Under-expression is coded with green,
over-expression with red color.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
all
This term is the most general term possible
plasma membrane
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
membrane
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
plasma membrane part
Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
synapse
The junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell; the site of interneuronal communication. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
all
This term is the most general term possible
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
plasma membrane part
Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
ABCA8ATP-binding cassette, sub-family A (ABC1), member 8 (204719_at), score: 0.84 ADCY2adenylate cyclase 2 (brain) (217687_at), score: -0.61 AGBL2ATP/GTP binding protein-like 2 (220390_at), score: -0.62 B9D1B9 protein domain 1 (210534_s_at), score: 0.62 BDKRB2bradykinin receptor B2 (205870_at), score: 0.66 BIRC3baculoviral IAP repeat-containing 3 (210538_s_at), score: 0.69 C19orf40chromosome 19 open reading frame 40 (214816_x_at), score: -0.62 C2orf54chromosome 2 open reading frame 54 (220149_at), score: -0.62 C8orf4chromosome 8 open reading frame 4 (218541_s_at), score: 0.59 CACNA1Ccalcium channel, voltage-dependent, L type, alpha 1C subunit (211592_s_at), score: -0.59 CFIcomplement factor I (203854_at), score: 0.71 CLCN2chloride channel 2 (213499_at), score: -0.6 DCLK1doublecortin-like kinase 1 (205399_at), score: 0.66 EDNRBendothelin receptor type B (204271_s_at), score: 0.74 EFHC2EF-hand domain (C-terminal) containing 2 (220591_s_at), score: 0.73 EGR3early growth response 3 (206115_at), score: 0.75 GABRR1gamma-aminobutyric acid (GABA) receptor, rho 1 (206525_at), score: 0.6 GALNT12UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) (218885_s_at), score: 0.62 GATMglycine amidinotransferase (L-arginine:glycine amidinotransferase) (203178_at), score: 0.6 GPATCH4G patch domain containing 4 (220596_at), score: -0.62 GPR56G protein-coupled receptor 56 (212070_at), score: 0.72 HGFhepatocyte growth factor (hepapoietin A; scatter factor) (209960_at), score: 0.92 HIST1H2AGhistone cluster 1, H2ag (207156_at), score: 0.62 INAinternexin neuronal intermediate filament protein, alpha (204465_s_at), score: 0.61 IRF1interferon regulatory factor 1 (202531_at), score: 0.65 KCTD15potassium channel tetramerisation domain containing 15 (218553_s_at), score: -0.59 KIAA1009KIAA1009 (206005_s_at), score: -0.6 LOC100132214similar to HSPC047 protein (220692_at), score: -0.65 LOC100133105hypothetical protein LOC100133105 (214237_x_at), score: -0.79 LOC202181hypothetical protein LOC202181 (220609_at), score: -0.67 LRP2low density lipoprotein-related protein 2 (205710_at), score: 0.61 LRP8low density lipoprotein receptor-related protein 8, apolipoprotein e receptor (205282_at), score: -0.59 MAP7microtubule-associated protein 7 (202890_at), score: 0.72 MAST4microtubule associated serine/threonine kinase family member 4 (40016_g_at), score: 0.6 NDPNorrie disease (pseudoglioma) (206022_at), score: 0.61 NOL10nucleolar protein 10 (218591_s_at), score: -0.78 NR4A1nuclear receptor subfamily 4, group A, member 1 (202340_x_at), score: 0.77 OAS22'-5'-oligoadenylate synthetase 2, 69/71kDa (204972_at), score: 0.84 OVOL2ovo-like 2 (Drosophila) (211778_s_at), score: -0.62 PARD6Apar-6 partitioning defective 6 homolog alpha (C. elegans) (205245_at), score: -0.61 PHC3polyhomeotic homolog 3 (Drosophila) (215521_at), score: 0.71 PIGLphosphatidylinositol glycan anchor biosynthesis, class L (213889_at), score: 0.6 PKNOX1PBX/knotted 1 homeobox 1 (221883_at), score: -0.65 PROX1prospero homeobox 1 (207401_at), score: 0.71 RARRES1retinoic acid receptor responder (tazarotene induced) 1 (221872_at), score: 0.75 RASGRP2RAS guanyl releasing protein 2 (calcium and DAG-regulated) (214369_s_at), score: -0.64 RASSF2Ras association (RalGDS/AF-6) domain family member 2 (203185_at), score: 0.76 RCAN2regulator of calcineurin 2 (203498_at), score: 0.63 SECTM1secreted and transmembrane 1 (213716_s_at), score: 1 SELENBP1selenium binding protein 1 (214433_s_at), score: 0.7 SETD1ASET domain containing 1A (213202_at), score: -0.65 SIGLEC15sialic acid binding Ig-like lectin 15 (215856_at), score: 0.69 SLC15A1solute carrier family 15 (oligopeptide transporter), member 1 (211349_at), score: -0.7 SNAI1snail homolog 1 (Drosophila) (219480_at), score: 0.77 SNAP25synaptosomal-associated protein, 25kDa (202508_s_at), score: 0.93 SYN2synapsin II (210247_at), score: -0.62 SYT1synaptotagmin I (203999_at), score: 0.8 THSD7Athrombospondin, type I, domain containing 7A (214920_at), score: 0.74 TLR3toll-like receptor 3 (206271_at), score: 0.65 TMEM35transmembrane protein 35 (219685_at), score: 0.66 TP63tumor protein p63 (209863_s_at), score: -0.61 TRA@T cell receptor alpha locus (216540_at), score: -0.67 TRIM52tripartite motif-containing 52 (221897_at), score: 0.7 ULBP2UL16 binding protein 2 (221291_at), score: -0.64 YPEL1yippee-like 1 (Drosophila) (206063_x_at), score: -0.59 ZAKsterile alpha motif and leucine zipper containing kinase AZK (218833_at), score: -0.65
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-TABM-263-raw-cel-1515486431.cel | 40 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486311.cel | 34 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515485791.cel | 8 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
