Under-expression is coded with green,
over-expression with red color.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
all
This term is the most general term possible
plasma membrane
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
membrane
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
integral to membrane
Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.
extracellular region
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
integral to plasma membrane
Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
intrinsic to membrane
Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.
intrinsic to plasma membrane
Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
plasma membrane part
Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
all
This term is the most general term possible
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
plasma membrane part
Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
intrinsic to plasma membrane
Located in the plasma membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.
integral to plasma membrane
Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.
molecular_function
Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
signal transducer activity
Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell.
receptor activity
Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
transmembrane receptor activity
Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle.
molecular transducer activity
The molecular function that accepts an input of one form and creates an output of a different form.
all
This term is the most general term possible
ABCA7ATP-binding cassette, sub-family A (ABC1), member 7 (219577_s_at), score: 0.61 ABCA8ATP-binding cassette, sub-family A (ABC1), member 8 (204719_at), score: -0.69 ABCC9ATP-binding cassette, sub-family C (CFTR/MRP), member 9 (208561_at), score: -0.66 ACAD10acyl-Coenzyme A dehydrogenase family, member 10 (219986_s_at), score: 0.62 ACTR8ARP8 actin-related protein 8 homolog (yeast) (218658_s_at), score: 0.64 ADAM15ADAM metallopeptidase domain 15 (217007_s_at), score: -0.54 ADORA1adenosine A1 receptor (216220_s_at), score: 0.63 AGTangiotensinogen (serpin peptidase inhibitor, clade A, member 8) (202834_at), score: 0.72 AKIRIN2akirin 2 (213810_s_at), score: 0.59 ALDH1B1aldehyde dehydrogenase 1 family, member B1 (209646_x_at), score: 0.54 ALDH4A1aldehyde dehydrogenase 4 family, member A1 (211552_s_at), score: 0.7 ALPPL2alkaline phosphatase, placental-like 2 (216377_x_at), score: 0.56 ANGPT1angiopoietin 1 (205608_s_at), score: 0.59 ASPHD1aspartate beta-hydroxylase domain containing 1 (214993_at), score: 0.71 ATF7IP2activating transcription factor 7 interacting protein 2 (219870_at), score: 0.53 ATG2BATG2 autophagy related 2 homolog B (S. cerevisiae) (219164_s_at), score: 0.53 ATP6V1G2ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 (214762_at), score: 0.62 B3GALT4UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 (210205_at), score: 0.58 BAIAP3BAI1-associated protein 3 (216356_x_at), score: 0.56 C1orf69chromosome 1 open reading frame 69 (215490_at), score: 0.74 C21orf91chromosome 21 open reading frame 91 (220941_s_at), score: 0.52 C2orf68chromosome 2 open reading frame 68 (221878_at), score: 0.55 C4Acomplement component 4A (Rodgers blood group) (214428_x_at), score: 0.56 C8orf84chromosome 8 open reading frame 84 (214725_at), score: -0.97 C9orf33chromosome 9 open reading frame 33 (217130_at), score: 0.54 CADM4cell adhesion molecule 4 (222293_at), score: 0.54 CALB1calbindin 1, 28kDa (205626_s_at), score: 0.8 CALB2calbindin 2 (205428_s_at), score: 0.55 CAMK1Gcalcium/calmodulin-dependent protein kinase IG (217128_s_at), score: 0.67 CAPN9calpain 9 (210641_at), score: 0.6 CATSPER2cation channel, sperm associated 2 (217588_at), score: 0.59 CD79BCD79b molecule, immunoglobulin-associated beta (205297_s_at), score: 0.83 CD9CD9 molecule (201005_at), score: -0.52 CDC42EP4CDC42 effector protein (Rho GTPase binding) 4 (218062_x_at), score: -0.53 CHRDL1chordin-like 1 (209763_at), score: -0.68 CHST10carbohydrate sulfotransferase 10 (204065_at), score: 0.52 CIB2calcium and integrin binding family member 2 (205008_s_at), score: 0.54 COL11A2collagen, type XI, alpha 2 (216993_s_at), score: 0.56 COL9A2collagen, type IX, alpha 2 (213622_at), score: 0.69 CROCCciliary rootlet coiled-coil, rootletin (206274_s_at), score: -0.9 CTRLchymotrypsin-like (214377_s_at), score: 0.54 CYBBcytochrome b-245, beta polypeptide (217431_x_at), score: -0.54 DBC1deleted in bladder cancer 1 (205818_at), score: 0.7 DKFZP586I1420hypothetical protein DKFZp586I1420 (213546_at), score: 0.56 DUSP9dual specificity phosphatase 9 (205777_at), score: 0.83 EFHC2EF-hand domain (C-terminal) containing 2 (220591_s_at), score: -0.66 ELTD1EGF, latrophilin and seven transmembrane domain containing 1 (219134_at), score: 0.52 ENO3enolase 3 (beta, muscle) (204483_at), score: 0.53 ENPEPglutamyl aminopeptidase (aminopeptidase A) (204844_at), score: 0.6 EPB41L5erythrocyte membrane protein band 4.1 like 5 (220977_x_at), score: 0.67 EPHA4EPH receptor A4 (206114_at), score: 0.58 EPHB3EPH receptor B3 (1438_at), score: 0.56 EPM2Aepilepsy, progressive myoclonus type 2A, Lafora disease (laforin) (205231_s_at), score: 0.58 EPOerythropoietin (217254_s_at), score: 0.6 ERCC6excision repair cross-complementing rodent repair deficiency, complementation group 6 (207347_at), score: -0.7 ERGv-ets erythroblastosis virus E26 oncogene homolog (avian) (213541_s_at), score: -0.57 ETV7ets variant 7 (221680_s_at), score: 1 EVI2Becotropic viral integration site 2B (211742_s_at), score: -0.74 EVLEnah/Vasp-like (217838_s_at), score: -0.56 F11coagulation factor XI (206610_s_at), score: 0.59 FBP1fructose-1,6-bisphosphatase 1 (209696_at), score: 0.95 FETUBfetuin B (214417_s_at), score: 0.88 FGL1fibrinogen-like 1 (205305_at), score: 0.89 FLRT3fibronectin leucine rich transmembrane protein 3 (219250_s_at), score: -0.63 GAB1GRB2-associated binding protein 1 (207112_s_at), score: -0.84 GABARAPL1GABA(A) receptor-associated protein like 1 (208868_s_at), score: 0.55 GABARAPL3GABA(A) receptors associated protein like 3 (pseudogene) (211458_s_at), score: 0.53 GBA3glucosidase, beta, acid 3 (cytosolic) (219954_s_at), score: 0.68 GNG4guanine nucleotide binding protein (G protein), gamma 4 (205184_at), score: 0.53 GPR144G protein-coupled receptor 144 (216289_at), score: 0.56 GPR32G protein-coupled receptor 32 (221469_at), score: 0.71 GRIA1glutamate receptor, ionotropic, AMPA 1 (209793_at), score: 0.51 GSTT2glutathione S-transferase theta 2 (205439_at), score: -0.52 GZMMgranzyme M (lymphocyte met-ase 1) (207460_at), score: 0.55 HAB1B1 for mucin (215778_x_at), score: 0.72 HAMPhepcidin antimicrobial peptide (220491_at), score: 0.73 HAND1heart and neural crest derivatives expressed 1 (220138_at), score: 0.54 HGFhepatocyte growth factor (hepapoietin A; scatter factor) (209960_at), score: -0.66 HIST1H1Chistone cluster 1, H1c (209398_at), score: -0.56 HOXD4homeobox D4 (205522_at), score: 0.61 HRH1histamine receptor H1 (205580_s_at), score: -0.58 HTR1E5-hydroxytryptamine (serotonin) receptor 1E (207404_s_at), score: 0.53 HUNKhormonally up-regulated Neu-associated kinase (219535_at), score: 0.53 HYIhydroxypyruvate isomerase homolog (E. coli) (221435_x_at), score: -0.55 IDI2isopentenyl-diphosphate delta isomerase 2 (217631_at), score: 0.65 IFNA7interferon, alpha 7 (208259_x_at), score: 0.62 IGHG1immunoglobulin heavy constant gamma 1 (G1m marker) (211693_at), score: 0.52 IKZF5IKAROS family zinc finger 5 (Pegasus) (220086_at), score: -0.57 IL1RNinterleukin 1 receptor antagonist (212657_s_at), score: 0.56 IL21Rinterleukin 21 receptor (219971_at), score: -0.54 IL22RA1interleukin 22 receptor, alpha 1 (220056_at), score: 0.52 ITM2Aintegral membrane protein 2A (202746_at), score: -0.89 KCTD15potassium channel tetramerisation domain containing 15 (218553_s_at), score: 0.53 KIAA1659KIAA1659 protein (215674_at), score: 0.54 LEPREL2leprecan-like 2 (204854_at), score: -0.55 LGALS14lectin, galactoside-binding, soluble, 14 (220158_at), score: 0.54 LILRB3leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 (211133_x_at), score: 0.73 LNPEPleucyl/cystinyl aminopeptidase (207904_s_at), score: -0.64 LOC100129624hypothetical LOC100129624 (210748_at), score: 0.59 LOC100133748similar to GTF2IRD2 protein (215569_at), score: 0.54 LOC646808hypothetical LOC646808 (222338_x_at), score: 0.56 LPHN1latrophilin 1 (203488_at), score: 0.76 LRP2low density lipoprotein-related protein 2 (205710_at), score: -0.56 MAGOH2mago-nashi homolog 2, proliferation-associated (Drosophila) (217692_at), score: 0.65 MAP3K5mitogen-activated protein kinase kinase kinase 5 (203837_at), score: -0.57 MAPK8mitogen-activated protein kinase 8 (210671_x_at), score: 0.7 MEF2Bmyocyte enhancer factor 2B (209926_at), score: 0.68 MEOX1mesenchyme homeobox 1 (205619_s_at), score: 0.85 MID2midline 2 (208384_s_at), score: 0.57 MMP1matrix metallopeptidase 1 (interstitial collagenase) (204475_at), score: -0.58 MPP2membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) (213270_at), score: 0.59 MUC3Bmucin 3B, cell surface associated (214898_x_at), score: 0.55 MYH15myosin, heavy chain 15 (215331_at), score: 0.54 N4BP3Nedd4 binding protein 3 (214775_at), score: 0.52 NDPNorrie disease (pseudoglioma) (206022_at), score: -0.66 NEBLnebulette (216882_s_at), score: 0.53 NOL10nucleolar protein 10 (218591_s_at), score: 0.77 NPC2Niemann-Pick disease, type C2 (200701_at), score: -0.53 NR2C2nuclear receptor subfamily 2, group C, member 2 (206038_s_at), score: 0.55 NRCAMneuronal cell adhesion molecule (216959_x_at), score: 0.62 NUPL2nucleoporin like 2 (204003_s_at), score: 0.63 NXPH3neurexophilin 3 (221991_at), score: 0.6 OPRL1opiate receptor-like 1 (206564_at), score: 0.6 PARD6Apar-6 partitioning defective 6 homolog alpha (C. elegans) (205245_at), score: 0.89 PDE8Bphosphodiesterase 8B (213228_at), score: 0.6 PHF7PHD finger protein 7 (215622_x_at), score: 0.64 PIWIL1piwi-like 1 (Drosophila) (214868_at), score: 0.66 PLAC8placenta-specific 8 (219014_at), score: 0.54 PLCL1phospholipase C-like 1 (205934_at), score: -0.66 PNMAL1PNMA-like 1 (218824_at), score: -0.71 POLG2polymerase (DNA directed), gamma 2, accessory subunit (205811_at), score: -0.53 POM121L9PPOM121 membrane glycoprotein-like 9 (rat) pseudogene (222253_s_at), score: 0.59 POU4F1POU class 4 homeobox 1 (206940_s_at), score: 0.7 PPP1R13Bprotein phosphatase 1, regulatory (inhibitor) subunit 13B (216347_s_at), score: 0.89 PRLHprolactin releasing hormone (221443_x_at), score: 0.55 PROX1prospero homeobox 1 (207401_at), score: -0.55 PTPN6protein tyrosine phosphatase, non-receptor type 6 (206687_s_at), score: 0.73 RARBretinoic acid receptor, beta (205080_at), score: 0.53 RNF19Aring finger protein 19A (220483_s_at), score: 0.95 RP11-138L21.1similar to cell recognition molecule CASPR3 (220436_at), score: -0.54 RPAP2RNA polymerase II associated protein 2 (219504_s_at), score: 0.57 S100A14S100 calcium binding protein A14 (218677_at), score: 0.61 SAA4serum amyloid A4, constitutive (207096_at), score: 0.82 SDPRserum deprivation response (phosphatidylserine binding protein) (218711_s_at), score: -0.54 SETD1ASET domain containing 1A (213202_at), score: 0.67 SIGLEC6sialic acid binding Ig-like lectin 6 (210796_x_at), score: 0.64 SLC1A7solute carrier family 1 (glutamate transporter), member 7 (210923_at), score: 0.57 SLC9A3R1solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 (201349_at), score: 0.79 SNTG1syntrophin, gamma 1 (220405_at), score: -0.72 SPAG1sperm associated antigen 1 (210117_at), score: -0.53 SPATA1spermatogenesis associated 1 (221057_at), score: 0.59 ST6GAL1ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 (201998_at), score: 0.59 SYT1synaptotagmin I (203999_at), score: -0.61 SYT5synaptotagmin V (206161_s_at), score: 0.68 TGFBR2transforming growth factor, beta receptor II (70/80kDa) (207334_s_at), score: -0.62 THRAthyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) (35846_at), score: 0.71 TLR4toll-like receptor 4 (221060_s_at), score: -0.57 TMEM92transmembrane protein 92 (216791_at), score: 0.63 TNK1tyrosine kinase, non-receptor, 1 (217149_x_at), score: 0.56 TOM1target of myb1 (chicken) (202807_s_at), score: 0.52 TTTY9Atestis-specific transcript, Y-linked 9A (211460_at), score: 0.74 TUBD1tubulin, delta 1 (210389_x_at), score: -0.52 TULP2tubby like protein 2 (206733_at), score: 0.59 TYMPthymidine phosphorylase (217497_at), score: 0.6 UBE2Oubiquitin-conjugating enzyme E2O (218141_at), score: -0.63 ZNF137zinc finger protein 137 (207394_at), score: 0.57 ZNF460zinc finger protein 460 (216279_at), score: -0.83 ZNF711zinc finger protein 711 (207781_s_at), score: 0.61
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-TABM-263-raw-cel-1515485711.cel | 4 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515485791.cel | 8 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-GEOD-3860-raw-cel-1561690272.cel | 7 | 5 | HGPS | hgu133a | HGPS | AG11498 |
| E-GEOD-3860-raw-cel-1561690215.cel | 2 | 5 | HGPS | hgu133a | HGPS | AG11513 |
