ISA
Large sets of data, like expression profile from many samples, require
analytic tools to reduce their complexity.
The Iterative Signature Algorithm (ISA) was designed to reduce the
complexity of very large sets of data by decomposing it into so-called
"modules". In the context of gene expression data these modules consist of
subsets of genes that exhibit a coherent expression profile only over a
subset of microarray experiments. Genes and arrays may be attributed to
multiple modules and the level of required coherence can be varied resulting
in different "resolutions" of the modular mapping. Since the ISA does not
rely on the computation of correlation matrices (like many other tools), it
is extremely fast even for very large datasets.
Contents
Software for Gene expression data
We developed the eisa
GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.
Requirements, download and installation
To use eisa
you will need a working GNU R installation.
As of the 23rd of April, 2010, the eisa
package is an official BioConductor package.
eisa
depends on a number of other R packages: isa2
, Biobase
, AnnotationDbi
, Category
, genefilter
, DBI
. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in
source("http://bioconductor.org/biocLite.R") biocLite("eisa")
at your R prompt. See the eisa package page at the BioConductor website for details.
Alternatively, you can also download the package from here:
- Microsoft Windows (32 bit)
Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files
' and select the saved file. - Microsoft Windows (64 bit)
Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files
' and select the saved file. - Mac OSX (Leopard)
Download and install this file. - Linux and Unix systems, R source package
Download this file, save it in a temporary directory, and start R. Install the downloaded package using theinstall.packages()
function: give the full path of the saved file and use the 'repos=NULL
' argument ofinstall.packages()
.
License
The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.
Software for any tabular data
The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2
R package for such an analysis.
Requirements
No additional R package is required to install and use isa2
. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential
package.
Installation
The isa2
package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in
install.packages("isa2")
at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.
License
The isa2
package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.
Tutorials
The Iterative Signature Algorithm for Gene Expression Data
Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML
PDF
Rnw
R code
ISA and the biclust package
The biclust
package implements several biclustering algorithms. It is possible to convert the results of biclust
to transcription modules and vice-versa.
HTML
PDF
Rnw
R code
Tissue specific expression with the Iterative Signature Algorithm
Hierarchical module trees
A module tree is the hierarchical modular organization of a data set.
HTML
PDF
Rnw
R code
The Iterative Signature Algorithm
Tutorial for the analysis of tabular data with the isa2
R package.
HTML
PDF
Rnw
R code
Running ISA in parallel
Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi
and snow
R packages.
HTML
PDF
Rnw
R code
ISA internals
Matlab package
You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.
Papers
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Behavioural 'nudging' interventions to reduce low-value care for low back pain in the emergency department (NUDG-ED): protocol for a 2×2 factorial, before-after, cluster randomised trial.
BMJ Open: 2024 Mar 28, 14(3);e079870
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Struys I, Velázquez C, Devriendt K, Godderis L, Segers H, Thienpont B, van Boxtel R, Van Calsteren K, Voet T, Wolters V, Lenaerts L, Amant F
Evaluating offspring Genomic and Epigenomic alterations after prenatal exposure to Cancer treatment In Pregnancy (GE-CIP): a multicentric observational study.
BMJ Open: 2024 Mar 28, 14(3);e081833
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( e)
Gupta C, Malhotra I
Encoding material female bodies through cosmetic surgeries: a study of cultural economy and the biometric dynamics of Indian Hindi film stars.
Med Humanit: 2024 Mar 28;
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( a)
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( e)
Wonderling D, Mariani A, Samarasekera EJ, Wilkinson C, Patel RS, Mills J, Guideline Committee
Secondary prevention of cardiovascular disease, including cholesterol targets: summary of updated NICE guidance.
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( e)
Ngo HV, Thanh Le TT, Vu HN, Hoang H, Ikenaga H, Sato-Matsubara M, Uchida-Kobayashi S, Urushima H, Nguyen KV, Nguyen HT, Shinkawa H, Kubo S, Ohtani N, Enomoto M, Tamori A, Kawada N
Poorly Differentiated Hepatocellular Carcinoma Cells Avoid Apoptosis by Interacting with T Cells via CD40-CD40L Linkage.
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Sheikh MAA, Butt MQS, Afroz A, Rasul F, Irfan M, Khattak MS, Zeeshan N
Approach towards sustainable leather: Characterization and effective industrial application of proteases from Bacillus sps. for ecofriendly dehairing of leather hide.
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( a)
Sasi Rekha V, Sankar K, Rajaram S, Karuppiah P, Dawoud TMS, Syed A, Elgorban AM
Unveiling the impact of additives on structural integrity, thermal and color stability of C-phycocyanin - Agar hydrocolloid.
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Heck KL, Si L, Jung DJ, Calderón AI
Application of eco-friendly natural deep eutectic solvents (NADES) in HPLC for separation of complex natural products: Current limitations and future directions.
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Vaseur RME, Te Braake E, Beinema T, d'Hollosy WON, Tabak M
Technology-supported shared decision-making in chronic conditions: A systematic review of randomized controlled trials.
Patient Educ Couns: 2024 Mar 21, 124;108267
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Zhang X, Chen L, Liu Y, Li J, Wang M, Cui H, Chen Z, Veer Singh C, Liu K
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J Colloid Interface Sci: 2024 Mar 24, 665;518-525
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Gaesser AM, Usimaki AIJ, Barot DA, Linardi RL, Molugu S, Musante L, Ortved KF
Equine mesenchymal stem cell-derived extracellular vesicle productivity but not overall yield is improved via 3-D culture with chemically defined media.
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Koch DW, Froneberger A, Berglund A, Connard S, Souther A, Schnabel LV
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Sardar G, Biswas A, Singh S, Kabra D
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Chen F, Zou G, Wu Y, Ou-Yang L
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Bioinformatics: 2024 Mar 28;
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Udo S, Ogbu PS, Tsaku PA, Tukur A, NewMarch A
An evaluation of mental health integration in the neglected tropical diseases program in Zamfara, North-west Nigeria.
Int Health: 2024 Mar 28, 16(Supplement_1);i52-i59
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Jiao Y, Zhao H, Lu L, Zhao X, Wang Y, Zheng B
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PLoS One: 2024, 19(3);e0298262
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Boyd AT, Rocconi LM, Morrow JA
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PLoS One: 2024, 19(3);e0300356
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Shi Y, Stanmore E, McGarrigle L, Todd C
Social-media based Health Education plus Exercise Programme (SHEEP) to improve muscle function among community-dwelling young-old adults with possible sarcopenia in China: A study protocol for intervention development.
PLoS One: 2024, 19(3);e0286490
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Yu Y, Lu G, Fung Sin K, Yu Z
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PLoS One: 2024, 19(3);e0300123
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Karadag AS, Kandi B, Sanlı B, Ulusal H, Basusta H, Sener S, Calıka S
Social Media Use in Dermatology in Turkey: Challenges and Tips for Patient Health.
JMIR Dermatol: 2024 Mar 28, 7;e51267
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Herrell C, Foster S
Can't stop won't stop: problematic phone use, sleep quality, and mental health in U.S. Graduate students.
J Am Coll Health: 2024 Mar 28;1-7
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Nable JV, Davis MJ, Davis JE
Utilization of the social media platform Snapchat in the care of an acutely suicidal individual.
J Am Coll Health: 2024 Mar 28;1-3
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Nastasi BK, Clinton A
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Sch Psychol: 2024 Mar, 39(2);119-121
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Pontell ME, Taylor JA
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Plast Reconstr Surg: 2024 Apr 1, 153(4);894-895
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Costa FG, Mills KB, Crosby HA, Horswill AR
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Chi L, Boucaut R, Li LSK, Fryer CE, Kumar S
Australian physiotherapists' knowledge and views on the relationship between climate change, health, and physiotherapy.
Physiother Res Int: 2024 Apr, 29(2);e2085
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( p)
Ting SH, Netto NM
Knowledge and Perceptions of the Public VIS-À-VIS Colorectal Cancer Information in Newspapers in Malaysia.
Asian Pac J Cancer Prev: 2024 Mar 1, 25(3);987-997
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( e)
Gawde NC, Quazi Syed Z
Determinants of Quit Attempts and Short-Term Abstinence among Smokeless Tobacco Users in India: Global Adult Tobacco Survey, 2016-17.
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Nygaard M, Andersen TO, Rod NH
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Zhang X, Chen A, Jin J
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Public Underst Sci: 2024 Mar 28;9636625241237927
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( a)
Cho Y, Lee JG, Ryu GH, Song JJ, Im GJ, Chae SW
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Ann Otol Rhinol Laryngol: 2024 Mar 28;34894241241889
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Sousa AR, Gonçalves DC, Neves BG, Santos-Coquillat A, Oliveira MB, Mano JF
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Adv Healthc Mater: 2024 Mar 28;e2304012
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Kluger N, Taieb C, Bedran J, Payraud L, Beausillon C, Sammain A, Gallinger J, Comte C
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( a)
Laabidi S, Medhioub M, Khsiba A, Bach Ali A, Ben Mohamed A, Hamzaoui L
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Tunis Med: 2024 Mar 5, 102(3);170-175
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( e)
Fang TY, Lin TY, Shen CM, Hsu SY, Lin SH, Kuo YJ, Chen MH, Yin TK, Liu CH, Lo MT, Wang PC
Algorithm-Driven Tele-otoscope for Remote Care for Patients With Otitis Media.
Otolaryngol Head Neck Surg: 2024 Mar 28;
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( a)
Karunarathne S, Kannangara YY, Ratwani CR, Sandaruwan C, Wijesinghe WPSL, Kamali AR, Abdelkader AM
Stoichiometrically optimized e(g) orbital occupancy of Ni-Co oxide catalysts for Li-air batteries.
Nanoscale: 2024 Mar 28;
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( a)
Chowdhury S, Ahmed S, Alam S, Callaghan CT, Das P, Di Marco M, Di Minin E, Jarić I, Labi MM, Rokonuzzaman M, Roll U, Sbragaglia V, Siddika A, Bonn A
A protocol for harvesting biodiversity data from Facebook.
Conserv Biol: 2024 Mar 28;e14257
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( a)
Yamamoto R, Kitamura Y, Kon T
Chlamydomonas dynein-preassembly-deficient mutants exhibit characteristic ciliary responses to viscous media.
MicroPubl Biol: 2024, 2024;
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Duong TN, Le MH, Le TV, Ha TT, Roudbary M, Beardsley J
Exploring fungal diversity in Vietnam: A citizen science initiative.
One Health: 2024 Jun, 18;100711
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AlAufi NS, Chan YM, Chin YS, Ahmad N, Mohd-Yusof BN, Waly MI, Al Busaidi N, Al-Shuriqi S, Al Amri K, Al Bulushi F, Al Bulushi S
Effectiveness of Mediterranean Diet on Daytime Sleepiness among Individuals with Type 2 Diabetes Mellitus in Oman.
Sleep Sci: 2024 Mar, 17(1);e45-e54
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[DOI]
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Tanwar N, Mahto BK, Rookes JE, Cahill DM, Bansal KC, Lenka SK
Chloroplast transformation in new cultivars of tomato through particle bombardment.
3 Biotech: 2024 Apr, 14(4);120
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[DOI]
( o)
Huang C, Luo J, Shan Z, Zhen T, Li J, Ma Q, Wei L, Liang J, Xie X, Zheng Y
The value of the improved percutaneous and intravenous contrast-enhanced ultrasound diagnostic classification in sentinel lymph nodes of breast cancer.
Quant Imaging Med Surg: 2024 Mar 15, 14(3);2391-2404
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[DOI]
( o)
Ahmed S, Ibbotson D, Somodi C, Shamberger PJ
Zinc Nitrate Hexahydrate Pseudobinary Eutectics for Near-Room-Temperature Thermal Energy Storage.
ACS Appl Eng Mater: 2024 Mar 22, 2(3);530-541
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[DOI]
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Helal G, Xu Z, Zuo W, Yu Y, Liu J, Su H, Xu J, Li H, Cheng G, Zhao P
Boosting oxygen evolution reaction rates with mesoporous Fe-doped MoCo-phosphide nanosheets.
RSC Adv: 2024 Mar 26, 14(15);10182-10190
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[DOI]
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Wan M, Liu X, Zhang M, Cui Z, Zhao W, Li J, Lin S
Stigmatized Stroke? A Qualitative Study of Perception of Stroke Among Community Residents With Hypertension.
Int J Public Health: 2024, 69;1606781
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De Sousa I, Dizonno V, LeComte K, Carr A, El Kalza Y, Shymka M, Payette RH, Kuzmuk L, Lyall EME, Grewal J, Smith JMC, Field TS
"We have dealt with so much. There's more coming?": Improving Knowledge About Brain Health in Adults Living With Congenital Heart Disease.
CJC Pediatr Congenit Heart Dis: 2024 Feb, 3(1);1-10
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[DOI]
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Rémillard-Labrosse G, Cohen S, Boucher É, Gagnon K, Vasilev F, Mihajlović AI, FitzHarris G
Oocyte and embryo culture under oil profoundly alters effective concentrations of small molecule inhibitors.
Front Cell Dev Biol: 2024, 12;1337937
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Tabassum N, Khan F, Jeong GJ, Jo DM, Kim YM
Silver nanoparticles synthesized from Pseudomonas aeruginosa pyoverdine: Antibiofilm and antivirulence agents.
Biofilm: 2024 Jun, 7;100192
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[DOI]
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Smith N, Donaldson M, Mitton C, Lee E
Communication in disasters to support families with children with medical complexity and special healthcare needs: a rapid scoping review.
Front Public Health: 2024, 12;1229738
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Bevilacqua R, Stara V, Amabili G, Margaritini A, Benadduci M, Barbarossa F, Maranesi E, Rigaud AS, Dacunha S, Palmier C, Moller J, Browne R, Ogawa T, Wieching R
e-VITA study protocol: EU-Japan virtual coach for smart aging.
Front Public Health: 2024, 12;1256734
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[DOI]
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Demirel Topel S
Exploring the photocatalytic and photodynamic effects of BODIPY-linked titanium dioxide nanoparticles.
Turk J Chem: 2023, 47(6);1407-1419
[PubMed:38544719]
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[DOI]
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Eren Belgin E, Delibalta CG
Quaternized chitosan/PVA/natural bioactive agent electrospun wound scaffolds: production, characterization, and investigation of release kinetics.
Turk J Chem: 2023, 47(6);1529-1539
[PubMed:38544716]
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[DOI]
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Civan Çavuşoğlu F, Özçelik G, Bayazit ŞS
Removal of toxic Cr(VI) from aqueous medium with effective magnetic carbon-based nanocomposites.
Turk J Chem: 2023, 47(6);1479-1496
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[DOI]
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Aghajanpour F, Soltani R, Afshar A, Abbaszadeh HA, Fadaei Fathabadi F, Moeinian N, Aliaghaei A, Dehghani Nejad A, Mastery Farahani R, Norouzian M, Abdollahifar MA
Sertoli cell-conditioned medium can improve blood-testis-barrier function and spermatogenesis in azoospermia mice induced by scrotal hyperthermia: An experimental study.
Int J Reprod Biomed: 2024 Jan, 22(1);17-30
[PubMed:38544670]
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[DOI]
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Kayo T, Uneda K, Suzuki M
Acupuncture Topics on Twitter (Currently X) in English and Japanese: Co-occurrence Network Analysis.
Cureus: 2024 Feb, 16(2);e54928
[PubMed:38544657]
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[DOI]
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Ahmed S, Jaidka K, Chen VHH, Cai M, Chen A, Emes CS, Yu V, Chib A
Social media and anti-immigrant prejudice: a multi-method analysis of the role of social media use, threat perceptions, and cognitive ability.
Front Psychol: 2024, 15;1280366
[PubMed:38544515]
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[DOI]
( )
Ezerskyte E, Morkvenas A, Venius J, Sakirzanovas S, Karabanovas V, Katelnikovas A, Klimkevicius V
Biocompatible Upconverting Nanoprobes for Dual-Modal Imaging and Temperature Sensing.
ACS Appl Nano Mater: 2024 Mar 22, 7(6);6185-6195
[PubMed:38544503]
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[DOI]
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Encarnacion Ramirez MJ, Mukengeshay JN, Chumtin G, Nurmukhametov R, Baldoncini M, Lafuente J, Rosario AR, Kannan S, Haidara A, Ramirez I, Bozkurt I, Esene I, Kaprovoy S, Konovalov N, Kalangu KK, Musa G, Lawton MT, Chavda VK, Suero Molina E, Montemurro N
The importance of social networks in neurosurgery training in low/middle income countries.
Front Surg: 2024, 11;1341148
[PubMed:38544491]
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[DOI]
( )
Liu Y, Xu B, Li Y, Quek SY, Huang K
Eco-Friendly and Self-Sanitizing Microporous Cellulose Sponge (MCS)-Based Cooling Media for Mitigating Microbial Cross-Contamination in the Food Cold Chain.
Adv Sci (Weinh): 2024 Mar 28;e2309753
[PubMed:38544489]
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[DOI]
( a)
Zhao J, Zhang G, Wu K, Qin F, Fei L, Derome D, Carmeliet J
Dynamic Pore Network Modeling of Imbibition in Real Porous Media with Corner Film Flow.
Langmuir: 2024 Mar 27;
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[DOI]
( a)
Martini F, Pigati M, Mattiauda M, Ponzano M, Piol N, Pigozzi S, Spina B, Cittadini G, Giasotto V, Zawaideh JP
Extra-prostatic extension (EPE) grading system: Correlation with MRI features and integration of capsular enhancement sign (CES) for "enhanced" detection of T3a lesions.
Br J Radiol: 2024 Mar 27;
[PubMed:38544291]
[WorldCat.org:
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[DOI]
( a)
Han Y, Shen H, Yuan F, Ma T, Dai P, Sun Y, Chu H
A Single-Shot Scattering Medium Imaging Method via Bispectrum Truncation.
Sensors (Basel): 2024 Mar 21, 24(6);
[PubMed:38544264]
[WorldCat.org:
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[DOI]
( e)
Zhao X, Zhang Y, Niu Q, Wang L, Xing C, Wang Q, Bao H
Research on the Flow Characteristics and Reaction Mechanisms of Lateral Flow Immunoassay under Non-Uniform Flow.
Sensors (Basel): 2024 Mar 20, 24(6);
[PubMed:38544252]
[WorldCat.org:
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[DOI]
( e)
Wang W, Jing M, Fan Y, Weng W
PixRevive: Latent Feature Diffusion Model for Compressed Video Quality Enhancement.
Sensors (Basel): 2024 Mar 16, 24(6);
[PubMed:38544170]
[WorldCat.org:
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[DOI]
( e)
Son Y, Park JW
Detecting Forged Audio Files Using "Mixed Paste" Command: A Deep Learning Approach Based on Korean Phonemic Features.
Sensors (Basel): 2024 Mar 14, 24(6);
[PubMed:38544136]
[WorldCat.org:
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[DOI]
( e)
Kopciuch D, Hoffmann K, Kus K, Koligat-Seitz A, Ratajczak P, Nowakowska E, Paczkowska A
Analysis of Attitudes and Practices towards the Influenza Vaccine in High-Risk Adults in Poland.
Vaccines (Basel): 2024 Mar 21, 12(3);
[PubMed:38543975]
[WorldCat.org:
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[DOI]
( e)
Kim D, Park SY, Lee G, Kim ES, Jin JS, Kim JY, Lee S, Park JH, Ko YJ
Calcium Chloride Treatment Enhances Antigen Production in Foot-and-Mouth Disease Vaccines for Serotypes SAT1 and SAT3.
Vaccines (Basel): 2024 Feb 23, 12(3);
[PubMed:38543864]
[WorldCat.org:
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[DOI]
( e)
Shang B, Li X, Zhang X, Zhang M, Kong J, Wang J, Tan A, Zhao F, Zhang D
A Novel Transposon Tn7709 Harbors Multidrug Resistance Genes in a Pathogenic Aeromonas media Strain QST31.
Microorganisms: 2024 Mar 13, 12(3);
[PubMed:38543623]
[WorldCat.org:
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[DOI]
( e)
Ratcliffe NA, Mello CB, Castro HC, Dyson P, Figueiredo M
Immune Reactions of Vector Insects to Parasites and Pathogens.
Microorganisms: 2024 Mar 12, 12(3);
[PubMed:38543619]
[WorldCat.org:
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[DOI]
( e)
Calisto N, Navarro L, Iribarren C, Orellana P, Gómez C, Salazar L, Gutiérrez A, Aranda C, González AR, Tello M, Cortés-Cortés P, Gidekel M, Corsini G
Characterization of Antibiotic-Resistance Antarctic Pseudomonas That Produce Bacteriocin-like Compounds.
Microorganisms: 2024 Mar 6, 12(3);
[PubMed:38543581]
[WorldCat.org:
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[DOI]
( e)
Yousfi C, Oueslati S, Daaboul D, Girlich D, Proust A, Bentchouala C, Naas T
Antibiotic Susceptibility Profiles of Bacterial Isolates Recovered from Abscesses in Cattle and Sheep at a Slaughterhouse in Algeria.
Microorganisms: 2024 Mar 5, 12(3);
[PubMed:38543576]
[WorldCat.org:
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[DOI]
( e)
Hurt A, Bibik JD, Martinez-Gomez NC, Hamberger B
Engineering Terpene Production Pathways in Methylobacterium extorquens AM1.
Microorganisms: 2024 Feb 29, 12(3);
[PubMed:38543551]
[WorldCat.org:
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[DOI]
( e)
Boumba VA, Velivasi G, Kourkoumelis N
Ethanol and Higher Alcohols' Production in Fungal and Bacterial Laboratory Cultures and Significance for Forensic Samples.
Microorganisms: 2024 Feb 24, 12(3);
[PubMed:38543513]
[WorldCat.org:
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[DOI]
( e)
Arambula-Maldonado R, Mequanint K
Sol-Gel Derived Gelatin-Bioactive Glass Nanocomposite Biomaterials Incorporating Calcium Chloride and Calcium Ethoxide.
Polymers (Basel): 2024 Mar 8, 16(6);
[PubMed:38543353]
[WorldCat.org:
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[DOI]
( e)
Heidari H, Muanpaopong N, Guner G, Yao HF, Clancy DJ, Bilgili E
A Novel PBM for Nanomilling of Drugs in a Recirculating Wet Stirred Media Mill: Impacts of Batch Size, Flow Rate, and Back-Mixing.
Pharmaceutics: 2024 Mar 2, 16(3);
[PubMed:38543247]
[WorldCat.org:
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[DOI]
( e)
Bitterlich A, Mihorko A, Juhnke M
Design Space and Control Strategy for the Manufacturing of Wet Media Milled Drug Nanocrystal Suspensions by Adopting Mechanistic Process Modeling.
Pharmaceutics: 2024 Feb 26, 16(3);
[PubMed:38543222]
[WorldCat.org:
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[DOI]
( e)
Fan J, Huang X, Dou M, Tang S, Wang G, Fan Y, Luo A, Wang G, Wang Y
Structural Characterization and Immunoenhancing Properties of Polysaccharide CPTM-P1 from Taxus media.
Molecules: 2024 Mar 19, 29(6);
[PubMed:38543007]
[WorldCat.org:
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[DOI]
( e)
Khomenko M, Sokolov A, Tverjanovich A, Bokova M, Kassem M, Usuki T, Bychkov E
Gallium Trichloride Fluid: Dimer Dissociation Mechanism, Local Structure, and Atomic Dynamics.
Molecules: 2024 Mar 19, 29(6);
[PubMed:38542994]
[WorldCat.org:
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[DOI]
( e)
Alguacil FJ
Utilizing Deep Eutectic Solvents in the Recycle, Recovery, Purification and Miscellaneous Uses of Rare Earth Elements.
Molecules: 2024 Mar 19, 29(6);
[PubMed:38542991]
[WorldCat.org:
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[DOI]
( e)
Barany G, Hansen PR
Reflections on a Copenhagen-Minneapolis Axis in Bioorganic Chemistry.
Molecules: 2024 Mar 15, 29(6);
[PubMed:38542953]
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[DOI]
( e)
Imura T, Yanagisawa S, Ikeda Y, Moriyama R, Sakai K, Sakai H, Taira T
Solubilization of Phospholipid by Surfactin Leading to Lipid Nanodisc and Fibrous Architecture Formation.
Molecules: 2024 Mar 14, 29(6);
[PubMed:38542936]
[WorldCat.org:
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[DOI]
( e)
Jeliński T, Przybyłek M, Mianowana M, Misiak K, Cysewski P
Deep Eutectic Solvents as Agents for Improving the Solubility of Edaravone: Experimental and Theoretical Considerations.
Molecules: 2024 Mar 12, 29(6);
[PubMed:38542898]
[WorldCat.org:
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[DOI]
( e)
An W, Wang Q, Chen H, Liu Y, Hu X, Di J
Efficient Recovery of Phosphate from Water Media by Iron-Magnesium Functionalized Lignite: Adsorption Evaluation, Mechanism Revelation and Potential Application Exploration.
Molecules: 2024 Mar 12, 29(6);
[PubMed:38542888]
[WorldCat.org:
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[DOI]
( e)
Rickerby A, Green R
Barriers to Adopting a Plant-Based Diet in High-Income Countries: A Systematic Review.
Nutrients: 2024 Mar 14, 16(6);
[PubMed:38542734]
[WorldCat.org:
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[DOI]
( e)
Gonçalves M, Aiello A, Rodríguez-Pérez M, Accardi G, Burgos-Ramos E, Silva P
Olive Oil Components as Novel Antioxidants in Neuroblastoma Treatment: Exploring the Therapeutic Potential of Oleuropein and Hydroxytyrosol.
Nutrients: 2024 Mar 13, 16(6);
[PubMed:38542729]
[WorldCat.org:
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[DOI]
( e)
Enatsu N, Seino J, Tsuji T, Ogata M
Effectiveness of Sports Nutrition Education Based on Self-Determination Theory for Male University Rowing Athletes: A Randomized Controlled Trial.
Nutrients: 2024 Mar 11, 16(6);
[PubMed:38542710]
[WorldCat.org:
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[DOI]
( e)
Malloy JA, Kemper JA, Partridge SR, Roy R
Empowering Young Women: A Qualitative Co-Design Study of a Social Media Health Promotion Programme.
Nutrients: 2024 Mar 9, 16(6);
[PubMed:38542691]
[WorldCat.org:
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[DOI]
( e)
Silva HJB, Pereira CF, Pereira G, Pereira GAL
Development of Fluorescent Sensors for Biorelevant Anions in Aqueous Media Using Positively Charged Quantum Dots.
Micromachines (Basel): 2024 Mar 9, 15(3);
[PubMed:38542620]
[WorldCat.org:
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[DOI]
( e)
Jiang H, Li Y, Du F, Nie Z, Wei G, Wang Y, Liu X
Numerical Simulations of Combined Dielectrophoresis and Alternating Current Electrothermal Flow for High-Efficient Separation of (Bio)Microparticles.
Micromachines (Basel): 2024 Feb 29, 15(3);
[PubMed:38542592]
[WorldCat.org:
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[DOI]
( e)
Yan S, Rajestari Z, Morse TC, Li H, Kulinsky L
Electrokinetic Manipulation of Biological Cells towards Biotechnology Applications.
Micromachines (Basel): 2024 Feb 29, 15(3);
[PubMed:38542588]
[WorldCat.org:
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[DOI]
( e)
González-Nicolás MÁ, González-Guerrero C, Goicoechea M, Boscá L, Valiño-Rivas L, Lázaro A
Biomarkers in Contrast-Induced Acute Kidney Injury: Towards A New Perspective.
Int J Mol Sci: 2024 Mar 19, 25(6);
[PubMed:38542410]
[WorldCat.org:
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[DOI]
( e)
Simon D, Kacsándi D, Pusztai A, Soós B, Végh E, Kerekes G, Bodoki M, Szamosi S, Szűcs G, Prohászka Z, Németh P, Berki T, Szekanecz Z
Natural Autoantibodies in Biologic-Treated Rheumatoid Arthritis and Ankylosing Spondylitis Patients: Associations with Vascular Pathophysiology.
Int J Mol Sci: 2024 Mar 18, 25(6);
[PubMed:38542402]
[WorldCat.org:
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[DOI]
( e)
Andreoli V, Berni P, Conti V, Ramoni R, Basini G, Grolli S
Mesenchymal Stromal Cells Derived from Canine Adipose Tissue: Evaluation of the Effect of Different Shipping Vehicles Used for Clinical Administration.
Int J Mol Sci: 2024 Mar 18, 25(6);
[PubMed:38542399]
[WorldCat.org:
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[DOI]
( e)
Lenart-Boroń A, Stankiewicz K, Czernecka N, Ratajewicz A, Bulanda K, Heliasz M, Sosińska D, Dworak K, Ciesielska D, Siemińska I, Tischner M
Wounds of Companion Animals as a Habitat of Antibiotic-Resistant Bacteria That Are Potentially Harmful to Humans-Phenotypic, Proteomic and Molecular Detection.
Int J Mol Sci: 2024 Mar 8, 25(6);
[PubMed:38542095]
[WorldCat.org:
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[DOI]
( e)
Zuil-Escobar JC, Martín-Urrialde JA, Mesa-Jiménez JA, Palomo-Carrión R, Martínez-Cepa CB
Telehealth in Informal Caregivers of Stroke Survivors: A Systematic Review.
J Clin Med: 2024 Mar 21, 13(6);
[PubMed:38542035]
[WorldCat.org:
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[DOI]
( e)
Bialecka M, Rac M, Dziedziejko V, Safranow K, Chlubek D, Rać ME
An Evaluation of Plasma TNF, VEGF-A, and IL-6 Determination as a Risk Marker of Atherosclerotic Vascular Damage in Early-Onset CAD Patients.
J Clin Med: 2024 Mar 18, 13(6);
[PubMed:38541966]
[WorldCat.org:
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[DOI]
( e)
Chae M, Yoon H, Lee H, Choi J
Hearing Recovery Prediction for Patients with Chronic Otitis Media Who Underwent Canal-Wall-Down Mastoidectomy.
J Clin Med: 2024 Mar 8, 13(6);
[PubMed:38541783]
[WorldCat.org:
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[DOI]
( e)
Alexander KC, Anderson CW, Agala CB, Tasoudis P, Collins EN, Ding Y, Blackwell JW, Willcox DE, Farivar BS, Kibbe MR, Ikonomidis JS, Akerman AW
Paradoxical Changes: EMMPRIN Tissue and Plasma Levels in Marfan Syndrome-Related Thoracic Aortic Aneurysms.
J Clin Med: 2024 Mar 8, 13(6);
[PubMed:38541774]
[WorldCat.org:
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[DOI]
( e)
Pais-Vieira C, Figueiredo JG, Perrotta A, Matos D, Aguiar M, Ramos J, Gato M, Poleri T, Pais-Vieira M
Activation of a Rhythmic Lower Limb Movement Pattern during the Use of a Multimodal Brain-Computer Interface: A Case Study of a Clinically Complete Spinal Cord Injury.
Life (Basel): 2024 Mar 16, 14(3);
[PubMed:38541720]
[WorldCat.org:
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[DOI]
( e)
Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968]
[WorldCat.org:
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[DOI]
( p)
Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247]
[WorldCat.org:
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[DOI]
( o)
Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187]
[WorldCat.org:
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[DOI]
( o)
Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096]
[WorldCat.org:
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[DOI]
( o)
Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151]
[WorldCat.org:
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[DOI]
( o)
<biblio>
- Kutalik2008NB pmid=18464786 // PDF
- Ihmels2004 pmid=15606968 // PDF
- Ihmels2004a pmid=15044247 // PDF
- Bergmann2004 pmid=14737187 // PDF
- Bergmann2003 pmid=12689096 //PDF
- Ihmels2002 pmid=12134151 // PDF
</biblio>