Previous module | Next module Module #782, TG: 2.6, TC: 1.8, 132 probes, 132 Entrez genes, 8 conditions

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Expression data for module #782

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Under-expression is coded with green, over-expression with red color.

Help | Hide | Top The GO tree — Biological processes

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Help | Hide | Top The GO tree — Cellular Components

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extracellular region

The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

cellular_component

The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

proteinaceous extracellular matrix

A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity.

extracellular matrix

A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants).

extracellular region part

Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.

all

This term is the most general term possible

extracellular region part

Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.

Help | Hide | Top The GO tree — Molecular Function

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Help | Show | Top GO BP test for over-representation

Help | Show | Top GO CC test for over-representation

Help | Show | Top GO MF test for over-representation

Help | Hide | Top KEGG Pathway test for over-representation

Id Pvalue ExpCount Count Size Term
00040 3.442e-02 0.1741 3
 13 Pentose and glucuronate interconversions

Help | Hide | Top miRNA test for over-representation

Id Pvalue ExpCount Count Size
miR-23ab 4.118e-02 8.172 22
 551

Help | Hide | Top Chromosome test for over-representation

No enriched terms

Help | Hide | Top Genes

Entrez genes

ABCB1ATP-binding cassette, sub-family B (MDR/TAP), member 1 (209993_at), score: 1 ABHD14Aabhydrolase domain containing 14A (210006_at), score: -0.53 AHNAK2AHNAK nucleoprotein 2 (212992_at), score: -0.46 AIM2absent in melanoma 2 (206513_at), score: 0.67 APOL3apolipoprotein L, 3 (221087_s_at), score: 0.61 ARNTLaryl hydrocarbon receptor nuclear translocator-like (209824_s_at), score: -0.47 BAALCbrain and acute leukemia, cytoplasmic (218899_s_at), score: -0.54 BAZ2Abromodomain adjacent to zinc finger domain, 2A (201353_s_at), score: 0.66 BHMT2betaine-homocysteine methyltransferase 2 (219902_at), score: 0.63 C10orf116chromosome 10 open reading frame 116 (203571_s_at), score: -0.6 C20orf149chromosome 20 open reading frame 149 (218010_x_at), score: -0.47 C3orf64chromosome 3 open reading frame 64 (221935_s_at), score: -0.56 C4orf31chromosome 4 open reading frame 31 (219747_at), score: -0.76 C5orf23chromosome 5 open reading frame 23 (219054_at), score: -0.47 C5orf30chromosome 5 open reading frame 30 (221823_at), score: -0.61 CAPGcapping protein (actin filament), gelsolin-like (201850_at), score: -0.47 CDR2Lcerebellar degeneration-related protein 2-like (213230_at), score: -0.57 CGBchorionic gonadotropin, beta polypeptide (205387_s_at), score: -0.54 CH25Hcholesterol 25-hydroxylase (206932_at), score: -0.46 CKBcreatine kinase, brain (200884_at), score: -0.48 COL11A1collagen, type XI, alpha 1 (37892_at), score: -0.49 COL8A2collagen, type VIII, alpha 2 (221900_at), score: -0.53 COMPcartilage oligomeric matrix protein (205713_s_at), score: -0.65 COPZ2coatomer protein complex, subunit zeta 2 (219561_at), score: -0.46 CRATcarnitine acetyltransferase (209522_s_at), score: -0.46 CRTAPcartilage associated protein (201380_at), score: -0.52 CRYABcrystallin, alpha B (209283_at), score: -0.53 DDX17DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (208151_x_at), score: 0.78 DDX3XDEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked (201211_s_at), score: 0.62 DUSP14dual specificity phosphatase 14 (203367_at), score: -0.49 ECM1extracellular matrix protein 1 (209365_s_at), score: -0.49 EIF1AYeukaryotic translation initiation factor 1A, Y-linked (204409_s_at), score: -0.49 FAM108A1family with sequence similarity 108, member A1 (221267_s_at), score: -0.55 FAM169Afamily with sequence similarity 169, member A (213954_at), score: 0.65 FASFas (TNF receptor superfamily, member 6) (204780_s_at), score: -0.51 FAT1FAT tumor suppressor homolog 1 (Drosophila) (201579_at), score: -0.55 FBN2fibrillin 2 (203184_at), score: -0.48 FBXW7F-box and WD repeat domain containing 7 (218751_s_at), score: -0.47 FKBP9FK506 binding protein 9, 63 kDa (212169_at), score: -0.61 GABBR2gamma-aminobutyric acid (GABA) B receptor, 2 (209990_s_at), score: -0.53 GAGE4G antigen 4 (207086_x_at), score: 0.87 GAGE6G antigen 6 (208155_x_at), score: 0.86 GAS6growth arrest-specific 6 (202177_at), score: -0.58 GATA3GATA binding protein 3 (209604_s_at), score: 0.77 GLSglutaminase (203159_at), score: -0.54 GLTPglycolipid transfer protein (219267_at), score: -0.52 HAS2hyaluronan synthase 2 (206432_at), score: -0.53 HERC5hect domain and RLD 5 (219863_at), score: 0.72 HGSNATheparan-alpha-glucosaminide N-acetyltransferase (218017_s_at), score: -0.51 HIST1H4Chistone cluster 1, H4c (205967_at), score: -0.51 HIST2H2AA3histone cluster 2, H2aa3 (214290_s_at), score: -0.52 HIVEP2human immunodeficiency virus type I enhancer binding protein 2 (212642_s_at), score: -0.53 HSPB2heat shock 27kDa protein 2 (205824_at), score: -0.49 HSPB7heat shock 27kDa protein family, member 7 (cardiovascular) (218934_s_at), score: -0.68 IFI16interferon, gamma-inducible protein 16 (208965_s_at), score: 0.61 IGFBP3insulin-like growth factor binding protein 3 (212143_s_at), score: -0.57 IRS2insulin receptor substrate 2 (209185_s_at), score: -0.62 IRX5iroquois homeobox 5 (210239_at), score: -0.55 ISLRimmunoglobulin superfamily containing leucine-rich repeat (207191_s_at), score: -0.59 KIAA0495KIAA0495 (213340_s_at), score: -0.56 KRT14keratin 14 (209351_at), score: -0.52 KRT19keratin 19 (201650_at), score: -0.51 LBHlimb bud and heart development homolog (mouse) (221011_s_at), score: -0.5 LOC728855hypothetical LOC728855 (222001_x_at), score: 0.66 LRRFIP1leucine rich repeat (in FLII) interacting protein 1 (201861_s_at), score: -0.49 LTBP2latent transforming growth factor beta binding protein 2 (204682_at), score: -0.49 M6PRmannose-6-phosphate receptor (cation dependent) (200900_s_at), score: 0.63 MALLmal, T-cell differentiation protein-like (209373_at), score: -0.46 MAN2A1mannosidase, alpha, class 2A, member 1 (205105_at), score: -0.48 MARK1MAP/microtubule affinity-regulating kinase 1 (221047_s_at), score: 0.8 MFAP5microfibrillar associated protein 5 (213764_s_at), score: -0.57 MITFmicrophthalmia-associated transcription factor (207233_s_at), score: 0.68 MT1Mmetallothionein 1M (217546_at), score: -0.54 MT1P3metallothionein 1 pseudogene 3 (221953_s_at), score: -0.51 MYO1Cmyosin IC (214656_x_at), score: -0.65 NDNnecdin homolog (mouse) (209550_at), score: -0.52 NEFLneurofilament, light polypeptide (221805_at), score: 0.7 NRGNneurogranin (protein kinase C substrate, RC3) (204081_at), score: 0.62 NTF3neurotrophin 3 (206706_at), score: -0.5 OASL2'-5'-oligoadenylate synthetase-like (210797_s_at), score: 0.93 ODZ4odz, odd Oz/ten-m homolog 4 (Drosophila) (213273_at), score: -0.47 OPCMLopioid binding protein/cell adhesion molecule-like (214111_at), score: -0.49 PBX1pre-B-cell leukemia homeobox 1 (212148_at), score: -0.54 PDE10Aphosphodiesterase 10A (205501_at), score: 0.65 PDPK13-phosphoinositide dependent protein kinase-1 (204524_at), score: -0.48 PILRBpaired immunoglobin-like type 2 receptor beta (220954_s_at), score: 0.64 PNMA2paraneoplastic antigen MA2 (209598_at), score: 0.59 PODXLpodocalyxin-like (201578_at), score: -0.57 PPP1R3Cprotein phosphatase 1, regulatory (inhibitor) subunit 3C (204284_at), score: -0.46 PSG2pregnancy specific beta-1-glycoprotein 2 (208134_x_at), score: -0.47 PSMB4proteasome (prosome, macropain) subunit, beta type, 4 (202243_s_at), score: -0.56 PTGER3prostaglandin E receptor 3 (subtype EP3) (213933_at), score: -0.49 PTPRBprotein tyrosine phosphatase, receptor type, B (205846_at), score: -0.62 PTPRRprotein tyrosine phosphatase, receptor type, R (210675_s_at), score: -0.46 QPCTglutaminyl-peptide cyclotransferase (205174_s_at), score: -0.46 RAB40BRAB40B, member RAS oncogene family (204547_at), score: -0.54 RABGAP1LRAB GTPase activating protein 1-like (213982_s_at), score: -0.49 RAD23BRAD23 homolog B (S. cerevisiae) (201223_s_at), score: -0.64 RASIP1Ras interacting protein 1 (220027_s_at), score: -0.48 RBM3RNA binding motif (RNP1, RRM) protein 3 (222026_at), score: -0.49 SCG5secretogranin V (7B2 protein) (203889_at), score: -0.56 SERPINE2serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 (212190_at), score: -0.46 SGCDsarcoglycan, delta (35kDa dystrophin-associated glycoprotein) (213543_at), score: -0.55 SLC16A1solute carrier family 16, member 1 (monocarboxylic acid transporter 1) (209900_s_at), score: -0.54 SLC30A1solute carrier family 30 (zinc transporter), member 1 (212907_at), score: -0.5 SLC4A4solute carrier family 4, sodium bicarbonate cotransporter, member 4 (203908_at), score: -0.57 SLC7A11solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 (217678_at), score: 0.64 SMEK1SMEK homolog 1, suppressor of mek1 (Dictyostelium) (220368_s_at), score: 0.61 SMG1SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) (210057_at), score: 0.6 SNCAsynuclein, alpha (non A4 component of amyloid precursor) (204466_s_at), score: 0.71 SSR3signal sequence receptor, gamma (translocon-associated protein gamma) (217790_s_at), score: -0.56 SYTL2synaptotagmin-like 2 (220613_s_at), score: 0.67 TACSTD2tumor-associated calcium signal transducer 2 (202286_s_at), score: -0.56 TCEAL2transcription elongation factor A (SII)-like 2 (211276_at), score: 0.81 TERF1telomeric repeat binding factor (NIMA-interacting) 1 (203448_s_at), score: 0.61 TIMP2TIMP metallopeptidase inhibitor 2 (203167_at), score: -0.67 TMEM204transmembrane protein 204 (219315_s_at), score: -0.51 TMEM47transmembrane protein 47 (209656_s_at), score: -0.5 TMEM51transmembrane protein 51 (218815_s_at), score: 0.61 TMEM8transmembrane protein 8 (five membrane-spanning domains) (221882_s_at), score: -0.48 TMOD1tropomodulin 1 (203661_s_at), score: 0.65 TOB1transducer of ERBB2, 1 (202704_at), score: -0.52 TSPAN13tetraspanin 13 (217979_at), score: -0.62 TSPYL5TSPY-like 5 (213122_at), score: -0.48 UAP1UDP-N-acteylglucosamine pyrophosphorylase 1 (209340_at), score: -0.62 UBL3ubiquitin-like 3 (201535_at), score: -0.62 UGT1A1UDP glucuronosyltransferase 1 family, polypeptide A1 (207126_x_at), score: 0.85 UGT1A6UDP glucuronosyltransferase 1 family, polypeptide A6 (206094_x_at), score: 0.87 UGT1A9UDP glucuronosyltransferase 1 family, polypeptide A9 (204532_x_at), score: 0.87 USP18ubiquitin specific peptidase 18 (219211_at), score: 0.59 WNT5Bwingless-type MMTV integration site family, member 5B (221029_s_at), score: -0.52 WT1Wilms tumor 1 (206067_s_at), score: 0.6

Non-Entrez genes

Unknown, score:

Help | Hide | Top Conditions

Id sample Experiment ExpName Array Syndrome Cell.line
E-GEOD-3860-raw-cel-1561690360.cel 12 5 HGPS hgu133a none GM0316B
E-GEOD-3860-raw-cel-1561690416.cel 15 5 HGPS hgu133a none GM0316B
E-GEOD-3860-raw-cel-1561690199.cel 1 5 HGPS hgu133a none GM0316B
E-GEOD-3407-raw-cel-1437949854.cel 7 4 Cockayne hgu133a CS eGFP
E-GEOD-3407-raw-cel-1437949938.cel 8 4 Cockayne hgu133a none CSB
E-GEOD-3407-raw-cel-1437949579.cel 2 4 Cockayne hgu133a none CSB
E-GEOD-3407-raw-cel-1437949721.cel 5 4 Cockayne hgu133a CS CSB
E-GEOD-3407-raw-cel-1437949750.cel 6 4 Cockayne hgu133a CS CSB

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