http://www2.unil.ch/cbg/api.php?action=feedcontributions&user=Micha&feedformat=atom
CBG - User contributions [en]
2024-03-29T14:48:00Z
User contributions
MediaWiki 1.31.12
http://www2.unil.ch/cbg/index.php?title=User:Micha&diff=6534
User:Micha
2023-05-02T07:33:29Z
<p>Micha: </p>
<hr />
<div><br />
[[File:Micha.jpg|100px|thumb|left|Micha Hersch]] <br />
<br />
'''Senior Researcher'''<br />
* email: micha.hersch at hepl.ch<br />
<br />
* personal web page: http://mhers.ch<br />
<br />
=== Current position ===<br />
<br />
I am now associate professor at the Vaud University of Teacher Education [https://www.hepl.ch (HEP Vaud)], where I am involved in computer science education.<br />
<br />
=== Research ===<br />
I am mainly interested in understanding, through a combination of mathematical modeling and experiments and data analysis, how biological systems can robustly self-regulate their behavior. <br />
I studied this in the context of the gene [[regulatory network of the shade avoidance]] mechanism in the model plant Arabidopsis Thaliana and in the context of [[robust gradient formation]] for cell size determination in the fission yeast. <br />
<br />
I also did some genome-wide data analysis related to human genetics, for example [[Genome Wide Association Studies]], and another one showing the [[gender bias in neurodevelopmental disorders | higher resilience of females to mutations in genes involved in neuro-developmental disorders]] such as autism.<br />
<br />
My scientific interests include dynamical systems theory, self-organization, statistical learning theory and large-scale biological data analysis. For additional information, you can consult my [http://people.unil.ch/michahersch/ web page].<br />
<br />
I did my ph.D at the [http://lasa.epfl.ch lasa (EPFL)], where I worked on bio-inspired motor control and artificial cognition for humanoid robots.<br />
<br />
And before this, I worked on automatic speech recognition at the [http://www.icsi.berkeley.edu/ International Computer Science Institute] in Berkeley.<br />
<br />
Beside research and teaching, I also did data analysis and consulting for the private sector. <br />
<br />
=== Academic titles ===<br />
<br />
* 2009: [http://library.epfl.ch/en/theses/?nr=4289 Phd in cognitive robotics], [http://lasa.epfl.ch LASA], EPFL<br />
* 2004: [http://lumiere.ens.fr/~cogmaster/www/ Master in cognitive science], [http://www.upmc.fr Université Paris VI]<br />
* 2003: Master in computer science, [http://www.epfl.ch EPFL]<br />
<br />
=== Publications ===<br />
Look [http://people.unil.ch/michahersch/publications here]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=User:Micha&diff=6533
User:Micha
2023-05-02T07:31:43Z
<p>Micha: </p>
<hr />
<div><br />
[[File:Micha.jpg|100px|thumb|left|Micha Hersch]] <br />
<br />
'''Senior Researcher'''<br />
* email: micha.hersch at unil.ch<br />
<br />
* personal web page: http://mhers.ch<br />
<br />
=== Current position ===<br />
<br />
I am now associate professor at the Vaud University of Teacher Education [https://www.hepl.ch (HEP Vaud)], where I am involved in computer science education.<br />
<br />
=== Research ===<br />
I am mainly interested in understanding, through a combination of mathematical modeling and experiments and data analysis, how biological systems can robustly self-regulate their behavior. <br />
I studied this in the context of the gene [[regulatory network of the shade avoidance]] mechanism in the model plant Arabidopsis Thaliana and in the context of [[robust gradient formation]] for cell size determination in the fission yeast. <br />
<br />
I also did some genome-wide data analysis related to human genetics, for example [[Genome Wide Association Studies]], and another one showing the [[gender bias in neurodevelopmental disorders | higher resilience of females to mutations in genes involved in neuro-developmental disorders]] such as autism.<br />
<br />
My scientific interests include dynamical systems theory, self-organization, statistical learning theory and large-scale biological data analysis. For additional information, you can consult my [http://people.unil.ch/michahersch/ web page].<br />
<br />
I did my ph.D at the [http://lasa.epfl.ch lasa (EPFL)], where I worked on bio-inspired motor control and artificial cognition for humanoid robots.<br />
<br />
And before this, I worked on automatic speech recognition at the [http://www.icsi.berkeley.edu/ International Computer Science Institute] in Berkeley.<br />
<br />
Beside research and teaching, I also did data analysis and consulting for the private sector. <br />
<br />
=== Academic titles ===<br />
<br />
* 2009: [http://library.epfl.ch/en/theses/?nr=4289 Phd in cognitive robotics], [http://lasa.epfl.ch LASA], EPFL<br />
* 2004: [http://lumiere.ens.fr/~cogmaster/www/ Master in cognitive science], [http://www.upmc.fr Université Paris VI]<br />
* 2003: Master in computer science, [http://www.epfl.ch EPFL]<br />
<br />
=== Publications ===<br />
Look [http://people.unil.ch/michahersch/publications here]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=User:Micha&diff=6532
User:Micha
2023-05-02T07:31:01Z
<p>Micha: </p>
<hr />
<div><br />
[[File:Micha.jpg|100px|thumb|left|Micha Hersch]] <br />
<br />
'''Senior Researcher'''<br />
* email: micha.hersch at unil.ch<br />
<br />
* personal web page: http://mhers.ch<br />
<br />
=== Current position ===<br />
<br />
I am now associate professor at the Vaud University of Teacher Education [ https://www.hepl.ch (HEP Vaud)], where I am involved in computer science education.<br />
<br />
=== Research ===<br />
I am mainly interested in understanding, through a combination of mathematical modeling and experiments and data analysis, how biological systems can robustly self-regulate their behavior. <br />
I studied this in the context of the gene [[regulatory network of the shade avoidance]] mechanism in the model plant Arabidopsis Thaliana and in the context of [[robust gradient formation]] for cell size determination in the fission yeast. <br />
<br />
I also did some genome-wide data analysis related to human genetics, for example [[Genome Wide Association Studies]], and another one showing the [[gender bias in neurodevelopmental disorders | higher resilience of females to mutations in genes involved in neuro-developmental disorders]] such as autism.<br />
<br />
My scientific interests include dynamical systems theory, self-organization, statistical learning theory and large-scale biological data analysis. For additional information, you can consult my [http://people.unil.ch/michahersch/ web page].<br />
<br />
I did my ph.D at the [http://lasa.epfl.ch lasa (EPFL)], where I worked on bio-inspired motor control and artificial cognition for humanoid robots.<br />
<br />
And before this, I worked on automatic speech recognition at the [http://www.icsi.berkeley.edu/ International Computer Science Institute] in Berkeley.<br />
<br />
Beside research and teaching, I also did data analysis and consulting for the private sector. <br />
<br />
=== Academic titles ===<br />
<br />
* 2009: [http://library.epfl.ch/en/theses/?nr=4289 Phd in cognitive robotics], [http://lasa.epfl.ch LASA], EPFL<br />
* 2004: [http://lumiere.ens.fr/~cogmaster/www/ Master in cognitive science], [http://www.upmc.fr Université Paris VI]<br />
* 2003: Master in computer science, [http://www.epfl.ch EPFL]<br />
<br />
=== Publications ===<br />
Look [http://people.unil.ch/michahersch/publications here]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=6333
Publications
2022-04-27T09:03:13Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
__NOTOC__<br />
<br />
== 2022 ==<br />
<pubmed><br />
34897509 35459101<br />
</pubmed><br />
== 2021 ==<br />
<pubmed><br />
34059833 34349265 34520206 34699229 34475573 <br />
</pubmed><br />
<br />
== 2020 ==<br />
<pubmed><br />
33046691 32271874 32372009<br />
</pubmed><br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345 31048460 30778226<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
= 2008 =<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 and older= <br />
<pubmed><br />
16869982 16628014<br />
15720560 16188942 16081737 16470937<br />
15606968 15044247 14737187 12134151 12689096<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=6332
Publications
2022-04-25T07:41:38Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
__NOTOC__<br />
<br />
== 2022 ==<br />
<pubmed><br />
34897509 35459101<br />
</pubmed><br />
== 2021 ==<br />
<pubmed><br />
34059833 34349265 34520206 34699229 34475573 <br />
</pubmed><br />
<br />
== 2020 ==<br />
<pubmed><br />
33046691 32271874 32372009<br />
</pubmed><br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345 31048460 30778226<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
= 2008 =<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= older =<br />
<pubmed><br />
15606968 15044247 14737187 12134151 12689096<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=6331
Publications
2022-04-25T07:39:40Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
__NOTOC__<br />
<br />
== 2022 ==<br />
<pubmed><br />
35459101<br />
</pubmed><br />
== 2021 ==<br />
<pubmed><br />
34059833 34349265 34520206 34699229 34475573 34897509<br />
</pubmed><br />
<br />
== 2020 ==<br />
<pubmed><br />
33046691 32271874 32372009<br />
</pubmed><br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345 31048460 30778226<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
= 2008 =<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= older =<br />
<pubmed><br />
15606968 15044247 14737187 12134151 12689096<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Welcome_to_the_Computational_Biology_Group!&diff=6330
Welcome to the Computational Biology Group!
2022-04-23T19:26:52Z
<p>Micha: /* General info on this wiki */</p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
__NOTOC__<br />
<br />
<!-- <newsbulletins>header=NEWS|limit=3</newsbulletins> --><br />
<!-- A history of all news can be found [[History | here]]. --><br />
<br />
<br />
[[Image:CBG 2017.png|800px]]<br />
<br />
== Who are we? ==<br />
The Computational Biology Group (CBG) is a research group embedded in the [http://unil.ch/dbc Department of Computational Biology] at the [http://unil.ch University of Lausanne]. The group consists of [http://www2.unil.ch/cbg/index.php?title=People PhD students and postdocs] and is led by [[user:Sven | Prof. Sven Bergmann]].<br />
<br />
== What are our interests? ==<br />
We develop and apply methods for the integrative analysis of large-scale biological and clinical data. Our goals are to improve fundamental understanding of how genetic variability affects phenotypes, to learn about underlying molecular mechanisms, and to make use of our insights to improve the diagnosis, prevention and treatment of disease whenever possible [http://www2.unil.ch/cbg/index.php?title=Science#Integrative_analysis_of_large-scale_biological_and_clinical_data Learn more]. We are also interested in relatively small biological systems that can be modeled quantitatively. Here our goal is to better understand the properties of these systems that contribute their functionality such as robustness and evolvability under changing environmental conditions [http://www2.unil.ch/cbg/index.php?title=Science#Study_of_small_genetic_networks Learn more].<br />
<br />
== How do we work? ==<br />
Most of our work is computational, which means we use computer algorithms to process and analyse data. Our analyses often have a statistical component to evaluate the significance of results. Whenever possible we describe our data using mathematical models. Sometimes these models can be solved analytically, but often we rely on numerical solutions and simulations. Some of our methods have a heuristic component, but we try to evaluate them rigorously and make them as practical as possible. We strongly believe in sharing our analysis tools and Open Science in general. <br />
<br />
Our group seeks an interdisciplinary approach, bridging the traditional gaps between physics, mathematics and biology. Our lab collaborates with experimental and medical research groups.<br />
<br />
== General info on this wiki ==<br />
This wiki is the main instrument to centralize and archive information on and generated by the CBG. Ask [[user:Michael | Michael]] if you have any questions or need an account.<br />
<br />
<br />
<!-- <newsbulletins>header=NEWS|limit=1</newsbulletins> --></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=6258
Publications
2021-12-13T09:12:01Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2021 ==<br />
<pubmed><br />
34059833 34349265 34520206 34699229 34475573<br />
</pubmed><br />
<br />
== 2020 ==<br />
<pubmed><br />
33046691 32271874 32372009<br />
</pubmed><br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345 31048460 30778226<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
= 2008 =<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=6257
Publications
2021-12-13T09:06:26Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2021 ==<br />
<pubmed><br />
34059833 34349265 34520206 34699229 34475573<br />
</pubmed><br />
<br />
== 2020 ==<br />
<pubmed><br />
33046691 32271874 32372009 32372009<br />
</pubmed><br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345 31048460 30778226<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
= 2008 =<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Welcome_to_the_Computational_Biology_Group!&diff=5873
Welcome to the Computational Biology Group!
2020-10-12T11:36:24Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
__NOTOC__<br />
<br />
<!-- <newsbulletins>header=NEWS|limit=3</newsbulletins> --><br />
<!-- A history of all news can be found [[History | here]]. --><br />
<br />
<br />
[[Image:CBG 2017.png|800px]]<br />
<br />
== Who are we? ==<br />
The Computational Biology Group (CBG) is a research group embedded in the [http://unil.ch/dbc Department of Computational Biology] at the [http://unil.ch University of Lausanne]. The group consists of [http://www2.unil.ch/cbg/index.php?title=People PhD students and postdocs] and is led by [[user:Sven | Prof. Sven Bergmann]].<br />
<br />
== What are our interests? ==<br />
We develop and apply methods for the integrative analysis of large-scale biological and clinical data. Our goals are to improve fundamental understanding of how genetic variability affects phenotypes, to learn about underlying molecular mechanisms, and to make use of our insights to improve the diagnosis, prevention and treatment of disease whenever possible [http://www2.unil.ch/cbg/index.php?title=Science#Integrative_analysis_of_large-scale_biological_and_clinical_data Learn more]. We are also interested in relatively small biological systems that can be modeled quantitatively. Here our goal is to better understand the properties of these systems that contribute their functionality such as robustness and evolvability under changing environmental conditions [http://www2.unil.ch/cbg/index.php?title=Science#Study_of_small_genetic_networks Learn more].<br />
<br />
== How do we work? ==<br />
Most of our work is computational, which means we use computer algorithms to process and analyse data. Our analyses often have a statistical component to evaluate the significance of results. Whenever possible we describe our data using mathematical models. Sometimes these models can be solved analytically, but often we rely on numerical solutions and simulations. Some of our methods have a heuristic component, but we try to evaluate them rigorously and make them as practical as possible. We strongly believe in sharing our analysis tools and Open Science in general. <br />
<br />
Our group seeks an interdisciplinary approach, bridging the traditional gaps between physics, mathematics and biology. Our lab collaborates with experimental and medical research groups.<br />
<br />
== General info on this wiki ==<br />
This wiki is the main instrument to centralize and archive information on and generated by the CBG. Ask [[user:Micha | Micha]] if you have any questions or need an account.<br />
<br />
<br />
<newsbulletins>header=NEWS|limit=1</newsbulletins></div>
Micha
http://www2.unil.ch/cbg/index.php?title=News&diff=5872
News
2020-10-12T11:36:12Z
<p>Micha: </p>
<hr />
<div>[[Category:Bulletins]]<br />
<br />
<br />
<newstitle>Patterning in the inner ear</newstitle> <br />
<teaser><br />
In mammals, the organ of Corti in the inner ear contains cells that can convert mechanical vibrations induced by sound into a neural signal. Those so-called hair cells are distributed along the cochlea together with another type of cells (supporting cells) in a neatly arranged checkerboard pattern. How this pattern emerges during development from an homogeneous layer of epithelial cells is the object<br />
of our latest publication. Together with the group of David Sprinzak at the University of Tel Aviv, we showed that mechanical forces acting<br />
on the tissue, together with delta-notch signaling, drive this patterning process. Our study, which combines experiments and modeling <br />
has been published in <a href = "https://www.nature.com/articles/s41467-020-18894-8"> Nature Communications </a>.<br />
<date> 12 October 2020 </date> <br />
</teaser><br />
<br />
<br />
<br />
<newstitle>Disease Module Identification DREAM Challenge</newstitle> <br />
<teaser><br />
Many bioinformatics methods have been proposed for reducing the complexity of large gene or protein networks into relevant subnetworks or modules. Yet, how such methods compare to each other in terms of their ability to identify disease-relevant modules in different types of networks remains poorly understood. We launched the “Disease Module Identification DREAM Challenge”, an open competition to comprehensively assess module identification methods across diverse protein-protein interaction, signaling, gene co-expression, homology, and cancer-gene networks. Assessing 75 contributed module identification methods revealed novel top-performing algorithms, and established resource of modules correspond to core disease-relevant pathways for studying human disease biology (more info is in <a href="https://synapse.org/modulechallenge"> the challenge webpage </a> and <a href="https://www.biorxiv.org/content/10.1101/265553v2"> the paper</a>).<br />
<date>28 Jan 2019</date><br />
</teaser><br />
<br />
<newstitle>PhenoMeNal: processing and analysis of metabolomics data in the cloud. </newstitle> <br />
<teaser><br />
As a member of the PhenoMeNal (Phenome and Metabolome aNalysis) consortium we contributed to set up a system of Infrastructure-as-a-Service (IaaS) that brings workflow-oriented, interoperable metabolomics data analysis platforms into the cloud. PhenoMeNal seamlessly integrates a wide array of existing open-source tools that are tested and packaged as Docker containers through the project's continuous integration process and deployed based on a kubernetes orchestration framework. It also provides a number of standardised, automated, and published analysis workflows. The paper is published in <a href =" https://doi.org/10.1093/gigascience/giy149"> GigaScience </a>.<br />
<date> 7 Dec 2018</date><br />
</teaser><br />
<br />
<br />
<br />
See the [[Main Page]] for the latest news.</div>
Micha
http://www2.unil.ch/cbg/index.php?title=News&diff=5871
News
2020-10-12T11:35:09Z
<p>Micha: </p>
<hr />
<div>[[Category:Bulletins]]<br />
<br />
<br />
<newstitle>Patterning in the inner ear</newstitle> <br />
<teaser><br />
In mammals, the organ of Corti in the inner ear contains cells that can convert mechanical vibrations induced by sound into a neural signal. Those so-called hair cells are distributed along the cochlea together with another type of cells (supporting cells) in a neatly arranged checkerboard pattern. How this pattern emerges during development from an homogeneous layer of epithelial cells is the object<br />
of our latest publication. Together with the group of David Sprinzak at the University of Tel Aviv, we showed that mechanical forces acting<br />
on the tissue, together with delta-notch signaling, drive this patterning process. Our study, which combines experiments and modeling <br />
has been published in <a href = "https://www.nature.com/articles/s41467-020-18894-8"> Nature Communications </a.<br />
<date> 12 October 2020 </date> <br />
</teaser><br />
<br />
<br />
<br />
<newstitle>Disease Module Identification DREAM Challenge</newstitle> <br />
<teaser><br />
Many bioinformatics methods have been proposed for reducing the complexity of large gene or protein networks into relevant subnetworks or modules. Yet, how such methods compare to each other in terms of their ability to identify disease-relevant modules in different types of networks remains poorly understood. We launched the “Disease Module Identification DREAM Challenge”, an open competition to comprehensively assess module identification methods across diverse protein-protein interaction, signaling, gene co-expression, homology, and cancer-gene networks. Assessing 75 contributed module identification methods revealed novel top-performing algorithms, and established resource of modules correspond to core disease-relevant pathways for studying human disease biology (more info is in <a href="https://synapse.org/modulechallenge"> the challenge webpage </a> and <a href="https://www.biorxiv.org/content/10.1101/265553v2"> the paper</a>).<br />
<date>28 Jan 2019</date><br />
</teaser><br />
<br />
<newstitle>PhenoMeNal: processing and analysis of metabolomics data in the cloud. </newstitle> <br />
<teaser><br />
As a member of the PhenoMeNal (Phenome and Metabolome aNalysis) consortium we contributed to set up a system of Infrastructure-as-a-Service (IaaS) that brings workflow-oriented, interoperable metabolomics data analysis platforms into the cloud. PhenoMeNal seamlessly integrates a wide array of existing open-source tools that are tested and packaged as Docker containers through the project's continuous integration process and deployed based on a kubernetes orchestration framework. It also provides a number of standardised, automated, and published analysis workflows. The paper is published in <a href =" https://doi.org/10.1093/gigascience/giy149"> GigaScience </a>.<br />
<date> 7 Dec 2018</date><br />
</teaser><br />
<br />
<br />
<br />
See the [[Main Page]] for the latest news.</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=5866
Publications
2020-10-05T07:30:40Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2020 ==<br />
<pubmed><br />
32271874<br />
</pubmed><br />
<br />
<br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345 31048460 30778226<br />
<br />
<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
<br />
= 2008 =<br />
<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2020&diff=5847
UNIL BSc course: Solving Biological Problems that require Math 2020
2020-07-02T12:39:41Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2020]]<br />
* Projects<br />
** [[Media: WikiAutoencoder.pdf | Autoencoding diseases]]<br />
** [[Stress management in Yeast]]<br />
** [[Media:Weighted_Correlation_Network_Analysis_(WGCNA).pdf | Gene expression modules WGCNA]]<br />
** [[Media:Codon_usage_project.pdf | Codon pair usage]]<br />
<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Anneke|Anneke]]<br />
<br />
<br />
* [[Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2019"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2020&diff=5841
UNIL BSc course: Solving Biological Problems that require Math 2020
2020-06-16T08:11:36Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2020]]<br />
* Projects<br />
** [[Media: WikiAutoencoder.pdf | Autoencoding diseases]]<br />
** [[Stress management in Yeast]]<br />
** [[Media:Weighted_Correlation_Network_Analysis_(WGCNA).pdf | Gene expression modules WGCNA]]<br />
** [[Media:Codon_usage_project.pdf | Codon pair usage]]<br />
<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Anneke|Anneke]]<br />
<br />
*Wiki students<br />
<br />
* [[Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2019"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2020&diff=5840
UNIL BSc course: Solving Biological Problems that require Math 2020
2020-06-16T08:11:23Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2020]]<br />
* Projects<br />
** [[Media: WikiAutoencoder.pdf | Autoencoding diseases]<br />
** [[Stress management in Yeast]]<br />
** [[Media:Weighted_Correlation_Network_Analysis_(WGCNA).pdf | Gene expression modules WGCNA]]<br />
** [[Media:Codon_usage_project.pdf | Codon pair usage]]<br />
<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Anneke|Anneke]]<br />
<br />
*Wiki students<br />
<br />
* [[Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2019"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=File:WikiAutoencoder.pdf&diff=5839
File:WikiAutoencoder.pdf
2020-06-16T08:10:26Z
<p>Micha: </p>
<hr />
<div>Report Solving biological problems that require math , 2020</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2020&diff=5838
UNIL BSc course: Solving Biological Problems that require Math 2020
2020-06-08T11:42:19Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2020]]<br />
* Projects<br />
** Autoencoding diseases<br />
** [[Stress management in Yeast]]<br />
** [[Media:Weighted_Correlation_Network_Analysis_(WGCNA).pdf | Gene expression modules WGCNA]]<br />
** [[Media:Codon_usage_project.pdf | Codon pair usage]]<br />
<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Anneke|Anneke]]<br />
<br />
*Wiki students<br />
<br />
* [[Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2019"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=File:Weighted_Correlation_Network_Analysis_(WGCNA).pdf&diff=5837
File:Weighted Correlation Network Analysis (WGCNA).pdf
2020-06-08T11:40:36Z
<p>Micha: </p>
<hr />
<div></div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2020&diff=5836
UNIL BSc course: Solving Biological Problems that require Math 2020
2020-06-08T11:38:16Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2020]]<br />
* Projects<br />
** Autoencoding diseases<br />
** [[Stress management in Yeast]]<br />
** Gene expression modules with ISA <br />
** Gene expression modules WGCNA<br />
** [[Media:Codon_usage_project.pdf | Codon pair usage]]<br />
<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Reyhan|Reyhan]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Anneke|Anneke]]<br />
<br />
*Wiki students<br />
<br />
* [[Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2019"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5835
Stress management in Yeast
2020-06-08T11:36:11Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]<br />
<br />
''' Results''': See presentaion [[Media:Gestion_du_stress_chez_la_levure.pptx | here.]]<br />
<br />
Back to [[UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2020]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5834
Stress management in Yeast
2020-06-08T11:35:13Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]<br />
<br />
''' Results''': See presentaion [[Media:Gestion_du_stress_chez_la_levure.pptx | here.]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5833
Stress management in Yeast
2020-06-08T11:35:04Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]<br />
<br />
''' Results''': See presentaion here [[Media:Gestion_du_stress_chez_la_levure.pptx | here.]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5832
Stress management in Yeast
2020-06-08T11:34:34Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]<br />
<br />
''' Results''': See presentaion here [[Media:Gestion_du_stress_chez_la_levure.pptx]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5831
Stress management in Yeast
2020-06-08T11:34:18Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]<br />
<br />
''' Results''': See presentaion here [[File:Gestion_du_stress_chez_la_levure.pptx]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5830
Stress management in Yeast
2020-06-08T11:33:56Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]<br />
<br />
''' Results''': See presentaion here [[Media:Gestion_du_stress_chez_la_levure.pptx:]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5829
Stress management in Yeast
2020-06-08T11:33:26Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]<br />
<br />
''' Results''': See presentaion here [[File:Gestion_du_stress_chez_la_levure.pptx:]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5828
Stress management in Yeast
2020-06-08T11:32:20Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]<br />
<br />
''' Results''': See presentaion here [[Media:]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Stress_management_in_Yeast&diff=5827
Stress management in Yeast
2020-06-08T11:31:25Z
<p>Micha: </p>
<hr />
<div>'''Background''': The stress response is a very important function in yeast that plays a major role in its survival. It is however unclear to what extent this response is stereotypical or variable and whether it can be graded. <br />
<br />
'''Goal''': The goal of this project to analyze single-cell transcriptomics data of yeast in stress and unstress conditions and define and characterize a stress measure from that data<br />
<br />
'''Computational Tools''': Programming will be done in Python and/or R<br />
<br />
'''Mathematical tools''': Statistics and dimensionality reduction methods will be used<br />
<br />
'''Biological or Medical aspects''': Transcriptional response to stress in yeast<br />
<br />
'''Supervisor''': [[User:Micha | Micha]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2020&diff=5826
UNIL BSc course: Solving Biological Problems that require Math 2020
2020-06-08T11:24:11Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2020]]<br />
* Projects<br />
** Autoencoding diseases<br />
** [[Stress management in Yeast]]<br />
** Gene expression modules with ISA <br />
** Gene expression modules WGCNA<br />
** Codon pair usage<br />
<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Reyhan|Reyhan]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Anneke|Anneke]]<br />
<br />
*Wiki students<br />
<br />
* [[Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2019"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Bioinformatics_for_Genomics_2020&diff=5786
UNIL BSc course: Bioinformatics for Genomics 2020
2020-03-19T09:53:41Z
<p>Micha: </p>
<hr />
<div>* Course aims:<br />
** Get to know some of the the bioinformatics methods necessary for genomic analysis<br />
** Use these methods on simple real cases<br />
**Develop an understanding of potential pitfalls and the impact of bioinformatics choices in genomic results<br />
<br />
* Prerequisites:<br />
** Notions of genomics (gene, genome, transcriptome)<br />
** Basic statistics (what is a test, a p-value)<br />
** Basic literacy in R and/or Python.<br />
<br />
* Teacher: [[Sven Bergmann]] <br />
<br />
* Assistants<br />
** [[User:Reyhan|Reyhan]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Bita|Bita]]<br />
** [[User:Anneke|Anneke]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Micha| Micha]]<br />
<br />
* Schedule<br />
** 23 March 2020, 08:00-12:00: Session 1: "RNA-seq & DE"<br />
** 24 March 2020, 08:00-12:00: Session 2: "Clustering"<br />
** 30 March 2020, 08:00-12:00: Session 3: "Biclustering"<br />
** 31 March 2020, 08:00-12:00: Session 4: "More data"<br />
**1 April 2020, 08:00-12:00: Session 5: "Networks"<br />
<br />
Each slot of 4h will start with a lecture of ~2h, followed by an exercise session. <br />
This semester all lectures and exercises will be given online. Live sessions at the above times will be given via Zoom.<br />
<br />
* Lecture presentations<br />
** "RNA-seq & DE": [[Media:Lecture1.pptx | slides]]<br />
** "Clustering": [[Media:Lecture2.pptx | slides]]<br />
** "Biclustering": [[Media:Lecture3.pptx| slides]]<br />
** "More data": [[Media:Lecture4.pptx| slides]]<br />
** "Networks": [[Media:Lecture5.pptx | slides]]<br />
<br />
* Exercise material<br />
** "RNA-seq & DE": [[File:exercise1.zip]]<br />
** "Clustering": [[File:exercise2.zip]]<br />
** "Biclustering": [[exercise3.zip]]<br />
** "More data": [[File:exercise4.zip]]<br />
** "Networks": [[exercise5.zip]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=5760
Publications
2020-01-15T16:30:57Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345 31048460 30778226<br />
<br />
<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
<br />
= 2008 =<br />
<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=5759
Publications
2020-01-15T16:26:17Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345 31048460<br />
<br />
<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807 30778226<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
<br />
= 2008 =<br />
<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=5758
Publications
2020-01-15T16:21:32Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2019 ==<br />
<pubmed> <br />
30643258 30535405 31318216 31578528 31471613 31263163 31152163 30851093 30788345<br />
<br />
<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807 30778226<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
<br />
= 2008 =<br />
<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=5750
Publications
2019-11-20T10:27:08Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2019 ==<br />
<pubmed><br />
30643258 30535405 31318216<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
<br />
= 2008 =<br />
<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=5749
Publications
2019-11-20T10:24:55Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2019 ==<br />
<pubmed><br />
30643258 30535405<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
<br />
= 2008 =<br />
<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=Publications&diff=5748
Publications
2019-11-20T10:04:33Z
<p>Micha: </p>
<hr />
<div>[[Category:Homepage]]<br />
<br />
== 2019 ==<br />
<pubmed><br />
30643258 30535405 31318216<br />
</pubmed><br />
<br />
== 2018 ==<br />
<pubmed><br />
30388399 30275313 30038396 29912962 29491460 29093028 29273807<br />
</pubmed><br />
<br />
== 2017 ==<br />
<pubmed><br />
28118358 28292428 28249171 28272467 28436984 28512139 28821713 29194434 28832619 28642257 28448500 28443625 28436984 28360221 28146470<br />
</pubmed><br />
<br />
== 2016 ==<br />
<pubmed><br />
26631737 26950747 26808494 26751788 27280446 27604219 27798627 27680694 27412012 27225129 27089181 26959991 27915449 27799538 <br />
</pubmed><br />
<br />
== 2015 ==<br />
<pubmed><br />
26414677 25903154 25899854 25493955 26101320 26131930 26150232 26352407 26426971<br />
</pubmed><br />
<br />
= 2014 =<br />
<pubmed><br />
25261457 25078964 24733935 24581740 24586186 25231870 24954895 24578125 24357391 <br />
</pubmed><br />
<br />
= 2013 =<br />
<br />
<pubmed><br />
24316795 24068962 24076239 24029420 23966204 23951114 23307926 23637639 23459469 23558354 23307926<br />
</pubmed><br />
<br />
= 2012 =<br />
<br />
<pubmed><br />
23152332 23222517 22859963 22781128 22702538 22492992 22479191 22458817 22415877 22374392 22337502 22094361 23022100 21502950 23285067 23062006 23122585 22238593<br />
</pubmed><br />
<br />
= 2011 =<br />
<br />
<pubmed><br />
22205949 22184326 22028824 22180014 22139419 22132133 22095909 22069379 22039350 21909115 21909110 22028671 22012392 21814489 21980298 21907016 21881559 21511889 21465548 21355061 21304579 21665994 20543033 22169038 21511889<br />
</pubmed><br />
Hersch M, Billard A, Bergmann S. ''Iterative Estimation of Rigid Body Transformations - Application to robust object tracking and Iterative Closest Point.'' Journal of Mathematical Imaging and Vision. 2011 [[Media:hersch2012iterative.pdf| pdf]] [[ICP software]]<br />
<br />
= 2010 =<br />
<br />
<pubmed><br />
21102462 20940178 20935629 20935630 <br />
20881960 20711174 20671149 20661308 <br />
20212523 20543033 20371495 20060832 <br />
20375113 20081857 20081858 20169148<br />
20520806 20430392<br />
</pubmed><br />
<br />
= 2009 =<br />
<br />
<pubmed><br />
19672458 19542082 19503597 19139842 <br />
19430483 19079261 19060907<br />
</pubmed><br />
<br />
<br />
= 2008 =<br />
<br />
<pubmed><br />
18262040 18391952 18454148 18518969<br />
18758442 18940312 18464786 18191212<br />
</pubmed><br />
<br />
= 2007 = <br />
<br />
<pubmed><br />
17700364 17298180<br />
</pubmed><br />
<br />
= 2006 = <br />
<br />
<pubmed><br />
16869982 16628014<br />
</pubmed><br />
<br />
= 2005 =<br />
<br />
<pubmed><br />
15720560 16188942 16081737 16470937<br />
</pubmed><br />
<br />
= 2004 =<br />
<br />
<pubmed><br />
15606968 15044247 14737187<br />
</pubmed><br />
<br />
= 2003 =<br />
<br />
<pubmed><br />
12689096<br />
</pubmed><br />
<br />
= 2002 =<br />
<br />
<pubmed><br />
12134151<br />
</pubmed></div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_PhD_course:_Biology_for_non-biologists_2019&diff=5747
UNIL PhD course: Biology for non-biologists 2019
2019-11-20T09:57:15Z
<p>Micha: </p>
<hr />
<div>* Coordinator: [[Sven Bergmann]]<br />
* Course idea and teaching goals of Biology for non-biologists:<br />
**Teach basic concepts of biology to students with no or little background in biology<br />
**The goal is excite the students by giving them some glimpses of biological fundamentals<br />
** Teaching is very informal giving enough time for discussion and questions. <br />
* [[Schedule for Biology for non-biologists 2019]]<br />
* Modules<br />
** Module 1: Basic building blocks of life: From molecules to cells | [https://docs.google.com/presentation/d/1OFJOvZAOTImW4htv8FYAUf6DruHZztzpRupL05cEX74/edit?usp=sharing Module1slides]<br />
** Module 2: Central dogma: Understanding the mechanisms and machinery for DNA replication, transcription and translation |[[Media:Module2slides.pdf | slides]]<br />
** Module 3: Evolution: Reproduction strategies, selection, population genetics<br />
** Module 4: Cancer: When evolution works against you| [[Media: Ciriello_lecture_2019.pdf | slides]]<br />
** Module 3: Development: How cells organise themselves in space and time<br />
* Reading Material<br />
**Bruce Alberts at al. « Molecular Biology of the Cell », ISBN-10: 0-8153-3218-1 | [https://www.slideshare.net/julururadhika/molecularbiologyofthecellalberts6thed-65418285 slides]<br />
**Richard Dawkins, « The Blind Watchmaker », ISBN: 0-393-31570-3<br />
* Teachers<br />
** [[User:Sven|Sven Bergmann]]: Module 1<br />
** [[User:MariaCristinaGambetta|Maria Cristina Gambetta]]: Module 2<br />
** [[User:Micha|Micha Hersch]]: Module 3<br />
** [[User:Giovanni|Giovanni Cirello]]: Module 4<br />
** [[User:Aitana|Aitana Lebrand]]: Module 5</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_PhD_course:_Biology_for_non-biologists_2019&diff=5746
UNIL PhD course: Biology for non-biologists 2019
2019-11-20T09:56:39Z
<p>Micha: </p>
<hr />
<div>* Coordinator: [[Sven Bergmann]]<br />
* Course idea and teaching goals of Biology for non-biologists:<br />
**Teach basic concepts of biology to students with no or little background in biology<br />
**The goal is excite the students by giving them some glimpses of biological fundamentals<br />
** Teaching is very informal giving enough time for discussion and questions. <br />
* [[Schedule for Biology for non-biologists 2019]]<br />
* Modules<br />
** Module 1: Basic building blocks of life: From molecules to cells | [https://docs.google.com/presentation/d/1OFJOvZAOTImW4htv8FYAUf6DruHZztzpRupL05cEX74/edit?usp=sharing Module1slides]<br />
** Module 2: Central dogma: Understanding the mechanisms and machinery for DNA replication, transcription and translation [[Media:Module2slides.pdf | slides]]<br />
** Module 3: Evolution: Reproduction strategies, selection, population genetics<br />
** Module 4: Cancer: When evolution works against you. [[Media: Ciriello_lecture_2019.pdf | slides]]<br />
** Module 3: Development: How cells organise themselves in space and time<br />
* Reading Material<br />
**Bruce Alberts at al. « Molecular Biology of the Cell », ISBN-10: 0-8153-3218-1 | [https://www.slideshare.net/julururadhika/molecularbiologyofthecellalberts6thed-65418285 slides]<br />
**Richard Dawkins, « The Blind Watchmaker », ISBN: 0-393-31570-3<br />
* Teachers<br />
** [[User:Sven|Sven Bergmann]]: Module 1<br />
** [[User:MariaCristinaGambetta|Maria Cristina Gambetta]]: Module 2<br />
** [[User:Micha|Micha Hersch]]: Module 3<br />
** [[User:Giovanni|Giovanni Cirello]]: Module 4<br />
** [[User:Aitana|Aitana Lebrand]]: Module 5</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_PhD_course:_Biology_for_non-biologists_2019&diff=5745
UNIL PhD course: Biology for non-biologists 2019
2019-11-20T09:55:00Z
<p>Micha: </p>
<hr />
<div>* Coordinator: [[Sven Bergmann]]<br />
* Course idea and teaching goals of Biology for non-biologists:<br />
**Teach basic concepts of biology to students with no or little background in biology<br />
**The goal is excite the students by giving them some glimpses of biological fundamentals<br />
** Teaching is very informal giving enough time for discussion and questions. <br />
* [[Schedule for Biology for non-biologists 2019]]<br />
* Modules<br />
** Module 1: Basic building blocks of life: From molecules to cells | [https://docs.google.com/presentation/d/1OFJOvZAOTImW4htv8FYAUf6DruHZztzpRupL05cEX74/edit?usp=sharing Module1slides]<br />
** Module 2: Central dogma: Understanding the mechanisms and machinery for DNA replication, transcription and translation | [[File:Module2slides.pdf]]<br />
** Module 3: Evolution: Reproduction strategies, selection, population genetics<br />
** Module 4: Cancer: When evolution works against you [[Media: Ciriello_lecture_2019.pdf | slides]]<br />
** Module 3: Development: How cells organise themselves in space and time<br />
* Reading Material<br />
**Bruce Alberts at al. « Molecular Biology of the Cell », ISBN-10: 0-8153-3218-1 | [https://www.slideshare.net/julururadhika/molecularbiologyofthecellalberts6thed-65418285 slides]<br />
**Richard Dawkins, « The Blind Watchmaker », ISBN: 0-393-31570-3<br />
* Teachers<br />
** [[User:Sven|Sven Bergmann]]: Module 1<br />
** [[User:MariaCristinaGambetta|Maria Cristina Gambetta]]: Module 2<br />
** [[User:Micha|Micha Hersch]]: Module 3<br />
** [[User:Giovanni|Giovanni Cirello]]: Module 4<br />
** [[User:Aitana|Aitana Lebrand]]: Module 5</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_PhD_course:_Biology_for_non-biologists_2019&diff=5744
UNIL PhD course: Biology for non-biologists 2019
2019-11-20T09:53:58Z
<p>Micha: </p>
<hr />
<div>* Coordinator: [[Sven Bergmann]]<br />
* Course idea and teaching goals of Biology for non-biologists:<br />
**Teach basic concepts of biology to students with no or little background in biology<br />
**The goal is excite the students by giving them some glimpses of biological fundamentals<br />
** Teaching is very informal giving enough time for discussion and questions. <br />
* [[Schedule for Biology for non-biologists 2019]]<br />
* Modules<br />
** Module 1: Basic building blocks of life: From molecules to cells | [https://docs.google.com/presentation/d/1OFJOvZAOTImW4htv8FYAUf6DruHZztzpRupL05cEX74/edit?usp=sharing Module1slides]<br />
** Module 2: Central dogma: Understanding the mechanisms and machinery for DNA replication, transcription and translation | [[File:Module2slides.pdf]]<br />
** Module 3: Evolution: Reproduction strategies, selection, population genetics<br />
** Module 4: Cancer: When evolution works against you [[File: Ciriello_lecture_2019.pdf | slides]]<br />
** Module 3: Development: How cells organise themselves in space and time<br />
* Reading Material<br />
**Bruce Alberts at al. « Molecular Biology of the Cell », ISBN-10: 0-8153-3218-1 | [https://www.slideshare.net/julururadhika/molecularbiologyofthecellalberts6thed-65418285 slides]<br />
**Richard Dawkins, « The Blind Watchmaker », ISBN: 0-393-31570-3<br />
* Teachers<br />
** [[User:Sven|Sven Bergmann]]: Module 1<br />
** [[User:MariaCristinaGambetta|Maria Cristina Gambetta]]: Module 2<br />
** [[User:Micha|Micha Hersch]]: Module 3<br />
** [[User:Giovanni|Giovanni Cirello]]: Module 4<br />
** [[User:Aitana|Aitana Lebrand]]: Module 5</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_PhD_course:_Biology_for_non-biologists_2019&diff=5743
UNIL PhD course: Biology for non-biologists 2019
2019-11-20T09:53:45Z
<p>Micha: </p>
<hr />
<div>* Coordinator: [[Sven Bergmann]]<br />
* Course idea and teaching goals of Biology for non-biologists:<br />
**Teach basic concepts of biology to students with no or little background in biology<br />
**The goal is excite the students by giving them some glimpses of biological fundamentals<br />
** Teaching is very informal giving enough time for discussion and questions. <br />
* [[Schedule for Biology for non-biologists 2019]]<br />
* Modules<br />
** Module 1: Basic building blocks of life: From molecules to cells | [https://docs.google.com/presentation/d/1OFJOvZAOTImW4htv8FYAUf6DruHZztzpRupL05cEX74/edit?usp=sharing Module1slides]<br />
** Module 2: Central dogma: Understanding the mechanisms and machinery for DNA replication, transcription and translation | [[File:Module2slides.pdf]]<br />
** Module 3: Evolution: Reproduction strategies, selection, population genetics<br />
** Module 4: Cancer: When evolution works against you [[File: Ciriello_lecture_2019.pdf slides]]<br />
** Module 3: Development: How cells organise themselves in space and time<br />
* Reading Material<br />
**Bruce Alberts at al. « Molecular Biology of the Cell », ISBN-10: 0-8153-3218-1 | [https://www.slideshare.net/julururadhika/molecularbiologyofthecellalberts6thed-65418285 slides]<br />
**Richard Dawkins, « The Blind Watchmaker », ISBN: 0-393-31570-3<br />
* Teachers<br />
** [[User:Sven|Sven Bergmann]]: Module 1<br />
** [[User:MariaCristinaGambetta|Maria Cristina Gambetta]]: Module 2<br />
** [[User:Micha|Micha Hersch]]: Module 3<br />
** [[User:Giovanni|Giovanni Cirello]]: Module 4<br />
** [[User:Aitana|Aitana Lebrand]]: Module 5</div>
Micha
http://www2.unil.ch/cbg/index.php?title=File:Ciriello_lecture_2019.pdf&diff=5742
File:Ciriello lecture 2019.pdf
2019-11-20T09:52:37Z
<p>Micha: </p>
<hr />
<div>Biology for non-biologists 2019<br />
Cancer lecture</div>
Micha
http://www2.unil.ch/cbg/index.php?title=File:WGCNAGeneExpr_SBPRM2019.pdf&diff=5694
File:WGCNAGeneExpr SBPRM2019.pdf
2019-06-11T13:48:31Z
<p>Micha: </p>
<hr />
<div>Report bachelor course project suprvised by Mattia</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2019&diff=5693
UNIL BSc course: Solving Biological Problems that require Math 2019
2019-06-11T13:46:58Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2019]]<br />
* Projects<br />
** [[Analyzing NMR spectrum data with deep learning]]<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Reyhan|Reyhan]]<br />
*Wiki students<br />
** [[ Bacterial cross-resistance]]<br />
** [[Media:Deep-Learning SBPRM2019.pdf| Deep learning report]]<br />
** [[Media: ISAGeneExpr SBPRM2019.pdf | Modular analysis of gene expression data using ISA]]<br />
** [[Media: WGCNAGeneExpr SBPRM2019.pdf | WGCNA module analysis of gene expression data]]<br />
<br />
* [[ Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2018"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2019&diff=5692
UNIL BSc course: Solving Biological Problems that require Math 2019
2019-06-05T16:33:10Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2019]]<br />
* Projects<br />
** [[Analyzing NMR spectrum data with deep learning]]<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Reyhan|Reyhan]]<br />
*Wiki students<br />
** [[ Bacterial cross-resistance]]<br />
** [[Media:Deep-Learning SBPRM2019.pdf| Deep learning report]]<br />
** [[Media: ISAGeneExpr SBPRM2019.pdf | Modular analysis of gene expression data using ISA]]<br />
* [[ Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2018"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=File:ISAGeneExpr_SBPRM2019.pdf&diff=5691
File:ISAGeneExpr SBPRM2019.pdf
2019-06-05T16:31:47Z
<p>Micha: </p>
<hr />
<div>Report for project (2019): modular analysis of gene expression data using ISA</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2019&diff=5690
UNIL BSc course: Solving Biological Problems that require Math 2019
2019-06-05T16:30:31Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2019]]<br />
* Projects<br />
** [[Analyzing NMR spectrum data with deep learning]]<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Reyhan|Reyhan]]<br />
*Wiki students<br />
** [[ Bacterial cross-resistance]]<br />
** [[Media:Deep-Learning SBPRM2019.pdf| Deep learning report]]<br />
** [[Media: ISAGeneExpr_SBPRM2019.pdf | Modular analysis of gene expression data using ISA]]<br />
* [[ Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2018"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2019&diff=5689
UNIL BSc course: Solving Biological Problems that require Math 2019
2019-06-04T10:13:15Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2019]]<br />
* Projects<br />
** [[Analyzing NMR spectrum data with deep learning]]<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Reyhan|Reyhan]]<br />
*Wiki students<br />
** [[ Bacterial cross-resistance]]<br />
** [[Media:Deep-Learning SBPRM2019.pdf| Deep learning report]]<br />
* [[ Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2018"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha
http://www2.unil.ch/cbg/index.php?title=UNIL_BSc_course:_Solving_Biological_Problems_that_require_Math_2019&diff=5688
UNIL BSc course: Solving Biological Problems that require Math 2019
2019-06-04T10:12:40Z
<p>Micha: </p>
<hr />
<div>* Coordinators: [[Sven Bergmann]] <br />
* [[Concept]]<br />
* [[Useful tools]]<br />
* [[Dates and Deadlines 2019]]<br />
* Projects<br />
** [[Analyzing NMR spectrum data with deep learning]]<br />
* Supervisors<br />
** [[User:Micha| Micha]]<br />
** [[User:Daniel|Daniel]]<br />
** [[User:Mattia|Mattia]]<br />
** [[User:Reyhan|Reyhan]]<br />
*Wiki students<br />
** [[ Bacterial cross-resistance]]<br />
** [[Media:Deep_LearningSBPRM2019.pdf| Deep learning report]]<br />
* [[ Grading]]<br />
* see also [[UNIL BSc course: "Solving Biological Problems that require Math 2018"]]<br />
* [[How to upload files and edit your project page]]</div>
Micha