organization
A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a cellular component.
bone mineralization
The deposition of calcium phosphate in bone tissue.
biomineral formation
Formation of hard tissues that consist mainly of inorganic compounds, and also contain a small amounts of organic matrices that are believed to play important roles in their formation.
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
cellular structure morphogenesis
The process by which cellular structures are generated and organized. Morphogenesis pertains to the creation of form.
organ development
Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
system development
The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process.
anatomical structure development
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
cellular developmental process
A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition.
bone development
The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components.
all
This term is the most general term possible
multicellular organismal development
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
cellular developmental process
A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition.
cellular structure morphogenesis
The process by which cellular structures are generated and organized. Morphogenesis pertains to the creation of form.
cellular structure morphogenesis
The process by which cellular structures are generated and organized. Morphogenesis pertains to the creation of form.
anatomical structure morphogenesis
The process by which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
system development
The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process.
organ development
Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
tissue development
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
ossification
The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
bone development
The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components.
bone mineralization
The deposition of calcium phosphate in bone tissue.
extracellular region
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
all
This term is the most general term possible
ANK3ankyrin 3, node of Ranvier (ankyrin G) (206385_s_at), score: 0.79 ANKRD1ankyrin repeat domain 1 (cardiac muscle) (206029_at), score: 0.81 AUTS2autism susceptibility candidate 2 (212599_at), score: -0.8 BACE2beta-site APP-cleaving enzyme 2 (217867_x_at), score: -0.69 BST1bone marrow stromal cell antigen 1 (205715_at), score: 0.8 C1orf54chromosome 1 open reading frame 54 (219506_at), score: 0.79 CAMK2N1calcium/calmodulin-dependent protein kinase II inhibitor 1 (218309_at), score: -0.9 CAPGcapping protein (actin filament), gelsolin-like (201850_at), score: -0.7 CCDC81coiled-coil domain containing 81 (220389_at), score: 0.75 CDH4cadherin 4, type 1, R-cadherin (retinal) (206866_at), score: -0.68 COL4A5collagen, type IV, alpha 5 (213110_s_at), score: 0.71 CTSCcathepsin C (201487_at), score: 0.72 ENPP1ectonucleotide pyrophosphatase/phosphodiesterase 1 (205066_s_at), score: -0.72 EPHA5EPH receptor A5 (215664_s_at), score: 0.83 F2Rcoagulation factor II (thrombin) receptor (203989_x_at), score: 0.82 FOXE1forkhead box E1 (thyroid transcription factor 2) (206912_at), score: 0.72 FSTfollistatin (204948_s_at), score: 0.77 GABBR2gamma-aminobutyric acid (GABA) B receptor, 2 (209990_s_at), score: -0.68 GALNT3UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) (203397_s_at), score: 0.72 GPR116G protein-coupled receptor 116 (212950_at), score: 1 HMOX1heme oxygenase (decycling) 1 (203665_at), score: -0.72 HS3ST3A1heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 (219985_at), score: -0.86 ISLRimmunoglobulin superfamily containing leucine-rich repeat (207191_s_at), score: -0.79 ITGA7integrin, alpha 7 (216331_at), score: 0.74 ITGA8integrin, alpha 8 (214265_at), score: 0.72 JAG1jagged 1 (Alagille syndrome) (216268_s_at), score: 0.86 KALRNkalirin, RhoGEF kinase (206078_at), score: 0.76 KCNE4potassium voltage-gated channel, Isk-related family, member 4 (222379_at), score: 0.73 KCNN4potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 (204401_at), score: -0.7 KLF9Kruppel-like factor 9 (203543_s_at), score: 0.71 KRT18keratin 18 (201596_x_at), score: 0.74 LGALS3BPlectin, galactoside-binding, soluble, 3 binding protein (200923_at), score: 0.74 LMO2LIM domain only 2 (rhombotin-like 1) (204249_s_at), score: 0.87 LPHN2latrophilin 2 (206953_s_at), score: 0.82 LPXNleupaxin (216250_s_at), score: -0.73 LRRC15leucine rich repeat containing 15 (213909_at), score: -0.85 LRRC17leucine rich repeat containing 17 (205381_at), score: 0.77 MBPmyelin basic protein (210136_at), score: 0.89 MEOX2mesenchyme homeobox 2 (206201_s_at), score: 0.96 MESTmesoderm specific transcript homolog (mouse) (202016_at), score: 0.78 MGPmatrix Gla protein (202291_s_at), score: 0.87 MMP2matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) (201069_at), score: -0.77 MSX1msh homeobox 1 (205932_s_at), score: -0.74 NBL1neuroblastoma, suppression of tumorigenicity 1 (37005_at), score: -0.71 NDNnecdin homolog (mouse) (209550_at), score: -0.69 NDUFA4L2NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 (218484_at), score: 0.79 NEFMneurofilament, medium polypeptide (205113_at), score: 0.72 NET1neuroepithelial cell transforming 1 (201830_s_at), score: -0.73 NID2nidogen 2 (osteonidogen) (204114_at), score: 0.72 NKX3-1NK3 homeobox 1 (209706_at), score: -0.74 NOVnephroblastoma overexpressed gene (214321_at), score: 0.75 NRG1neuregulin 1 (206343_s_at), score: -0.7 NRXN3neurexin 3 (205795_at), score: 0.84 PBX1pre-B-cell leukemia homeobox 1 (212148_at), score: -0.67 PDE10Aphosphodiesterase 10A (205501_at), score: 0.74 PLA2G16phospholipase A2, group XVI (209581_at), score: 0.71 PNMA2paraneoplastic antigen MA2 (209598_at), score: 0.81 PRKAG2protein kinase, AMP-activated, gamma 2 non-catalytic subunit (218292_s_at), score: 0.73 PTPRZ1protein tyrosine phosphatase, receptor-type, Z polypeptide 1 (204469_at), score: 0.96 RELNreelin (205923_at), score: 0.87 RGS7regulator of G-protein signaling 7 (206290_s_at), score: 0.76 RTN1reticulon 1 (203485_at), score: 0.77 SGCDsarcoglycan, delta (35kDa dystrophin-associated glycoprotein) (213543_at), score: -0.71 SLC24A3solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 (57588_at), score: 0.81 SLC25A4solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 (202825_at), score: 0.74 SLC7A8solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 (216092_s_at), score: -0.82 SOBPsine oculis binding protein homolog (Drosophila) (218974_at), score: 0.73 SORBS2sorbin and SH3 domain containing 2 (204288_s_at), score: 0.75 SRGNserglycin (201859_at), score: 0.71 SSX2IPsynovial sarcoma, X breakpoint 2 interacting protein (203016_s_at), score: -0.68 STMN2stathmin-like 2 (203000_at), score: -0.7 TFPItissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) (209676_at), score: 0.74 TINAGL1tubulointerstitial nephritis antigen-like 1 (219058_x_at), score: 0.84 TMEM158transmembrane protein 158 (213338_at), score: -0.89 TNXAtenascin XA pseudogene (213451_x_at), score: 0.85 TNXBtenascin XB (216333_x_at), score: 0.85 TUFT1tuftelin 1 (205807_s_at), score: 0.72 ZNF423zinc finger protein 423 (214761_at), score: 0.92 ZNF536zinc finger protein 536 (206403_at), score: -0.72
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-3860-raw-cel-1561690256.cel | 6 | 5 | HGPS | hgu133a | none | GMO8398C |
| E-GEOD-3860-raw-cel-1561690360.cel | 12 | 5 | HGPS | hgu133a | none | GM0316B |
| E-GEOD-3860-raw-cel-1561690223.cel | 3 | 5 | HGPS | hgu133a | none | GM00038C |
| E-GEOD-3860-raw-cel-1561690392.cel | 14 | 5 | HGPS | hgu133a | none | GMO8398C |
| E-GEOD-3860-raw-cel-1561690344.cel | 10 | 5 | HGPS | hgu133a | none | GM00038C |
| E-GEOD-3860-raw-cel-1561690472.cel | 17 | 5 | HGPS | hgu133a | none | GM00038C |
| E-GEOD-3860-raw-cel-1561690304.cel | 8 | 5 | HGPS | hgu133a | none | GMO8398C |
| E-GEOD-3860-raw-cel-1561690248.cel | 5 | 5 | HGPS | hgu133a | HGPS | AG11513 |
| E-GEOD-3860-raw-cel-1561690416.cel | 15 | 5 | HGPS | hgu133a | none | GM0316B |
| E-GEOD-3860-raw-cel-1561690432.cel | 16 | 5 | HGPS | hgu133a | HGPS | AG10750 |
| E-GEOD-3860-raw-cel-1561690231.cel | 4 | 5 | HGPS | hgu133a | HGPS | AG10750 |
| E-GEOD-3860-raw-cel-1561690336.cel | 9 | 5 | HGPS | hgu133a | HGPS | AG10750 |
