Previous module | Next module Module #776, TG: 2.6, TC: 1.8, 139 probes, 139 Entrez genes, 6 conditions

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Expression data for module #776

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Under-expression is coded with green, over-expression with red color.

Help | Hide | Top The GO tree — Biological processes

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Help | Hide | Top The GO tree — Cellular Components

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extracellular region

The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

cellular_component

The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

proteinaceous extracellular matrix

A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity.

extracellular matrix

A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants).

extracellular region part

Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.

all

This term is the most general term possible

extracellular region part

Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.

Help | Hide | Top The GO tree — Molecular Function

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Help | Show | Top GO BP test for over-representation

Help | Show | Top GO CC test for over-representation

Help | Show | Top GO MF test for over-representation

Help | Hide | Top KEGG Pathway test for over-representation

Id Pvalue ExpCount Count Size Term
00040 4.795e-02 0.2031 3
 13 Pentose and glucuronate interconversions

Help | Hide | Top miRNA test for over-representation

Id Pvalue ExpCount Count Size
miR-23ab 1.474e-02 9.242 25
 551

Help | Hide | Top Chromosome test for over-representation

No enriched terms

Help | Hide | Top Genes

Entrez genes

A2Malpha-2-macroglobulin (217757_at), score: -0.62 ABCB1ATP-binding cassette, sub-family B (MDR/TAP), member 1 (209993_at), score: -1 ABHD14Aabhydrolase domain containing 14A (210006_at), score: 0.6 AIM2absent in melanoma 2 (206513_at), score: -0.66 ANK3ankyrin 3, node of Ranvier (ankyrin G) (206385_s_at), score: -0.56 ATP6V1B2ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 (201089_at), score: -0.55 BAALCbrain and acute leukemia, cytoplasmic (218899_s_at), score: 0.51 BACE1beta-site APP-cleaving enzyme 1 (217904_s_at), score: 0.47 BAZ2Abromodomain adjacent to zinc finger domain, 2A (201353_s_at), score: -0.58 C10orf116chromosome 10 open reading frame 116 (203571_s_at), score: 0.48 C3orf64chromosome 3 open reading frame 64 (221935_s_at), score: 0.52 C4orf31chromosome 4 open reading frame 31 (219747_at), score: 0.67 C5orf30chromosome 5 open reading frame 30 (221823_at), score: 0.6 CARD10caspase recruitment domain family, member 10 (210026_s_at), score: -0.56 CD248CD248 molecule, endosialin (219025_at), score: 0.46 CDKN1Acyclin-dependent kinase inhibitor 1A (p21, Cip1) (202284_s_at), score: 0.45 CDR2Lcerebellar degeneration-related protein 2-like (213230_at), score: 0.52 CGBchorionic gonadotropin, beta polypeptide (205387_s_at), score: 0.46 COL11A1collagen, type XI, alpha 1 (37892_at), score: 0.56 COL8A2collagen, type VIII, alpha 2 (221900_at), score: 0.45 COMPcartilage oligomeric matrix protein (205713_s_at), score: 0.54 COPZ2coatomer protein complex, subunit zeta 2 (219561_at), score: 0.48 CRTAPcartilage associated protein (201380_at), score: 0.56 CRYABcrystallin, alpha B (209283_at), score: 0.54 CTSKcathepsin K (202450_s_at), score: 0.47 DDX17DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (208151_x_at), score: -0.69 DIO2deiodinase, iodothyronine, type II (203700_s_at), score: -0.61 DUSP14dual specificity phosphatase 14 (203367_at), score: 0.5 ECM1extracellular matrix protein 1 (209365_s_at), score: 0.51 EPHB2EPH receptor B2 (209589_s_at), score: -0.62 FAM108A1family with sequence similarity 108, member A1 (221267_s_at), score: 0.48 FAM169Afamily with sequence similarity 169, member A (213954_at), score: -0.61 FASFas (TNF receptor superfamily, member 6) (204780_s_at), score: 0.54 FAT1FAT tumor suppressor homolog 1 (Drosophila) (201579_at), score: 0.57 FKBP4FK506 binding protein 4, 59kDa (200894_s_at), score: -0.6 FKBP9FK506 binding protein 9, 63 kDa (212169_at), score: 0.64 FOLR3folate receptor 3 (gamma) (206371_at), score: 0.47 FOXD1forkhead box D1 (206307_s_at), score: 0.46 GABBR2gamma-aminobutyric acid (GABA) B receptor, 2 (209990_s_at), score: 0.5 GAGE4G antigen 4 (207086_x_at), score: -0.9 GAGE6G antigen 6 (208155_x_at), score: -0.89 GALNT6UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) (219956_at), score: 0.47 GAS6growth arrest-specific 6 (202177_at), score: 0.62 GATA3GATA binding protein 3 (209604_s_at), score: -0.78 GLSglutaminase (203159_at), score: 0.56 HAS2hyaluronan synthase 2 (206432_at), score: 0.52 HERC5hect domain and RLD 5 (219863_at), score: -0.73 HGSNATheparan-alpha-glucosaminide N-acetyltransferase (218017_s_at), score: 0.54 HIST2H2AA3histone cluster 2, H2aa3 (214290_s_at), score: 0.52 HIVEP2human immunodeficiency virus type I enhancer binding protein 2 (212642_s_at), score: 0.5 HRASLSHRAS-like suppressor (219983_at), score: -0.57 HSPA4Lheat shock 70kDa protein 4-like (205543_at), score: -0.56 HSPB2heat shock 27kDa protein 2 (205824_at), score: 0.46 HSPB7heat shock 27kDa protein family, member 7 (cardiovascular) (218934_s_at), score: 0.61 IGFBP3insulin-like growth factor binding protein 3 (212143_s_at), score: 0.52 IL11RAinterleukin 11 receptor, alpha (204773_at), score: 0.51 IRS2insulin receptor substrate 2 (209185_s_at), score: 0.67 IRX5iroquois homeobox 5 (210239_at), score: 0.54 ISLRimmunoglobulin superfamily containing leucine-rich repeat (207191_s_at), score: 0.5 KIAA0495KIAA0495 (213340_s_at), score: 0.48 L1CAML1 cell adhesion molecule (204584_at), score: -0.56 LAPTM5lysosomal multispanning membrane protein 5 (201721_s_at), score: 0.47 LBHlimb bud and heart development homolog (mouse) (221011_s_at), score: 0.51 LDOC1leucine zipper, down-regulated in cancer 1 (204454_at), score: 0.52 LEF1lymphoid enhancer-binding factor 1 (221558_s_at), score: -0.56 LOC388796hypothetical LOC388796 (65588_at), score: -0.55 LOC728855hypothetical LOC728855 (222001_x_at), score: -0.67 LRRC15leucine rich repeat containing 15 (213909_at), score: 0.47 LTBP2latent transforming growth factor beta binding protein 2 (204682_at), score: 0.54 M6PRmannose-6-phosphate receptor (cation dependent) (200900_s_at), score: -0.55 MAN2A1mannosidase, alpha, class 2A, member 1 (205105_at), score: 0.5 MARK1MAP/microtubule affinity-regulating kinase 1 (221047_s_at), score: -0.79 MFAP5microfibrillar associated protein 5 (213764_s_at), score: 0.58 MITFmicrophthalmia-associated transcription factor (207233_s_at), score: -0.69 MRC2mannose receptor, C type 2 (37408_at), score: 0.45 MSCmusculin (activated B-cell factor-1) (209928_s_at), score: -0.57 MT1P3metallothionein 1 pseudogene 3 (221953_s_at), score: 0.46 MXRA5matrix-remodelling associated 5 (209596_at), score: 0.47 MXRA8matrix-remodelling associated 8 (213422_s_at), score: 0.48 MYO1Cmyosin IC (214656_x_at), score: 0.58 NDNnecdin homolog (mouse) (209550_at), score: 0.45 NDST1N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 (202607_at), score: 0.48 NEFLneurofilament, light polypeptide (221805_at), score: -0.73 NFASCneurofascin homolog (chicken) (213438_at), score: 0.47 NMUneuromedin U (206023_at), score: -0.61 NRGNneurogranin (protein kinase C substrate, RC3) (204081_at), score: -0.65 NTF3neurotrophin 3 (206706_at), score: 0.46 OASL2'-5'-oligoadenylate synthetase-like (210797_s_at), score: -0.92 PBX1pre-B-cell leukemia homeobox 1 (212148_at), score: 0.54 PCLOpiccolo (presynaptic cytomatrix protein) (213558_at), score: -0.56 PDE10Aphosphodiesterase 10A (205501_at), score: -0.68 PDGFCplatelet derived growth factor C (218718_at), score: 0.49 PILRBpaired immunoglobin-like type 2 receptor beta (220954_s_at), score: -0.61 PNMA2paraneoplastic antigen MA2 (209598_at), score: -0.61 PODXLpodocalyxin-like (201578_at), score: 0.58 PPP1R3Cprotein phosphatase 1, regulatory (inhibitor) subunit 3C (204284_at), score: 0.46 PRKCHprotein kinase C, eta (218764_at), score: -0.56 PSG2pregnancy specific beta-1-glycoprotein 2 (208134_x_at), score: 0.48 PSMB4proteasome (prosome, macropain) subunit, beta type, 4 (202243_s_at), score: 0.56 PTGER3prostaglandin E receptor 3 (subtype EP3) (213933_at), score: 0.53 PTPRBprotein tyrosine phosphatase, receptor type, B (205846_at), score: 0.49 QPCTglutaminyl-peptide cyclotransferase (205174_s_at), score: 0.51 RAB40BRAB40B, member RAS oncogene family (204547_at), score: 0.58 RABGAP1LRAB GTPase activating protein 1-like (213982_s_at), score: 0.49 RAD23BRAD23 homolog B (S. cerevisiae) (201223_s_at), score: 0.54 REEP1receptor accessory protein 1 (204364_s_at), score: -0.56 RGNregucalcin (senescence marker protein-30) (210751_s_at), score: 0.45 RP6-213H19.1serine/threonine protein kinase MST4 (218499_at), score: -0.62 SAMD4Asterile alpha motif domain containing 4A (212845_at), score: 0.47 SCG5secretogranin V (7B2 protein) (203889_at), score: 0.51 SERPINB7serpin peptidase inhibitor, clade B (ovalbumin), member 7 (206421_s_at), score: 0.48 SERPINE2serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 (212190_at), score: 0.45 SGCDsarcoglycan, delta (35kDa dystrophin-associated glycoprotein) (213543_at), score: 0.53 SLC4A4solute carrier family 4, sodium bicarbonate cotransporter, member 4 (203908_at), score: 0.54 SLC7A11solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 (217678_at), score: -0.61 SMEK1SMEK homolog 1, suppressor of mek1 (Dictyostelium) (220368_s_at), score: -0.56 SMPD1sphingomyelin phosphodiesterase 1, acid lysosomal (209420_s_at), score: 0.48 SNCAsynuclein, alpha (non A4 component of amyloid precursor) (204466_s_at), score: -0.67 SPARCsecreted protein, acidic, cysteine-rich (osteonectin) (212667_at), score: 0.48 SYTL2synaptotagmin-like 2 (220613_s_at), score: -0.65 TBC1D8TBC1 domain family, member 8 (with GRAM domain) (204526_s_at), score: -0.59 TCEAL2transcription elongation factor A (SII)-like 2 (211276_at), score: -0.83 TERF1telomeric repeat binding factor (NIMA-interacting) 1 (203448_s_at), score: -0.59 TIMP2TIMP metallopeptidase inhibitor 2 (203167_at), score: 0.68 TMEM204transmembrane protein 204 (219315_s_at), score: 0.48 TMEM47transmembrane protein 47 (209656_s_at), score: 0.56 TMOD1tropomodulin 1 (203661_s_at), score: -0.65 TOB1transducer of ERBB2, 1 (202704_at), score: 0.49 TSPAN13tetraspanin 13 (217979_at), score: 0.63 TXNRD1thioredoxin reductase 1 (201266_at), score: -0.56 UAP1UDP-N-acteylglucosamine pyrophosphorylase 1 (209340_at), score: 0.57 UBL3ubiquitin-like 3 (201535_at), score: 0.64 UGT1A1UDP glucuronosyltransferase 1 family, polypeptide A1 (207126_x_at), score: -0.88 UGT1A6UDP glucuronosyltransferase 1 family, polypeptide A6 (206094_x_at), score: -0.88 UGT1A9UDP glucuronosyltransferase 1 family, polypeptide A9 (204532_x_at), score: -0.89 USP18ubiquitin specific peptidase 18 (219211_at), score: -0.58 VWA5Avon Willebrand factor A domain containing 5A (210102_at), score: -0.6 WNT5Bwingless-type MMTV integration site family, member 5B (221029_s_at), score: 0.52 WT1Wilms tumor 1 (206067_s_at), score: -0.64

Non-Entrez genes

Unknown, score:

Help | Hide | Top Conditions

Id sample Experiment ExpName Array Syndrome Cell.line
E-GEOD-3407-raw-cel-1437949750.cel 6 4 Cockayne hgu133a CS CSB
E-GEOD-3407-raw-cel-1437949721.cel 5 4 Cockayne hgu133a CS CSB
E-GEOD-3407-raw-cel-1437949579.cel 2 4 Cockayne hgu133a none CSB
E-GEOD-3407-raw-cel-1437949938.cel 8 4 Cockayne hgu133a none CSB
E-GEOD-3860-raw-cel-1561690360.cel 12 5 HGPS hgu133a none GM0316B
E-GEOD-3860-raw-cel-1561690416.cel 15 5 HGPS hgu133a none GM0316B

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