Under-expression is coded with green,
over-expression with red color.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
all
This term is the most general term possible
membrane
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
extracellular region
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
extracellular space
That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
intrinsic to membrane
Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.
anchored to membrane
Tethered to a membrane by a covalently attached anchor, such as a lipid moiety, that is embedded in the membrane. When used to describe a protein, indicates that none of the peptide sequence is embedded in the membrane.
extracellular region part
Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
all
This term is the most general term possible
extracellular region part
Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
molecular_function
Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
signal transducer activity
Mediates the transfer of a signal from the outside to the inside of a cell by means other than the introduction of the signal molecule itself into the cell.
receptor activity
Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
transmembrane receptor activity
Combining with an extracellular or intracellular messenger to initiate a change in cell activity, and spanning to the membrane of either the cell or an organelle.
molecular transducer activity
The molecular function that accepts an input of one form and creates an output of a different form.
all
This term is the most general term possible
A1CFAPOBEC1 complementation factor (220951_s_at), score: 0.9 ABCG4ATP-binding cassette, sub-family G (WHITE), member 4 (207593_at), score: 0.77 ABOABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (216716_at), score: 0.73 ADAMTS7ADAM metallopeptidase with thrombospondin type 1 motif, 7 (220705_s_at), score: 0.77 ADAMTS9ADAM metallopeptidase with thrombospondin type 1 motif, 9 (220287_at), score: 0.8 ADAMTSL4ADAMTS-like 4 (220578_at), score: 0.75 AFF2AF4/FMR2 family, member 2 (206105_at), score: 0.76 AGMATagmatine ureohydrolase (agmatinase) (219792_at), score: 0.8 AIPL1aryl hydrocarbon receptor interacting protein-like 1 (219977_at), score: 0.84 APOMapolipoprotein M (205682_x_at), score: 0.77 BEANbrain expressed, associated with Nedd4 (214068_at), score: 0.73 BEND5BEN domain containing 5 (219670_at), score: 0.73 BMP10bone morphogenetic protein 10 (208292_at), score: 0.79 BTNL3butyrophilin-like 3 (217207_s_at), score: 0.92 C10orf59chromosome 10 open reading frame 59 (220564_at), score: 0.78 C1orf61chromosome 1 open reading frame 61 (205103_at), score: 0.84 C7orf28Achromosome 7 open reading frame 28A (201974_s_at), score: 0.87 C8orf17chromosome 8 open reading frame 17 (208266_at), score: 0.76 C8orf60chromosome 8 open reading frame 60 (220712_at), score: 0.91 CA4carbonic anhydrase IV (206209_s_at), score: 0.8 CALB1calbindin 1, 28kDa (205626_s_at), score: 0.77 CASZ1castor zinc finger 1 (220015_at), score: 0.8 CCDC9coiled-coil domain containing 9 (206257_at), score: 0.74 CD53CD53 molecule (203416_at), score: 0.82 CEACAM5carcinoembryonic antigen-related cell adhesion molecule 5 (201884_at), score: 0.75 CEACAM6carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) (211657_at), score: 0.78 CHD2chromodomain helicase DNA binding protein 2 (203461_at), score: 0.8 CHN2chimerin (chimaerin) 2 (207486_x_at), score: 0.83 CHST4carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4 (220446_s_at), score: 0.86 CLDN10claudin 10 (205328_at), score: 0.83 CLDN18claudin 18 (214135_at), score: 0.73 CLEC4MC-type lectin domain family 4, member M (207995_s_at), score: 0.83 CLEC7AC-type lectin domain family 7, member A (221698_s_at), score: 0.79 CNKSR2connector enhancer of kinase suppressor of Ras 2 (206731_at), score: 0.77 COL11A2collagen, type XI, alpha 2 (216993_s_at), score: 0.97 CTSEcathepsin E (205927_s_at), score: 0.82 CXorf21chromosome X open reading frame 21 (220252_x_at), score: 0.74 CYP2A6cytochrome P450, family 2, subfamily A, polypeptide 6 (211295_x_at), score: 0.84 CYP3A4cytochrome P450, family 3, subfamily A, polypeptide 4 (205998_x_at), score: 0.84 DMBT1deleted in malignant brain tumors 1 (208250_s_at), score: 0.79 DNASE1L3deoxyribonuclease I-like 3 (205554_s_at), score: 0.91 DOHHdeoxyhypusine hydroxylase/monooxygenase (208141_s_at), score: 0.78 DRD5dopamine receptor D5 (208486_at), score: 0.9 EDARectodysplasin A receptor (220048_at), score: 0.73 EPAGearly lymphoid activation protein (217050_at), score: 0.76 FAM38Bfamily with sequence similarity 38, member B (219602_s_at), score: 0.88 FAM75A3family with sequence similarity 75, member A3 (215935_at), score: 0.8 FGL1fibrinogen-like 1 (205305_at), score: 0.86 FOLH1folate hydrolase (prostate-specific membrane antigen) 1 (217487_x_at), score: 0.81 GBA3glucosidase, beta, acid 3 (cytosolic) (219954_s_at), score: 0.75 GK2glycerol kinase 2 (215430_at), score: 0.74 GNG4guanine nucleotide binding protein (G protein), gamma 4 (205184_at), score: 0.77 GP1BAglycoprotein Ib (platelet), alpha polypeptide (207389_at), score: 0.79 GPATCH4G patch domain containing 4 (220596_at), score: 0.76 GPR12G protein-coupled receptor 12 (214558_at), score: 0.8 GRHL2grainyhead-like 2 (Drosophila) (219388_at), score: 0.74 HAB1B1 for mucin (215778_x_at), score: 0.81 HAO2hydroxyacid oxidase 2 (long chain) (220801_s_at), score: 0.84 HIST1H4Dhistone cluster 1, H4d (208076_at), score: 0.76 HOXD4homeobox D4 (205522_at), score: 0.75 HS3ST2heparan sulfate (glucosamine) 3-O-sulfotransferase 2 (219697_at), score: 0.8 IL16interleukin 16 (lymphocyte chemoattractant factor) (209827_s_at), score: 0.74 INE1inactivation escape 1 (non-protein coding) (207252_at), score: 0.79 KCNJ16potassium inwardly-rectifying channel, subfamily J, member 16 (219564_at), score: 0.79 KIR3DX1killer cell immunoglobulin-like receptor, three domains, X1 (216428_x_at), score: 0.81 KLF1Kruppel-like factor 1 (erythroid) (210504_at), score: 0.82 KMOkynurenine 3-monooxygenase (kynurenine 3-hydroxylase) (205307_s_at), score: 0.85 KRT2keratin 2 (207908_at), score: 0.76 LHX3LIM homeobox 3 (221670_s_at), score: 0.92 LOC100188945cell division cycle associated 4 pseudogene (215109_at), score: 0.9 LOC389906similar to Serine/threonine-protein kinase PRKX (Protein kinase PKX1) (59433_at), score: 0.73 LOC80054hypothetical LOC80054 (220465_at), score: 0.76 LOH3CR2Aloss of heterozygosity, 3, chromosomal region 2, gene A (220244_at), score: 0.75 LY6Hlymphocyte antigen 6 complex, locus H (206773_at), score: 0.74 MBmyoglobin (204179_at), score: 0.79 MFNGMFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase (204153_s_at), score: 0.85 MMP9matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) (203936_s_at), score: 0.75 MMRN2multimerin 2 (219091_s_at), score: 0.82 MOBPmyelin-associated oligodendrocyte basic protein (210193_at), score: 0.95 MSTP9macrophage stimulating, pseudogene 9 (213382_at), score: 0.77 MUC3Amucin 3A, cell surface associated (217117_x_at), score: 0.78 MYL4myosin, light chain 4, alkali; atrial, embryonic (210088_x_at), score: 0.83 MYO1Amyosin IA (211916_s_at), score: 0.82 N4BP3Nedd4 binding protein 3 (214775_at), score: 0.92 NCRNA00092non-protein coding RNA 92 (215861_at), score: 0.79 NCRNA00093non-protein coding RNA 93 (210723_x_at), score: 0.81 NEUROD2neurogenic differentiation 2 (210271_at), score: 0.74 NOTCH4Notch homolog 4 (Drosophila) (205247_at), score: 0.8 NPY2Rneuropeptide Y receptor Y2 (210730_s_at), score: 0.76 NRN1neuritin 1 (218625_at), score: 0.77 NTRK2neurotrophic tyrosine kinase, receptor, type 2 (207152_at), score: 0.85 OCLMoculomedin (208274_at), score: 0.78 OR1E2olfactory receptor, family 1, subfamily E, member 2 (208587_s_at), score: 0.76 OR7E24olfactory receptor, family 7, subfamily E, member 24 (215463_at), score: 0.97 PECAM1platelet/endothelial cell adhesion molecule (208982_at), score: 1 PEG3paternally expressed 3 (209242_at), score: 0.78 PGCprogastricsin (pepsinogen C) (205261_at), score: 0.75 PGK2phosphoglycerate kinase 2 (217009_at), score: 0.79 PIPOXpipecolic acid oxidase (221605_s_at), score: 0.76 PLUNCpalate, lung and nasal epithelium associated (220542_s_at), score: 0.77 PON1paraoxonase 1 (206344_at), score: 0.78 PPP4R4protein phosphatase 4, regulatory subunit 4 (220672_at), score: 0.76 PRB3proline-rich protein BstNI subfamily 3 (206998_x_at), score: 0.79 PROL1proline rich, lacrimal 1 (208004_at), score: 0.73 PRSS7protease, serine, 7 (enterokinase) (217269_s_at), score: 0.89 PYHIN1pyrin and HIN domain family, member 1 (216748_at), score: 0.9 RETret proto-oncogene (205879_x_at), score: 0.87 RICH2Rho-type GTPase-activating protein RICH2 (215232_at), score: 0.77 ROS1c-ros oncogene 1 , receptor tyrosine kinase (207569_at), score: 0.76 RP11-35N6.1plasticity related gene 3 (219732_at), score: 0.84 RP3-377H14.5hypothetical LOC285830 (222279_at), score: 0.77 RP5-886K2.1neuronal thread protein AD7c-NTP (207953_at), score: 0.78 RPGRIP1retinitis pigmentosa GTPase regulator interacting protein 1 (206608_s_at), score: 0.92 S100A14S100 calcium binding protein A14 (218677_at), score: 0.96 SCN10Asodium channel, voltage-gated, type X, alpha subunit (208578_at), score: 0.82 SERPINA1serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 (211429_s_at), score: 0.78 SFTPBsurfactant protein B (214354_x_at), score: 0.79 SIGLEC6sialic acid binding Ig-like lectin 6 (210796_x_at), score: 0.73 SLC10A1solute carrier family 10 (sodium/bile acid cotransporter family), member 1 (207185_at), score: 0.82 SLC15A1solute carrier family 15 (oligopeptide transporter), member 1 (211349_at), score: 0.84 SLC1A7solute carrier family 1 (glutamate transporter), member 7 (210923_at), score: 0.78 SLC26A10solute carrier family 26, member 10 (214951_at), score: 0.85 SLC4A5solute carrier family 4, sodium bicarbonate cotransporter, member 5 (204296_at), score: 0.76 SOCS3suppressor of cytokine signaling 3 (206359_at), score: 0.75 SPAG6sperm associated antigen 6 (210033_s_at), score: 0.77 SULT1B1sulfotransferase family, cytosolic, 1B, member 1 (207601_at), score: 0.8 TAAR2trace amine associated receptor 2 (221394_at), score: 0.74 TACR1tachykinin receptor 1 (208048_at), score: 0.82 TAS2R9taste receptor, type 2, member 9 (221461_at), score: 0.78 TBX21T-box 21 (220684_at), score: 0.9 TBX6T-box 6 (207684_at), score: 0.81 TMEM92transmembrane protein 92 (216791_at), score: 0.75 TMSB4Ythymosin beta 4, Y-linked (206769_at), score: 0.78 TP63tumor protein p63 (209863_s_at), score: 0.79 TRA@T cell receptor alpha locus (216540_at), score: 0.95 TSPY1testis specific protein, Y-linked 1 (216374_at), score: 0.74 VGFVGF nerve growth factor inducible (205586_x_at), score: 0.87
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-TABM-263-raw-cel-1515485651.cel | 1 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515485831.cel | 10 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486011.cel | 19 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515485871.cel | 12 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486071.cel | 22 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-GEOD-4219-raw-cel-1311956358.cel | 10 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| 46A.CEL | 1 | 3 | DS-mosaic | hgu133plus2 | none | DS-mosaic 1 |
| E-TABM-263-raw-cel-1515485711.cel | 4 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| 6Twin.CEL | 6 | 2 | DS-twin | hgu133plus2 | none | DS-twin 6 |
| ctrl c 08-03.CEL | 3 | 1 | DS-CC | hgu133a | none | DS-CC 3 |
| E-GEOD-3407-raw-cel-1437949557.cel | 1 | 4 | Cockayne | hgu133a | CS | eGFP |
| 2Twin.CEL | 2 | 2 | DS-twin | hgu133plus2 | none | DS-twin 2 |
| t21d 08-03.CEL | 7 | 1 | DS-CC | hgu133a | Down | DS-CC 7 |
| t21a 08-03.CEL | 4 | 1 | DS-CC | hgu133a | Down | DS-CC 4 |
| ctrl a 08-03.CEL | 1 | 1 | DS-CC | hgu133a | none | DS-CC 1 |
