Computational Phylogenetics
... Molecular Data, Evolutionary Modeling and Computational Tools

Publication List

Dib L., Meyer X., Artimo P., Ioannidis V., Stockinger H., Salamin N., 2015. Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree. BMC Bioinformatics 16 p. 394. [DOI] [Web of Science] [Pubmed]

Laurent S., Robinson-Rechavi M., Salamin N., 2015. Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions. BMC Evolutionary Biology 15 p. 157. [DOI] [Web of Science] [Pubmed]

Pillonel T., Bertelli C., Salamin N., Greub G., 2015. Taxogenomics of the order Chlamydiales. International Journal of Systematic and Evolutionary Microbiology 65(Pt 4) pp. 1381-1393. [DOI] [Web of Science] [Pubmed]

Pirie M.D., Litsios G., Bellstedt D.U., Salamin N., Kissling J., 2015. Back to Gondwanaland: can ancient vicariance explain (some) Indian Ocean disjunct plant distributions? Biology Letters 11(6) p. 20150086. [DOI] [Web of Science] [Pubmed]

Ren G., Conti E., Salamin N., 2015. Phylogeny and biogeography of Primula sect. Armerina: implications for plant evolution under climate change and the uplift of the Qinghai-Tibet Plateau. BMC Evolutionary Biology 15 p. 161. [Document] [DOI] [Web of Science] [Pubmed]

Serrano-Serrano M.L., Perret M., Guignard M., Chautems A., Silvestro D., Salamin N., 2015. Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical Gesneriaceae. BMC Evolutionary Biology 15 p. 247. [DOI] [Web of Science] [Pubmed]

Silvestro D., Antonelli A., Salamin N., Quental T.B., 2015. The role of clade competition in the diversification of North American canids. Proceedings of the National Academy of Sciences of the United States of America 112(28) pp. 8684-8689. [DOI] [Web of Science] [Pubmed]

Silvestro D., Kostikova A., Litsios G., Pearman P.B., Salamin N., 2015. Measurement Errors Should Always Be Incorporated in Phylogenetic Comparative Analysis. Methods in Ecology and Evolution 6(3) pp. 340-346. [DOI] [Web of Science]

Witsenburg F., Clément L., López-Baucells A., Palmeirim J., Pavlini; I., Scaravelli D., Jík M., Dutoit L., Salamin N., Goudet J. et al., 2015. How a haemosporidian parasite of bats gets around: the genetic structure of a parasite, vector and host compared. Molecular Ecology 24(4) pp. 926-940. [Document] [DOI] [Web of Science] [Pubmed]


Christin P.A., Spriggs E., Osborne C.P., Strömberg C.A., Salamin N., Edwards E.J., 2014. Molecular dating, evolutionary rates, and the age of the grasses. Systematic Biology 63(2) pp. 153-165. [DOI] [Web of Science] [Pubmed]

Dib L., Silvestro D., Salamin N., 2014. Evolutionary footprint of coevolving positions in genes. Bioinformatics 30(9) pp. 1241-1249. [DOI] [Web of Science] [Pubmed]

Kostikova A., Litsios G., Burgy S., Milani L., Pearman P.B., Salamin N., 2014. Scale-dependent adaptive evolution and morphological convergence to climatic niche in Californian eriogonoids (Polygonaceae). Journal of Biogeography 41(7) pp. 1326-1337. [DOI] [Web of Science]

Kostikova A., Salamin N., Pearman P.B., 2014. The role of climatic tolerances and seed traits in reduced extinction rates of temperate Polygonaceae. Evolution 68(7) pp. 1856-1870. [DOI] [Pubmed]

Lexer C., Wüest R.O., Mangili S., Heuertz M., Stölting K.N., Pearman P.B., Forest F., Salamin N., Zimmermann N.E., Bossolini E., 2014. Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence in Restio capensis (Restionaceae). Molecular Ecology 23(17) pp. 4373-4386. [DOI] [Web of Science] [Pubmed]

Litsios G, Pearman P.B., Lanterbecq D., Tolou N., Salamin N., 2014. The radiation of the clownfishes has two geographical replicates. Journal of Biogeography 41(11) pp. 2140-2149. [embargo unspecified] [DOI] [Web of Science]

Litsios G., Kostikova A., Salamin N., 2014. Host specialist clownfishes are environmental niche generalists. Proceedings of the Royal Society. B Biological Sciences 281(1795) pp. 20133220-20133220. [DOI] [Web of Science] [Pubmed]

Litsios G., Salamin N., 2014. Hybridisation and diversification in the adaptive radiation of clownfishes. BMC Evolutionary Biology 14(1) p. 245. [Document] [DOI] [Web of Science] [Pubmed]

Litsios G., Wüest R.O., Kostikova A., Forest F., Lexer C., Linder H.P., Pearman P.B., Zimmermann N.E., Salamin N., 2014. Effects of a fire response trait on diversification in replicated radiations. Evolution 68(2) pp. 453-465. [Document] [DOI] [Web of Science] [Pubmed]

Moretti S., Laurenczy B., Gharib W.H., Castella B., Kuzniar A., Schabauer H., Studer R.A., Valle M., Salamin N., Stockinger H. et al., 2014. Selectome update: quality control and computational improvements to a database of positive selection. Nucleic Acids Research 42(1) pp. D917-D921. [Document] [DOI] [Web of Science] [Pubmed]

Pellissier L., Niculita-Hirzel Hélène, Dubuis A., Pagni M., Guex N., Ndiribe C., Salamin N., Xenarios I., Goudet J., Sanders I.R. et al., 2014. Soil fungal communities of grasslands are environmentally structured at a regional scale in the Alps. Molecular Ecology 23(17) pp. 4274-4290. [DOI] [Web of Science] [Pubmed]

Pio D.V., Engler R., Linder H.P., Monadjem A., Cotterill F.P.D., Taylor P.J., Schoeman M.C., Price B.W., Villet M.H., Eick G. et al., 2014. Climate change effects on animal and plant phylogenetic diversity in southern Africa. Global Change Biology 20(5) pp. 1538-1549. [DOI] [Web of Science]

Silvestro D., Salamin N., Schnitzler J., 2014. PyRate: a new program to estimate speciation and extinction rates from incomplete fossil data. Methods in Ecology and Evolution 5(10) pp. 1126-1131. [DOI] [Web of Science]

Silvestro D., Schnitzler J., Liow L.H., Antonelli A., Salamin N., 2014. Bayesian estimation of speciation and extinction from incomplete fossil occurrence data. Systematic Biology 63(3) pp. 349-367. [DOI] [Web of Science] [Pubmed]

Silvestro Daniele, Zizka Georg, Schulte Katharina, 2014. Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution 68(1) pp. 163-175. [Document] [DOI]

Valle M., Schabauer H., Pacher C., Stockinger H., Stamatakis A., Robinson-Rechavi M., Salamin N., 2014. Optimization strategies for fast detection of positive selection on phylogenetic trees. Bioinformatics 30(8) pp. 1129-1137. [DOI] [Web of Science] [Pubmed]

Zaheri M., Dib L., Salamin N., 2014. A generalized mechanistic codon model. Molecular Biology and Evolution 31(9) pp. 2528-2541. [DOI] [Web of Science] [Pubmed]


Davies T.J., Wolkovich E.M., Kraft N.J.B., Salamin N., Allen J.M., Ault T.R., Betancourt J.L., Bolmgren K., Cleland E.E., Cook B.I. et al., 2013. Phylogenetic conservatism in plant phenology. Journal of Ecology 101(6) pp. 1520-1530. [embargo 01/12/2014] [DOI] [Web of Science]

Kostikova A., Litsios G., Salamin N., Pearman P.B., 2013. Linking life-history traits, ecology, and niche breadth evolution in north american eriogonoids (polygonaceae). American Naturalist 182(6) pp. 760-774. [DOI] [Web of Science] [Pubmed]

Lexer C., Mangili S., Bossolini E., Forest F., Stölting K.N., Pearman P.B., Rimmermann N.E., Salamin N., 2013. 'Next generation' biogeography: towards understanding the drivers of species diversification and persistence. Journal of Biogeography 40(6) pp. 1013-1022. [DOI] [Web of Science]

Mazer S.J., Travers S.E., Cook B.I., Davies T.J., Bolmgren K., Kraft N.J., Salamin N., Inouye D.W., 2013. Flowering date of taxonomic families predicts phenological sensitivity to temperature: Implications for forecasting the effects of climate change on unstudied taxa. American Journal of Botany 100(7) pp. 1381-1397. [embargo 01/12/2014] [DOI] [Web of Science] [Pubmed]

Ndiribe C., Pellissier L., Antonelli S., Dubuis A., Pottier J., Vittoz P., Guisan A., Salamin N., 2013. Phylogenetic plant community structure along elevation is lineage specific. Ecology and Evolution 3(15) pp. 4925-4939. [DOI] [Web of Science]

Ndiribe C., Pellissier L., Dubuis A., Vittoz P., Salamin N., Guisan A., 2013. Plant functional and phylogenetic turnover correlate with climate and land use in the Western Swiss Alps. Journal of Plant Ecology pp. 1-12. [embargo 01/12/2014] [DOI]

Papadopulos A.S., Powell M.P., Pupulin F., Warner J., Hawkins J.A., Salamin N., Chittka L., Williams N.H., Whitten W.M., Loader D. et al., 2013. Convergent evolution of floral signals underlies the success of Neotropical orchids. Proceedings of the Royal Society B Biological Sciences 280(1765) p. 20130960. [DOI] [Web of Science] [Pubmed]

Pellissier L., Ndiribe C., Dubuis A., Pradervand J.N., Salamin N., Guisan A., Rasmann S., 2013. Turnover of plant lineages shapes herbivore phylogenetic beta diversity along ecological gradients. Ecology Letters 16(5) pp. 600-608. [DOI] [Web of Science] [Pubmed]

Pellissier L., Rohr R.P., Ndiribe C., Pradervand J.-N., Salamin N., Guisan A., Wisz M., 2013. Combining food web and species distribution models for improved community projections. Ecology and Evolution 3(13) pp. 4572-4583. [DOI] [Web of Science]

Perret M., Chautems A., De Araujo A.O., Salamin N., 2013, Temporal and spatial origin of Gesneriaceae in the New World inferred from plastid DNA sequences. Botanical Journal of the Linnean Society 171(1) p. 61-79. [DOI]


Christin P.A., Besnard G., Edwards E.J., Salamin N., 2012. Effect of genetic convergence on phylogenetic inference. Molecular Phylogenetics and Evolution 62(3) pp. 921-927. [DOI] [Web of Science] [Pubmed]

Cook B.I., Wolkovich E.M., Davies T.J., Ault T.R., Betancourt J.L., Allen J.M., Bolmgren K., Cleland E.E., Crimmins T.M., Kraft N.J.B. et al., 2012. Sensitivity of Spring Phenology to Warming Across Temporal and Spatial Climate Gradients in Two Independent Databases. Ecosystems 15(8) pp. 1283-1294. [DOI] [Web of Science]

Davies T.J., Kraft N.J., Salamin N., Wolkovich E.M., 2012. Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism. Ecology 93(2) pp. 242-247. [DOI] [Web of Science] [Pubmed]

Grass Phylogeny Working Group II, 2012. New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins. New Phytologist 193(2) pp. 304-312. [DOI] [Web of Science] [Pubmed]

Litsios G., Pellissier L., Forest F., Lexer C., Pearman P.B., Zimmermann N.E., Salamin N., 2012. Trophic specialization influences the rate of environmental niche evolution in damselfishes (Pomacentridae). Proceedings of the Royal Society of London B Biological Sciences 279(1743) pp. 3662-3669. [DOI] [Web of Science] [Pubmed]

Litsios G., Salamin N., 2012. Effects of phylogenetic signal on ancestral state reconstruction. Systematic Biology 61(3) pp. 533-538. [DOI] [Web of Science] [Pubmed]

Litsios G., Sims C.A., Wüest R.O., Pearman P.B., Zimmermann N.E., Salamin N., 2012. Mutualism with sea anemones triggered the adaptive radiation of clownfishes. BMC Evolutionary Biology 12(1) p. 212. [DOI] [Web of Science] [Pubmed]

Moretti S., Murri R., Maffioletti S., Kuzniar A., Castella B, Salamin N., Robinson-Rechavi M., Stockinger H., 2012. gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. pp. 59-68 in Glatard T, Silverstein J (eds.) HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences. Studies in Health Technology and Informatics 175. IOS Press Books online. [Document] [url editor site] [DOI]

Naciri Y., Caetano S., Salamin N., 2012. Plant DNA barcodes and the influence of gene flow. Molecular Ecology Resources 12(4) pp. 575-580. [DOI] [Web of Science] [Pubmed]

Pellissier L., Litsios G., Fiedler K., Pottier J., Dubuis A., Pradervand J.N., Salamin N., Guisan A., 2012. Loss of interactions with ants under cold climate in a regional myrmecophilous butterfly fauna. Journal of Biogeography 39(10) pp. 1782-1790. [DOI] [Web of Science]

Schabauer H., Valle M., Pacher C., Stockinger H., Stamatakis A., Robinson-Rechavi M., Yang Z., Salamin N., 2012. SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model. pp. 700-708 in Aluru S., Bader D.A. (eds.) HiCOMB (11th IEEE International Workshop on High Performance Computational Biology). IEEE. [Document] [DOI]

Witsenburg F., Salamin N., Christe P., 2012. The evolutionary host switches of Polychromophilus: a multi-gene phylogeny of the bat malaria genus suggests a second invasion of mammals by a haemosporidian parasite. Malaria Journal 11(1) p. 53. [Document] [DOI] [Web of Science] [Pubmed]

Wolkovich E.M., Cook B.I., Allen J.M., Crimmins T.M., Betancourt J.L., Travers S.E., Pau S., Regetz J., Davies T.J., Kraft N.J. et al., 2012. Warming experiments underpredict plant phenological responses to climate change. Nature 485(7399) pp. 494-497. [DOI] [Web of Science] [Pubmed]

Yang S.Y., Grønlund M., Jakobsen I., Grotemeyer M.S., Rentsch D., Miyao A., Hirochika H., Kumar C.S., Sundaresan V., Salamin N. et al., 2012. Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family. Plant Cell 24(10) pp. 4236-4251. [DOI] [Web of Science] [Pubmed]


Buerki S., Forest F., Salamin N., Alvarez N., 2011. Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study. Systematic Biology 60(1) pp. 32-44. [DOI] [Web of Science] [Pubmed]

Osborne C.P., Visser V., Freckleton R.P., Simpson D., Clayton D., Barker A., Chapman S., Salamin N., Uren V., GrassPortal Dev Team, 2011. GrassPortal: an online ecological and evolutionary data facility for the grasses. pp. 566-566 in Van Staden J. (eds.) South African Journal of Botany. South African Journal of Botany 77(2). Elsevier. [DOI] [Web of Science]

Pio D.V., Broennimann O., Barraclough T.G., Reeves G., Rebelo A.G., Thuiller W., Guisan A., Salamin N., 2011. Spatial predictions of phylogenetic diversity in conservation decision making. Conservation Biology 25(6) pp. 1229-1239. [DOI] [Web of Science] [Pubmed]


Burri R., Salamin N., Studer R.A., Roulin A., Fumagalli L., 2010. Adaptive divergence of ancient gene duplicates in the avian MHC class II beta. Molecular Biology and Evolution 27(10) pp. 2360-2374. [DOI] [Web of Science] [Pubmed]

Edwards E.J., Osborne C.P., Strömberg C.A., Smith S.A., C4 Grasses Consortium, Bond W.J., Bond W.J., Christin P.A., Cousins A.B., Duvall M.R. et al., 2010. The origins of C4 grasslands: integrating evolutionary and ecosystem science. Science 328(5978) pp. 587-591. [DOI] [Web of Science] [Pubmed]

Hodkinson T. R., Chonghaile G. N., Sungkaew S., Chase M. W., Salamin N., Stapleton C. M. A., 2010. Phylogenetic analysis of plastid and nuclear DNA sequences reveals a rapid late Miocene radiation of the temperate bamboo tribe Arundinarieae (Poaceae, Bambusoideae). Plant Ecology and Diversity 3(2) pp. 109-120. [DOI] [Web of Science]

Roulin A., Salamin N., 2010. Insularity and the evolution of melanism, sexual dichromatism and body size in the worldwide-distributed barn owl. Journal of Evolutionary Biology 23(5) pp. 925-934. [Document] [DOI] [Pubmed]

Salamin N., Wüest R.O., Lavergne S., Thuiller W., Pearman P.B., 2010. Assessing rapid evolution in a changing environment. Trends in Ecology and Evolution 25(12) pp. 692-698. [DOI] [Web of Science] [Pubmed]


Besnard G., Muasya A.M., Russier F., Roalson E.H., Salamin N., Christin P.A., 2009. Phylogenomics of C(4) photosynthesis in sedges (Cyperaceae): multiple appearances and genetic convergence. Molecular biology and evolution 26(8) pp. 1909-1919. [DOI] [Web of Science] [Pubmed]

Christin P.A., Petitpierre B., Salamin N., Büchi L., Besnard G., 2009. Evolution of C(4) phosphoenolpyruvate carboxykinase in grasses, from genotype to phenotype. Molecular Biology and Evolution 26(2) pp. 357-365. [DOI] [Web of Science] [Pubmed]

Christin P.A., Salamin N., Kellogg E.A., Vicentini A., Besnard G., 2009. Integrating phylogeny into studies of C4 variation in the grasses. Plant Physiology 149(1) pp. 82-87. [Document] [DOI] [Web of Science] [Pubmed]

Christin P.A., Samaritani E., Petitpierre B., Salamin N., Besnard G., 2009. Evolutionary insights on C4 photosynthetic subtypes in grasses from genomics and phylogenetics. Genome Biology and Evolution 2009 pp. 221-230. [Document] [url editor site] [DOI] [Web of Science]

Roulin A., Wink M., Salamin N., 2009. Selection on a eumelanic ornament is stronger in the tropics than in temperate zones in the worldwide-distributed barn owl. Journal of Evolutionary Biology 22(2) pp. 345-354. [DOI] [Web of Science] [Pubmed]

Sungkaew S., Stapleton C.M., Salamin N., Hodkinson T.R., 2009. Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s. Journal of Plant Research 122(1) pp. 95-108. [DOI] [Web of Science] [Pubmed]


Bouchenak-Khelladi Y., Salamin N., Savolainen V., Forest F., Bank M., Chase M.W., Hodkinson T.R., 2008. Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling. Molecular Phylogenetics and Evolution 47(2) pp. 488-505. [DOI] [Web of Science] [Pubmed]

Burri R., Hirzel H.N., Salamin N., Roulin A., Fumagalli L., 2008. Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution. Molecular Biology and Evolution 25(6) pp. 1180-1191. [DOI] [Web of Science] [Pubmed]

Christin P.A., Besnard G., Samaritani E., Duvall M.R., Hodkinson T.R., Savolainen V., Salamin N., 2008. Oligocene CO2 decline promoted C4 photosynthesis in grasses. Current Biology 18(1) pp. 37-43. [DOI] [Web of Science] [Pubmed]

Christin P.A., Salamin N., Muasya A.M., Roalson E.H., Russier F., Besnard G., 2008. Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis. Molecular Biology and Evolution 25(11) pp. 2361-2368. [DOI] [Web of Science] [Pubmed]

Dubey S., Salamin N., Ruedi M., Barrière P., Colyn M., Vogel P., 2008. Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 48(3) pp. 953-963. [Document] [DOI] [Web of Science] [Pubmed]


Christin P.A., Salamin N., Savolainen V., Besnard G., 2007. A phylogenetic study of the phosphoenolpyruvate carboxylase multigene family in Poaceae: understanding the molecular changes linked to C4 photosynthesis evolution. Kew Bulletin 62(3) pp. 455-462. [DOI]

Christin P.A., Salamin N., Savolainen V., Duvall M.R., Besnard G., 2007. C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes. Current Biology 17(14) pp. 1241-1247. [DOI] [Web of Science] [Pubmed]

Dubey S., Salamin N., Ohdachi S.D., Barrière P., Vogel P., 2007. Molecular phylogenetics of shrews (Mammalia: Soricidae) reveal timing of transcontinental colonizations. Molecular Phylogenetics and Evolution 44(1) pp. 126-137. [Document] [DOI] [Pubmed]

Hodkinson T.R., Savolainen V., Jacobs S.W.L., Bouchenak-Khelladi Y., Kinney M.S., Salamin N., 2007. Supersizing: progress in documenting and understanding grass species richness. pp. 275-298 in Hodkinson T.R., Parnell J.A.N. (eds.) Reconstructing the tree of life: taxonomy and systematics of species rich taxa. The Systematics Association special volume series 72. CRC Press, Boca Raton. [DOI]

Hodkinson T.R., Waldren S., Parnell J.A., Kelleher C.T., Salamin K., Salamin N., 2007. DNA banking for plant breeding, biotechnology and biodiversity evaluation. Journal of Plant Research 120(1) pp. 17-29. [DOI] [Web of Science] [Pubmed]


Basic N., Salamin N., Keller C., Galland N., Besnard G., 2006. Cadmium hyperaccumulation and genetic differentiation of Thlaspi caerulescens populations. Biochemical Systematics and Ecology 34(9) pp. 667-677. [DOI] [Web of Science]

Donnelly A., Salamin N., Jones M. B., 2006. Changes in tree phenology: an indicator of spring warming in Ireland? Biology and Environment: Proceedings of the Irish Royal Academy 106(1) pp. 49-56. [DOI]

Flannery M.L., Mitchell F.J., Coyne S., Kavanagh T.A., Burke J.I., Salamin N., Dowding P., Hodkinson T.R., 2006. Plastid genome characterisation in Brassica and Brassicaceae using a new set of nine SSRs. Theoretical and Applied Genetics 113(7) pp. 1221-1231. [DOI] [Web of Science] [Pubmed]

McGrath S., Hodkinson T.R., Salamin N., Barth S., 2006. Development and testing of novel chloroplast microsatellite markers for Lolium perenne and other grasses (Poaceae) from de novo sequencing and in silico sequences. Molecular Ecology Notes 6(2) pp. 449-452. [DOI] [Web of Science]

Savolainen V., Anstett M.C., Lexer C., Hutton I., Clarkson J.J., Norup M.V., Powell M.P., Springate D., Salamin N., Baker W.J., 2006. Sympatric speciation in palms on an oceanic island. Nature 441(7090) pp. 210-213. [DOI] [Web of Science] [Pubmed]

Savolainen V., Lexer C., Anstett M. C., Hutton I., Clarkson J. J., Norup M. V., Powell M. P., Springate D., Salamin N., Baker W. J., 10-2006. Evolutionary biology - Sympatric plant speciation in islands? Reply. Nature 443(7114) pp. E12-13. [DOI] [Web of Science]

Strauss S.Y., Webb C.O., Salamin N., 2006. Exotic taxa less related to native species are more invasive. Proceedings of the National Academy of Sciences of the United States of America 103(15) pp. 5841-5845. [DOI] [Web of Science] [Pubmed]


Chase M.W., Salamin N., Wilkinson M., Dunwell J.M., Kesanakurthi R.P., Haidar N., Savolainen V., 2005. Land plants and DNA barcodes: short-term and long-term goals. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360(1462) pp. 1889-1895. [DOI] [Web of Science] [Pubmed]

Rønsted N., Weiblen G.D., Cook J.M., Salamin N., Machado C.A., Savolainen V., 2005. 60 million years of co-divergence in the fig-wasp symbiosis. Proceedings of the Royal Society of London B Biological Sciences 272(1581) pp. 2593-2599. [DOI] [Web of Science] [Pubmed]

Salamin N., Hodkinson T.R., Savolainen Coates V., 2005. Towards building the tree of life: a simulation study for all angiosperm genera. Systematic Biology 54(2) pp. 183-196. [DOI] [Web of Science] [Pubmed]


Salamin N., Davies T. J., 2004. Using supertrees to investigate species richness in grasses and flowering plants. pp. 461-486 in Bininda-Emonds O.R.P. (eds.) Phylogenetic supertrees. Computational Biology 4. Kluwer Academic Publishers, Dordrecht. [Document]


Salamin N., Chase M.W., Hodkinson T.R., Savolainen V., 2003. Assessing internal support with large phylogenetic DNA matrices. Molecular Phylogenetics and Evolution 27(3) pp. 528-539. [DOI] [Web of Science] [Pubmed]


Hodkinson T.R., Chase M.W., Lledó M.D., Salamin N., Renvoize S.A., 2002. Phylogenetics of Miscanthus, Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnLintron and trnL-F intergenic spacers. Journal of Plant Research 115(5) pp. 381-392. [DOI] [Web of Science] [Pubmed]

Salamin N., Hodkinson T.R., Savolainen V., 2002. Building supertrees: an empirical assessment using the grass family (Poaceae). Systematic Biology 51(1) pp. 136-150. [DOI] [Web of Science] [Pubmed]

Savolainen V., Chase M.W., Salamin N., Soltis D.E., Soltis P.S., López A.J., Fédrigo O., Naylor G.J., 2002. Phylogeny reconstruction and functional constraints in organellar genomes: plastid atpB and rbcL sequences versus animal mitochondrion. Systematic Biology 51(4) pp. 638-647. [DOI] [Web of Science] [Pubmed]
Written on Sunday October 6, 2013