ExpressionView

From Computational Biology Group

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(Launch and download)
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ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.
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ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.
  
 
= Launch and download =
 
= Launch and download =
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== Download the R package (includes the Flash applet)==
 
== Download the R package (includes the Flash applet)==
  
== Download the standalone viewer (adobe AIR) ==
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== Download the stand-alone viewer (adobe AIR) ==
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If you prefer a stand-alone viewer, you can download and install the Adobe AIR build of ExpressionView:
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[http://maya:7575/ExpressionView/air/ExpressionView.air ExpressionView.air]. Note that you first need to install the necessary runtime environment from [http://get.adobe.com/air].
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== Download some sample data ==
 
== Download some sample data ==
 
* [[Media:Expressionview.sampledata.all.small.xml|Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 8 modules]]
 
* [[Media:Expressionview.sampledata.all.small.xml|Gene expression profile of adult T-cell acute lymphocytic leukemia (ALL) with 8 modules]]

Revision as of 23:42, 17 November 2009

Screenshot of the ExpressionView applet



ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.

Contents

Launch and download

Launch the ExpressionView Flash applet

Download the R package (includes the Flash applet)

Download the stand-alone viewer (adobe AIR)

If you prefer a stand-alone viewer, you can download and install the Adobe AIR build of ExpressionView: ExpressionView.air. Note that you first need to install the necessary runtime environment from [1].

Download some sample data

Screenshots

Tutorials

There are several tutorials describing how to use ExpressionView:

R package

Flash applet

Additional documentation and downloads