ISA

Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

• Microsoft Windows (32 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Microsoft Windows (64 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Mac OSX (Leopard)
  Download and install this file.
• Linux and Unix systems, R source package
  Download this file, save it in a temporary directory, and start R. Install the downloaded package using the install.packages() function: give the full path of the saved file and use the 'repos=NULL' argument of install.packages().

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Abeykoon SW, White RJ
Single Voltammetric Sweep Calibration-Free Interrogation of Electrochemical Aptamer-Based Sensors Employing Continuous Square Wave Voltammetry.
Anal Chem: 2024 Apr 25;
[PubMed:38662230] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wani BA, Magray JA, Ganie AH, Rashid S, Roof-Ul-Qadir, Javid H, Nawchoo IA
Seed biology imperative for conservation and restoration of Swertia thomsonii C.B. Clarke-an endemic medicinal plant of Himalaya.
Environ Monit Assess: 2024 Apr 25, 196(5);472
[PubMed:38662176] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Duc HD, Oanh NT, Dieu Thuy NT, Kim Xuan NT
Degradation of pretilachlor and fenclorim and effects of these compounds on bacterial communities under anaerobic condition.
Biodegradation: 2024 Apr 25;
[PubMed:38662140] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Deantas-Jahn C, Mendoza SN, Licona-Cassani C, Orellana C, Saa PA
Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation.
Appl Microbiol Biotechnol: 2024 Apr 25, 108(1);310
[PubMed:38662130] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Langum V
Prairie Madness: Mental Illness and Norwegian Immigration to North America in the Late Nineteenth and Early Twentieth Centuries.
Lit Med: 2023, 41(1);207-229
[PubMed:38662040] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Herges K
Becoming-Amazon: Femininity, Embodiment, and Sexuality in a Photographic and Digital Breast Cancer Project.
Lit Med: 2023, 41(1);93-122
[PubMed:38662035] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Jones SR, Mathews A, Colbert K, Jain M, Simon B, Usher D, McGoy SL
Popular Culture and Shaping HIV Perception.
J Health Care Poor Underserved: 2023, 34(3S);27-36
[PubMed:38661914] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Breheny M
The Trouble with Child Poverty.
Perspect Biol Med: 2023, 66(4);566-578
[PubMed:38661845] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Vincent J, Fortunati L
How Prepaid Billing in Italy Helped Shape the Global Diffusion of Mobile Phones.
Technol Cult: 2024, 65(1);293-314
[PubMed:38661802] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Eales L, Banegas J, Cherubini FDS, Ibrahim SA, Ahn RJ, Nelson MR, Dwivedi R, Ferguson GM
Screening parent-adolescent relationships, screen behaviors, tridimensional acculturation, and health among Black immigrant and refugee adolescents during dual pandemics.
J Fam Psychol: 2024 Apr 25;
[PubMed:38661641] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wenzel J, Seideman C, Semins MJ
Occupational Radiation Exposure During Pregnancy: A Survey of Urologists on Perception, Experience, and Practice Patterns.
J Endourol: 2024 Apr 25;
[PubMed:38661543] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Leonardsen AL, Brevik L
Cell Phones in the OR: A Cross-Sectional Study of Norwegian Perioperative Nurses' Knowledge, Practice, and Attitudes.
AORN J: 2024 May, 119(5);e1-e10
[PubMed:38661447] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Pratiwi RA, Avidhianita D, Margono A, Julianto I, Nyoman Putri Artiningsih DA, Megantoro A
Potential Use of L-Arginine Amino Acids towards Proliferation and Migratory Speed Rate of Human Dental Pulp Stem Cells (hDPSCs).
Eur Endod J: 2024 Apr 25;
[PubMed:38661064] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Collins MKR, Lazard AJ, Dillman Carpentier F, Comello ML, Benedict C, Kent EE, Yu C
Reel reflections: the role of entertainment media narratives in coping among young adult cancer survivors.
J Psychosoc Oncol: 2024 Apr 25;1-22
[PubMed:38661002] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Van Borek S, Logie CH, Mbende B, Ghoma Linguissi LS, MacKenzie F, Ouedraogo A, Lad A, Boumba A, Gittings L, Loemba H
Esengo ya Bosembo ("Joy of Equity"): Development of an Advocacy Video to Reduce Stigma and to Promote Sexual and Reproductive Health and Rights of Women Sex Professionals in Pointe-Noire, Congo Republic.
Health Promot Pract: 2024 Apr 25;15248399241245053
[PubMed:38660994] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Higashi Y, Imafuku S, Tsuruta N, Murotani K, Western Japan Inflammatory Skin Disease Research Group
Systemic therapy for psoriasis and the risk of cutaneous infections.
J Dermatol: 2024 Apr 25;
[PubMed:38660962] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Andreassen P, Jensen SD, Bruun JM, Sandbæk A
Managing the new wave of weight loss medication in general practice: A qualitative study.
Clin Obes: 2024 Apr 25;e12666
[PubMed:38660941] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zheng X, Li C, Ali S, Adebayo TS
Global chessboard: Analyzing how geopolitical risk shapes renewable energy technology investments.
Risk Anal: 2024 Apr 25;
[PubMed:38660914] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao SC, Li H, Wang M, Zhao YH, Li XJ, Jin SY
[ADAMTS13-Mediated Proteolytic Cleavage of Unusually Large von Willebrand Factor Polymers on Endothelial Cells in the Absence of Fluid Shear Stress].
Zhongguo Shi Yan Xue Ye Xue Za Zhi: 2024 Apr, 32(2);532-540
[PubMed:38660863] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Hawkins L, Farrow C, Clayton M, Thomas JM
Can social media be used to increase fruit and vegetable consumption? A pilot intervention study.
Digit Health: 2024 Jan-Dec, 10;20552076241241262
[PubMed:38660624] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Riboldi I, Calabrese A, Piacenti S, Capogrosso CA, Paioni SL, Bartoli F, Carrà G, Armes J, Taylor C, Crocamo C
Understanding University Students' Perspectives towards Digital Tools for Mental Health Support: A Cross-country Study.
Clin Pract Epidemiol Ment Health: 2024, 20;e17450179271467
[PubMed:38660572] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cero I, Luo J, Falligant JM
Lexicon-Based Sentiment Analysis in Behavioral Research.
Perspect Behav Sci: 2024 Mar, 47(1);283-310
[PubMed:38660506] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cyr B, Cabrera Ranaldi EDLRM, Hadad R, Dietrich WD, Keane RW, de Rivero Vaccari JP
Extracellular vesicles mediate inflammasome signaling in the brain and heart of Alzheimer's disease mice.
Front Mol Neurosci: 2024, 17;1369781
[PubMed:38660388] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Venkataraman P, Nagendra P, Ahlawat N, Brajesh RG, Saini S
Convergent genetic adaptation of Escherichia coli in minimal media leads to pleiotropic divergence.
Front Mol Biosci: 2024, 11;1286824
[PubMed:38660375] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mojoudi M, Taggart MS, Kharga A, Chen H, Dinicu AT, Wilks BT, Markmann JF, Toner M, Tessier SN, Yeh H, Uygun K
Anti-apoptotic treatment of warm ischemic male rat livers in machine perfusion improves symptoms of ischemia-reperfusion injury.
Heliyon: 2024 Apr 30, 10(8);e29519
[PubMed:38660283] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Balasubramanian M, Girija S
Overexpression of AtMYB12 transcription factor simultaneously enhances quercetin-dependent metabolites in radish callus.
Heliyon: 2024 Apr 30, 10(8);e27053
[PubMed:38660267] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zeng L, Asif M
Advertisement design in dynamic interactive scenarios using DeepFM and long short-term memory (LSTM).
PeerJ Comput Sci: 2024, 10;e1937
[PubMed:38660215] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mnassri K, Farahbakhsh R, Chalehchaleh R, Rajapaksha P, Jafari AR, Li G, Crespi N
A survey on multi-lingual offensive language detection.
PeerJ Comput Sci: 2024, 10;e1934
[PubMed:38660178] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Poldee S, Metheetrairut C, Suthammarak W, Trakarnsanga K
Angiotensin II promotes erythroid proliferation in a three-stage erythroid culture system.
MethodsX: 2024 Jun, 12;102714
[PubMed:38660027] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kim S, Kim K, Wonjeong Jo C
Accuracy of a large language model in distinguishing anti- and pro-vaccination messages on social media: The case of human papillomavirus vaccination.
Prev Med Rep: 2024 Jun, 42;102723
[PubMed:38659997] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Palacio PL, Greenwald J, Nguyen KT, Shantaram D, Butsch BL, Kim Y, Dattu MH, Noria S, Brethauer SA, Needleman BJ, Wysocki V, Hsueh W, Reátegui E, Magaña SM
Novel multiparametric bulk and single EV pipeline for adipose cell-specific biomarker discovery in paired human biospecimens.
bioRxiv: 2024 Apr 19;
[PubMed:38659953] [DOI] ( e)

Olum R, Ahaisibwe B, Atuhairwe I, Balizzakiwa T, Kizito P, Apiyo M, Kalanzi J, Nabawanuka A, Bahatungire R, Kerry V
Readiness To Manage Ebola Virus Disease Among Emergency Healthcare Workers in Uganda: A Nationwide Multicenter Survey.
Res Sq: 2024 Apr 9;
[PubMed:38659914] [DOI] ( e)

Siddiq MA, Duveau F, Wittkopp PJ
Plasticity and environment-specific relationships between gene expression and fitness in Saccharomyces cerevisiae.
bioRxiv: 2024 Apr 15;
[PubMed:38659876] [DOI] ( e)

Chen T, Way R, Templeton H, Ball D, Cheng MH, Tobet S
A Microphysiological System for Studying Barrier Health of Live Tissues in Real Time.
Res Sq: 2024 Apr 12;
[PubMed:38659839] [DOI] ( e)

Camacho KG, Moore DCBC, Junqueira-Marinho MF, Gomes Junior SC, Reis AT, Abramov DM
Lockdown during the COVID-19 pandemic: lessons from a polarized scenario in Brazil.
Front Psychol: 2024, 15;1310594
[PubMed:38659692] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Antoniou PE, Varella A, Pickering JD, Chatzimallis C, Moumtzi V, Bamidis PD
Thematic analysis of stakeholder perceptions for co-creative healthcare XR resource design and development; traversing a minefield of opportunities.
Front Digit Health: 2024, 6;1341349
[PubMed:38659657] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Loganathan A, Bozdogan B, Manohar P, Nachimuthu R
Phage-antibiotic combinations in various treatment modalities to manage MRSA infections.
Front Pharmacol: 2024, 15;1356179
[PubMed:38659581] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Larsen RE, Hole K, Selle ML, Johannessen Landmark C, Krogstad T, Holm LB
Access to a tailored mobile application enhances medication adherence among young users of antidepressants.
Front Pharmacol: 2024, 15;1379700
[PubMed:38659579] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Saleh LM, Aly MG, Alhedaithy A, AlAli S
Tympanostomy Tube Insertion Versus Myringotomy or Observation in Managing Otitis Media With Effusion Following Radiotherapy for Nasopharyngeal Carcinoma: An Updated Review.
Cureus: 2024 Mar, 16(3);e56905
[PubMed:38659557] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jung S, Sul H, Oh D, Jung YG, Lee J, Hyun SH
Slow freezing cryopreservation of Korean bovine blastocysts with an additional sucrose pre-equilibration step.
Front Vet Sci: 2024, 11;1400899
[PubMed:38659455] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lin ST, Li HJ, Li YZ, Chen QQ, Ye JY, Lin S, Cai SQ, Sun JG
Diagnostic performance of contrast-enhanced mammography for suspicious findings in dense breasts: A systematic review and meta-analysis.
Cancer Med: 2024 Apr, 13(8);e7128
[PubMed:38659408] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Seo YE, Lim CJ, Lim JW, Kim JS, Oh HH, Ma KY, You GR, Im CM, Lee BC, Joo YE
Successful Transcatheter Arterial Embolization of Abdominal Wall Hematoma from the Left Deep Circumflex Iliac Artery after Abdominal Paracentesis in a Patient with Liver Cirrhosis: Case Report and Literature Review.
Korean J Gastroenterol: 2024 Apr 25, 83(4);167-171
[PubMed:38659254] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Pritchard P, Robinson N, Saul A, Shrubb J, Stavisky J, Dean R
Horse owner perceptions of equine veterinary nursing roles in the United Kingdom.
Vet Rec: 2024 Apr 24;e4148
[PubMed:38659211] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sun Z, Kong Y, Lan L, Meng Y, You T, Pauer R, Wang H, Zhang Y, Tang M, deMello A, Liang Y, Hu J, Wang J
A High Efficiency, Low Resistance Antibacterial Filter Formed by Dopamine-Mediated In Situ Deposition of Silver onto Glass Fibers.
Small: 2024 Apr 24;e2301074
[PubMed:38659180] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sun J, Pan W
Self-Correction or Other-Correction: The Effects of Source Consistency and Ways of Correction on Sharing Intention of Health Misinformation Correction.
Health Commun: 2024 Apr 24;1-11
[PubMed:38659151] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pretorius K, Kang S, Choi E
Photos Shared on Facebook in the Context of Safe Sleep Recommendations: Content Analysis of Images.
JMIR Pediatr Parent: 2024 Apr 23, 7;e54610
[PubMed:38659146] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Prochazkova M, Dreyzin A, Shao L, Garces P, Cai Y, Shi R, Pelayo A, Kim YS, Pham V, Frodigh SE, Fenton S, Karangwa C, Su Y, Martin K, Zhang N, Highfill SL, Somerville RP, Shah NN, Stroncek DF, Jin P
Deciphering the importance of culture pH on CD22 CAR T-cells characteristics.
J Transl Med: 2024 Apr 24, 22(1);384
[PubMed:38659083] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jenabzadeh T, Bohner L, Köppe J, Kleinheinz J, Hanisch M, Oelerich O
Temporomandibular disorders in individuals with Marfan syndrome: an exploratory analysis.
Head Face Med: 2024 Apr 24, 20(1);26
[PubMed:38659050] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Namazi SA, Sadeghi S
The immediate impacts of TV programs on preschoolers' executive functions and attention: a systematic review.
BMC Psychol: 2024 Apr 24, 12(1);226
[PubMed:38659021] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sיhafran Tikva S, Gabay G, Shkoler O, Kagan I
Association of quality of nursing care with violence load, burnout, and listening climate.
Isr J Health Policy Res: 2024 Apr 24, 13(1);22
[PubMed:38659017] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Naamneh R, Bodas M
The effect of electronic medical records on medication errors, workload, and medical information availability among qualified nurses in Israel- a cross sectional study.
BMC Nurs: 2024 Apr 24, 23(1);270
[PubMed:38658976] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dani S, Schütz K, Dikici E, Bernhardt A, Lode A
The effect of continuous long-term illumination with visible light in different spectral ranges on mammalian cells.
Sci Rep: 2024 Apr 24, 14(1);9444
[PubMed:38658667] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Krishna KV, Balasubramanian B, Park S, Bhattacharya S, Kadanthottu Sebastian J, Liu WC, Pappuswamy M, Meyyazhagan A, Kamyab H, Chelliapan S, Malaviya A
Conservation of Endangered Cordyceps sinensis Through Artificial Cultivation Strategies of C. militaris, an Alternate.
Mol Biotechnol: 2024 Apr 24;
[PubMed:38658470] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Subbarayan R, Murugan Girija D, Raja STK, Krishnamoorthy A, Srinivasan D, Shrestha R, Srivastava N, Ranga Rao S
Conditioned medium-enriched umbilical cord mesenchymal stem cells: a potential therapeutic strategy for spinal cord injury, unveiling transcriptomic and secretomic insights.
Mol Biol Rep: 2024 Apr 24, 51(1);570
[PubMed:38658405] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Parecha D, Alfano A, Cimini D, Schiraldi C
Vegan grade medium component screening and concentration optimization for the fermentation of the probiotic strain Lactobacillus paracasei IMC 502® using Design of Experiments.
J Ind Microbiol Biotechnol: 2024 Apr 24;
[PubMed:38658186] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Murtomäki A, Helevä A, Torkki P, Haukka J, Julkunen-Iivari A, Lemmetyinen R, Mäkelä M, Dietz A, Nuutinen M, Toppila-Salmi S
Comorbidities of chronic rhinosinusitis in children and adults.
Clin Transl Allergy: 2024 Apr, 14(4);e12354
[PubMed:38658181] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

So KC, Kam KK, Tang GHL, Lee APW
Feasibility of Using TriClip Guide for Combined MitraClip and TriClip Transcatheter Edge-to-Edge Repair: First-in-Human Experience.
JACC Cardiovasc Interv: 2024 Apr 22, 17(8);1071-1072
[PubMed:38658124] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Wackett LP
Microwell fluoride assay screening for enzymatic defluorination.
Methods Enzymol: 2024, 696;65-83
[PubMed:38658089] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Wen X, Brothers T, Ward KE, Kogut S
Reducing the risks of prenatal opioid exposure in children.
BMJ: 2024 Apr 24, 385;q803
[PubMed:38658037] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Alsafar FA, Alsaad AJ, Albukhaytan WA
Prevalence of adult attention deficit hyperactivity disorder (ADHD) among medical students in the Eastern Province of Saudi Arabia.
Saudi Med J: 2024 Apr, 45(4);397-404
[PubMed:38657995] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Viegas C, Peixoto C, Gomes B, Dias M, Cervantes R, Pena P, Slezakova K, Pereira MDC, Morais S, Carolino E, Twarużek M, Viegas S, Caetano LA
Assessment of Portuguese fitness centers: bridging the knowledge gap on harmful microbial contamination with focus on fungi.
Environ Pollut: 2024 Apr 22;123976
[PubMed:38657893] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Henning P, Westerlund A, Horkeby K, Lionikaite V, Nilsson KH, Movérare-Skrtic S, Conaway HH, Lerner UH
VITAMIN A ENHANCED PERIOSTEAL OSTEOCLASTOGENESIS IS ASSOCIATED WITH INCREASED NUMBER OF TISSUE-DERIVED MACROPHAGES/OSTEOCLAST PROGENITORS.
J Biol Chem: 2024 Apr 22;107308
[PubMed:38657862] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tod NP, Vogelauer M, Cheng C, Karimian A, Schmollinger S, Camacho D, Kurdistani SK
The role of histone H3 leucine 126 in fine-tuning the copper reductase activity of nucleosomes.
J Biol Chem: 2024 Apr 22;107314
[PubMed:38657861] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao K, Wang S, Bai M, Wang S, Li F
Distribution, seasonal variation and ecological risk assessment of phthalates in the Yitong River, a typical urban watercourse located in Northeast China.
Sci Total Environ: 2024 Apr 22;172696
[PubMed:38657800] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Abuhassan Q, Silva MI, Tamimi RA, Khadra I, Batchelor HK, Pyper K, Halbert GW
A novel simulated media system for in vitro evaluation of bioequivalent intestinal drug solubility.
Eur J Pharm Biopharm: 2024 Apr 22;114302
[PubMed:38657741] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

McCready D, Arem H, Duarte DA, Dennis K, Ball N, Cafferty LA, Hinds P, Howlader A, Berg CJ
A digital, coach-assisted intervention to address the psychosocial needs of young adult cancer survivors: Randomized controlled trial protocol and intervention adaptation process.
Contemp Clin Trials: 2024 Apr 22;107545
[PubMed:38657732] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cerda Á, Gonzalez M, Rodríguez C, González H, Serrano J, Leiva E
Feammox bacterial biofilm formation in HFMB.
Chemosphere: 2024 Apr 22;142072
[PubMed:38657691] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wen Y, Yang L, Li X, Ma X, Pang Y
Combined percutaneous-endoscopic puncture rendezvous technique for biliary-enteric anastomotic occlusion after pancreaticoduodenectomy.
Endoscopy: 2024 Dec, 56(S 01);E364-E365
[PubMed:38657673] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Nakamura J, Hikichi T, Hashimoto M, Kato T, Yanagita T, Takagi T, Ohira H
Pull-back myotomy to prevent mucosal injury during peroral endoscopic myotomy for jackhammer esophagus.
Endoscopy: 2024 Dec, 56(S 01);E362-E363
[PubMed:38657672] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Tanisaka Y, Mizuide M, Fujita A, Shin T, Sugimoto K, Jinushi R, Ryozawa S
Peroral cholangioscopy-guided lithotripsy using a novel thin cholangioscope under balloon enteroscopy for Roux-en-Y anastomosis.
Endoscopy: 2024 Dec, 56(S 01);E360-E361
[PubMed:38657671] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zhang R, Yu T, Ji R
Kill two birds with one stone: Flexible cholangioscopy for treatment of common bile duct stone and identification of suspicious gallbladder wall thickening.
Endoscopy: 2024 Dec, 56(S 01);E358-E359
[PubMed:38657670] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zeng J, Deng Z, Ding S
Difficult management of pancreatic pseudocyst drainage in a 4-year-old child.
Endoscopy: 2024 Dec, 56(S 01);E356-E357
[PubMed:38657669] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Olabintan O, Voulgaris T, Ayubi H, Thrumurthy S, Haji A, Hayee B
Endoscopic sutured purse-string resection: a novel technique for resection of large gastric subepithelial lesions.
Endoscopy: 2024 Dec, 56(S 01);E352-E353
[PubMed:38657668] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Shinnawi S, Khoury M, Cohen-Vaizer M, Cohen JT, Gordin A
Intracranial complications of acute mastoiditis: Surgery not always necessary.
Am J Otolaryngol: 2024 Apr 19, 45(4);104299
[PubMed:38657531] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rezaee Semnani M, Mirzaasgari Z, Ariaei A, Haghi Ashtiani B
Evaluation of carotid Intima-Media Thickness (IMT) in amyotrophic lateral sclerosis disease using ultrasonography.
J Clin Neurosci: 2024 Apr 23, 124;67-72
[PubMed:38657488] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hrytsyna O, Sladek J, Sladek V, Deng Q, Hrytsyna M
Rayleigh wave propagation in centrosymmetric materials with micro-stiffness, flexoelectric and micro-inertia effects.
Ultrasonics: 2024 Apr 18, 141;107317
[PubMed:38657430] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cottone C, Nanu D, Gawel EM, Corbin AF, Clausen S, Carr M
Otolaryngologic sequelae of Ehlers Danlos Syndrome in pediatric patients.
Int J Pediatr Otorhinolaryngol: 2024 Apr 22, 180;111959
[PubMed:38657428] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lou Z, Lou Z, Lv T, Chen Z
Effects of no perforation margin trimming and EAC packing in cartilage underlay myringoplasty for chronic large perforations in children.
Int J Pediatr Otorhinolaryngol: 2024 Apr 14, 180;111956
[PubMed:38657426] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bauducco S, Pillion M, Bartel K, Reynolds C, Kahn M, Gradisar M
A bidirectional model of sleep and technology use: A theoretical review of How much, for whom, and which mechanisms.
Sleep Med Rev: 2024 Apr 15, 76;101933
[PubMed:38657359] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Xiang T, Shi C, Guo Y, Zhang J, Min W, Sun J, Liu J, Yan X, Liu Y, Yao L, Mao Y, Yang X, Shi J, Yan B, Qu G, Jiang G
Effect-directed analysis of androgenic compounds from sewage sludges in China.
Water Res: 2024 Apr 20, 256;121652
[PubMed:38657313] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Donnelly K, Ryan WH, Nelson LD
Once and Again: Repeated Viewing Affects Judgments of Spontaneity and Preparation.
Psychol Sci: 2024 Apr 24;9567976241242462
[PubMed:38657237] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fu Y, Li Z, Zhao S, Hou H, Chai Y
Reconfigurable aqueous 3D printing with adaptive dual locks.
Sci Adv: 2024 Apr 26, 10(17);eadk4080
[PubMed:38657077] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Coelho SM, Rosen JG, Schulz G, Meek K, Shipp L, Singh C, Willis K, Best A, Mcingana M, Mcloughlin J, Hausler H, Beyrer C, Baral SD, Schwartz SR
A decade of PrEP: the evolution of HIV pre-exposure prophylaxis content and sentiments in South African print news media, 2012-2021.
Cult Health Sex: 2024 Apr 24;1-17
[PubMed:38656915] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yan Y, Dai L, Wang T, Zhang Y
Damage-repair events increase the instability of cortical microtubules in Arabidopsis.
Mol Biol Cell: 2024 Apr 24;mbcE23110461
[PubMed:38656813] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Strom AR, Eeftens JM, Polyachenko Y, Weaver CJ, Watanabe HF, Bracha D, Orlovsky ND, Jumper CC, Jacobs WM, Brangwynne CP
Interplay of condensation and chromatin binding underlies BRD4 targeting.
Mol Biol Cell: 2024 Apr 24;mbcE24010046
[PubMed:38656803] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Arena S, Adams M, Burns J
Exploring the Use of Customized Links to Improve Electronic Engagement With Sexual and Reproductive Health Care Among Young African American Male Individuals: Web-Based Survey Study.
JMIR Form Res: 2024 Apr 24, 8;e48371
[PubMed:38656772] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Marcora MS, Mattera VS, Goñi P, Aybar F, Correale JD, Pasquini JM
Iron deficiency in astrocytes alters cellular status and impacts on oligodendrocyte differentiation.
J Neurosci Res: 2024 Apr, 102(4);e25334
[PubMed:38656648] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Bagde A, Mosley-Kellum K, Spencer S, Singh M
3D DLP-printed cannabinoid microneedles patch and its pharmacokinetic evaluation in rats.
J Pharm Pharmacol: 2024 Apr 24;
[PubMed:38656627] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jucá AM, Santana Jorge O, Moreira YR, Lotto M, Sá Menezes T, Cruvinel T
Uncovering a pseudoscience: an analysis of 'biological dentistry' Instagram posts.
Acta Odontol Scand: 2024 Apr 24, 83;180-189
[PubMed:38656559] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Krupa-Małkiewicz M, Ochmian I, Figiel-Kroczyńska M
Organic Supplementation of Vaccinium corymbosum Micropropagation Media.
Methods Mol Biol: 2024, 2788;197-207
[PubMed:38656515] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Gangwar N, Balraj K, Rathore AS
Explainable AI for CHO cell culture media optimization and prediction of critical quality attribute.
Appl Microbiol Biotechnol: 2024 Apr 24, 108(1);308
[PubMed:38656382] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Vranic S, Gatalica Z
Tumor-type agnostic, targeted therapies make a new step forward: The first tumor-agnostic approval of a HER2-targeted therapy.
Biomol Biomed: 2024 Apr 24;
[PubMed:38656302] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Alito A, Leonardi G, Portaro S, Fenga D, Filardi V, Bruschetta A, Borzelli D, Bonanno F, Sconza C, Tisano A
The Padel phenomenon after the COVID-19: an Italian cross-sectional survey of post-lockdown injuries.
Eur J Transl Myol: 2024 Apr 24;
[PubMed:38656261] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu M, Gao W, Song D, Dong Y, Hong S, Cui C, Shi S, Wu K, Chen J, Xu J, Dong F
A deep learning-based calculation system for plaque stenosis severity on common carotid artery of ultrasound images.
Vascular: 2024 Apr 24;17085381241246312
[PubMed:38656244] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kroon AC, Selm MV
Good Intentions Aside: Stereotype Threat in the Face of Media Strategies to Counter Age Bias.
Res Aging: 2024 Apr 24;1640275241249117
[PubMed:38656230] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ze H, Yang ZL, Li ML, Zhang XG, A YL, Zheng QN, Wang YH, Tian JH, Zhang YJ, Li JF
In Situ Probing the Structure Change and Interaction of Interfacial Water and Hydroxyl Intermediates on Ni(OH)(2) Surface over Water Splitting.
J Am Chem Soc: 2024 Apr 24;
[PubMed:38656110] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

P Fernandes RC, Siqueira JS, Dos Santos MF, Pena PGL, Werneck GL, Burdorf A
Precarious work and methodological challenges to study hard-to-reach populations.
Rev Saude Publica: 2024, 58;12
[PubMed:38656047] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Borges LCR, Marcon SS, Brito GS, Terabe M, Pleutim NI, Mendes AH, Teston EF
Adherence to Covid-19 vaccination during the pandemic: the influence of fake news.
Rev Bras Enferm: 2024, 77(1);e20230284
[PubMed:38655979] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sally EOF, Gomes DS, Dantas LOC, Henriques P
NBCAL violation of products that compete with breastfeeding on the social network Instagram.
Cien Saude Colet: 2024 Apr, 29(4);e20312022
[PubMed:38655976] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Dias FS, Moreira MCN, Santos RP
When disability and homoparenting meet: the adoption of children with disability by same sex couples.
Cien Saude Colet: 2024 Apr, 29(4);e19772023
[PubMed:38655973] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

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