Previous module | Next module Module #333, TG: 2.4, TC: 1, 40 probes, 40 Entrez genes, 35 conditions

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Expression data for module #333

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Under-expression is coded with green, over-expression with red color.

Help | Hide | Top The GO tree — Biological processes

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organelle organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

peroxisome organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.

biological_process

Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

cellular process

Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.

cellular component organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.

all

NA

organelle organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

Help | Hide | Top The GO tree — Cellular Components

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intracellular

The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

peroxisome

A small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2).

cellular_component

The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

cell

The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

microbody

Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2).

organelle

Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.

membrane-bounded organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

intracellular organelle

Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

intracellular membrane-bounded organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

intracellular part

Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

cytoplasmic part

Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

cell part

Any constituent part of a cell, the basic structural and functional unit of all organisms.

all

NA

cell part

Any constituent part of a cell, the basic structural and functional unit of all organisms.

intracellular membrane-bounded organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

intracellular part

Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

intracellular organelle

Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

cytoplasmic part

Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

microbody

Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2).

Help | Hide | Top The GO tree — Molecular Function

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Help | Show | Top GO BP test for over-representation

Help | Show | Top GO CC test for over-representation

Help | Show | Top GO MF test for over-representation

Help | Hide | Top KEGG Pathway test for over-representation

Id Pvalue ExpCount Count Size Term
04146 6.761e-03 0.2714 4
30 Peroxisome

Help | Hide | Top miRNA test for over-representation

No enriched terms

Help | Hide | Top Chromosome test for over-representation

No enriched terms

Help | Hide | Top Genes

Entrez genes

ABCD3ATP-binding cassette, sub-family D (ALD), member 3 (ENSG00000117528), score: 0.92 ABI2abl-interactor 2 (ENSG00000138443), score: -0.8 ACER2alkaline ceramidase 2 (ENSG00000177076), score: 0.72 AVPR1Aarginine vasopressin receptor 1A (ENSG00000166148), score: 0.69 BBS2Bardet-Biedl syndrome 2 (ENSG00000125124), score: -0.77 BPNT13'(2'), 5'-bisphosphate nucleotidase 1 (ENSG00000162813), score: 0.73 CAPRIN2caprin family member 2 (ENSG00000110888), score: -0.86 CCBL2cysteine conjugate-beta lyase 2 (ENSG00000137944), score: 0.72 CCDC92coiled-coil domain containing 92 (ENSG00000119242), score: -1 CCRL1chemokine (C-C motif) receptor-like 1 (ENSG00000129048), score: 0.91 CDK8cyclin-dependent kinase 8 (ENSG00000132964), score: 0.73 CNR2cannabinoid receptor 2 (macrophage) (ENSG00000188822), score: 0.91 DLSTdihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) (ENSG00000119689), score: 0.68 ETFDHelectron-transferring-flavoprotein dehydrogenase (ENSG00000171503), score: 0.75 FBXO3F-box protein 3 (ENSG00000110429), score: 0.79 FEZ1fasciculation and elongation protein zeta 1 (zygin I) (ENSG00000149557), score: -0.81 GCLMglutamate-cysteine ligase, modifier subunit (ENSG00000023909), score: 0.72 H1FXH1 histone family, member X (ENSG00000184897), score: -0.78 LCLAT1lysocardiolipin acyltransferase 1 (ENSG00000172954), score: 0.76 MFN1mitofusin 1 (ENSG00000171109), score: 0.74 MMP13matrix metallopeptidase 13 (collagenase 3) (ENSG00000137745), score: 0.69 NDUFA6NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa (ENSG00000184983), score: 0.72 NECAB3N-terminal EF-hand calcium binding protein 3 (ENSG00000125967), score: -0.95 NUDT19nudix (nucleoside diphosphate linked moiety X)-type motif 19 (ENSG00000213965), score: 0.93 P4HTMprolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) (ENSG00000178467), score: -0.85 PANK1pantothenate kinase 1 (ENSG00000152782), score: 0.8 PEX11Aperoxisomal biogenesis factor 11 alpha (ENSG00000166821), score: 0.83 PEX7peroxisomal biogenesis factor 7 (ENSG00000112357), score: 0.73 PM20D1peptidase M20 domain containing 1 (ENSG00000162877), score: 0.77 PPP2R5Aprotein phosphatase 2, regulatory subunit B', alpha (ENSG00000066027), score: 0.75 SLC16A10solute carrier family 16, member 10 (aromatic amino acid transporter) (ENSG00000112394), score: 0.83 SLC25A16solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (ENSG00000122912), score: 0.72 SLC6A6solute carrier family 6 (neurotransmitter transporter, taurine), member 6 (ENSG00000131389), score: 0.72 SLC7A6solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 (ENSG00000103064), score: -0.81 SMARCA1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (ENSG00000102038), score: -0.89 TMEM106Btransmembrane protein 106B (ENSG00000106460), score: 0.75 TMEM135transmembrane protein 135 (ENSG00000166575), score: 0.79 UBR2ubiquitin protein ligase E3 component n-recognin 2 (ENSG00000024048), score: 0.78 UBXN2AUBX domain protein 2A (ENSG00000173960), score: 0.7 WDR89WD repeat domain 89 (ENSG00000140006), score: 0.69

Non-Entrez genes

Unknown, score:

Help | Hide | Top Conditions

Id species tissue sex individual
hsa_br_m7_ca1 hsa br m 7
hsa_br_m3_ca1 hsa br m 3
ppa_br_f1_ca1 ppa br f 1
ptr_br_m3_ca1 ptr br m 3
hsa_br_m6_ca1 hsa br m 6
ptr_br_m1_ca1 ptr br m 1
ptr_br_m2_ca1 ptr br m 2
ptr_br_f_ca1 ptr br f _
hsa_cb_f_ca1 hsa cb f _
hsa_ts_m1_ca1 hsa ts m 1
ggo_br_f_ca1 ggo br f _
ptr_br_m5_ca1 ptr br m 5
ggo_br_m_ca1 ggo br m _
ppy_br_m_ca1 ppy br m _
hsa_ts_m2_ca1 hsa ts m 2
hsa_cb_m_ca1 hsa cb m _
hsa_br_f_ca1 hsa br f _
gga_lv_f_ca1 gga lv f _
mdo_ht_f_ca1 mdo ht f _
mdo_ht_m_ca1 mdo ht m _
mdo_kd_m_ca1 mdo kd m _
mdo_kd_f_ca1 mdo kd f _
oan_lv_m_ca1 oan lv m _
oan_lv_f_ca1 oan lv f _
mmu_ht_f_ca1 mmu ht f _
mmu_ht_m2_ca1 mmu ht m 2
mmu_ht_m1_ca1 mmu ht m 1
mdo_lv_f_ca1 mdo lv f _
mmu_kd_f_ca1 mmu kd f _
mdo_lv_m_ca1 mdo lv m _
mmu_kd_m2_ca1 mmu kd m 2
mmu_kd_m1_ca1 mmu kd m 1
mmu_lv_m1_ca1 mmu lv m 1
mmu_lv_f_ca1 mmu lv f _
mmu_lv_m2_ca1 mmu lv m 2

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