Difference between revisions of "User:David"

 
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[[Category:Bulletins]]
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<newstitle> An association method for discovering pioneer transcription factor </newstitle>   
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<teaser>
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We just published a new method for discovering new pioneer transcription factors, i.e., transcription factors that play an important role in the establishment and maintenance of
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open chromatin. The method basically associates transcription factor expression with chromatin accessibility genome-wide in multiple cell lines. Applied to the ENCODE data, it
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rediscovers known pioneer transcription factors along with new ones. It shows yet again that novel biological insights can be obtained by sophisticated analysis of large-scale public
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data sets. The paper is published in <a href=http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005311>  Plos Computational Biology </a>.
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<date>24 Jan 2017 </date>
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</teaser>
  
 
'''PhD student'''
 
'''PhD student'''

Revision as of 12:58, 14 February 2017



PhD student

  • email: david.lamparter at unil.ch

Research

I'm interested in data integration to better understand the signal coming from large genome wide association studies. I mainly focussed on pathway analysis where the canonical pathways are tested for involvment in a complex trait.