Under-expression is coded with green,
over-expression with red color.
extracellular region
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
proteinaceous extracellular matrix
A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity.
extracellular matrix
A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as in plants).
extracellular matrix part
Any constituent part of the extracellular matrix, the structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as often seen in plants).
extracellular region part
Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.
all
This term is the most general term possible
extracellular region part
Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.
extracellular matrix part
Any constituent part of the extracellular matrix, the structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as often seen in plants).
A2Malpha-2-macroglobulin (217757_at), score: 0.6 ABCB1ATP-binding cassette, sub-family B (MDR/TAP), member 1 (209993_at), score: 1 ABHD14Aabhydrolase domain containing 14A (210006_at), score: -0.51 ACIN1apoptotic chromatin condensation inducer 1 (201715_s_at), score: 0.57 AIM2absent in melanoma 2 (206513_at), score: 0.63 AKAP8LA kinase (PRKA) anchor protein 8-like (218064_s_at), score: 0.54 ANP32Aacidic (leucine-rich) nuclear phosphoprotein 32 family, member A (201043_s_at), score: 0.53 APOBEC3Fapolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F (214995_s_at), score: 0.51 APOBEC3Gapolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G (204205_at), score: 0.51 APOL3apolipoprotein L, 3 (221087_s_at), score: 0.51 ATP6V1B2ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 (201089_at), score: 0.58 BAALCbrain and acute leukemia, cytoplasmic (218899_s_at), score: -0.46 BACE1beta-site APP-cleaving enzyme 1 (217904_s_at), score: -0.41 BAZ2Abromodomain adjacent to zinc finger domain, 2A (201353_s_at), score: 0.6 BHMT2betaine-homocysteine methyltransferase 2 (219902_at), score: 0.56 C10orf116chromosome 10 open reading frame 116 (203571_s_at), score: -0.45 C3orf64chromosome 3 open reading frame 64 (221935_s_at), score: -0.46 C4orf31chromosome 4 open reading frame 31 (219747_at), score: -0.55 C5orf23chromosome 5 open reading frame 23 (219054_at), score: -0.4 C5orf30chromosome 5 open reading frame 30 (221823_at), score: -0.54 CD24CD24 molecule (266_s_at), score: 0.55 CDKN1Acyclin-dependent kinase inhibitor 1A (p21, Cip1) (202284_s_at), score: -0.4 CDR2Lcerebellar degeneration-related protein 2-like (213230_at), score: -0.53 CLINT1clathrin interactor 1 (201768_s_at), score: 0.48 COL11A1collagen, type XI, alpha 1 (37892_at), score: -0.46 COL7A1collagen, type VII, alpha 1 (217312_s_at), score: 0.51 COMPcartilage oligomeric matrix protein (205713_s_at), score: -0.44 COPZ2coatomer protein complex, subunit zeta 2 (219561_at), score: -0.43 CRTAPcartilage associated protein (201380_at), score: -0.55 CRYABcrystallin, alpha B (209283_at), score: -0.56 CTTNcortactin (201059_at), score: -0.4 DDX17DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (208151_x_at), score: 0.76 DDX28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 (203785_s_at), score: 0.48 DDX3XDEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked (201211_s_at), score: 0.59 DGKDdiacylglycerol kinase, delta 130kDa (208072_s_at), score: 0.5 DHX9DEAH (Asp-Glu-Ala-His) box polypeptide 9 (212105_s_at), score: 0.52 DIO2deiodinase, iodothyronine, type II (203700_s_at), score: 0.61 DND1dead end homolog 1 (zebrafish) (57739_at), score: 0.49 DUSP14dual specificity phosphatase 14 (203367_at), score: -0.48 ECM1extracellular matrix protein 1 (209365_s_at), score: -0.43 ECSITECSIT homolog (Drosophila) (218225_at), score: 0.48 EPHB2EPH receptor B2 (209589_s_at), score: 0.66 FAM108A1family with sequence similarity 108, member A1 (221267_s_at), score: -0.46 FAM169Afamily with sequence similarity 169, member A (213954_at), score: 0.64 FASFas (TNF receptor superfamily, member 6) (204780_s_at), score: -0.45 FAT1FAT tumor suppressor homolog 1 (Drosophila) (201579_at), score: -0.57 FKBP4FK506 binding protein 4, 59kDa (200894_s_at), score: 0.6 FKBP9FK506 binding protein 9, 63 kDa (212169_at), score: -0.67 FOLR3folate receptor 3 (gamma) (206371_at), score: -0.45 FUSfusion (involved in t(12;16) in malignant liposarcoma) (217370_x_at), score: 0.49 GABBR2gamma-aminobutyric acid (GABA) B receptor, 2 (209990_s_at), score: -0.43 GABREgamma-aminobutyric acid (GABA) A receptor, epsilon (204537_s_at), score: 0.52 GAGE4G antigen 4 (207086_x_at), score: 0.93 GAGE6G antigen 6 (208155_x_at), score: 0.89 GALNT6UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) (219956_at), score: -0.41 GAS6growth arrest-specific 6 (202177_at), score: -0.5 GATA3GATA binding protein 3 (209604_s_at), score: 0.76 GHRgrowth hormone receptor (205498_at), score: -0.43 GLE1GLE1 RNA export mediator homolog (yeast) (206920_s_at), score: 0.49 GLSglutaminase (203159_at), score: -0.45 GLTPglycolipid transfer protein (219267_at), score: -0.46 GMDSGDP-mannose 4,6-dehydratase (204875_s_at), score: 0.51 HAS2hyaluronan synthase 2 (206432_at), score: -0.53 HERC5hect domain and RLD 5 (219863_at), score: 0.67 HGSNATheparan-alpha-glucosaminide N-acetyltransferase (218017_s_at), score: -0.57 HIST1H4Chistone cluster 1, H4c (205967_at), score: -0.44 HIST2H2AA3histone cluster 2, H2aa3 (214290_s_at), score: -0.41 HIVEP2human immunodeficiency virus type I enhancer binding protein 2 (212642_s_at), score: -0.48 HLA-DPA1major histocompatibility complex, class II, DP alpha 1 (211990_at), score: 0.52 HNRNPCheterogeneous nuclear ribonucleoprotein C (C1/C2) (200751_s_at), score: 0.5 HNRNPH1heterogeneous nuclear ribonucleoprotein H1 (H) (213470_s_at), score: 0.54 HRASLSHRAS-like suppressor (219983_at), score: 0.51 HSPA4Lheat shock 70kDa protein 4-like (205543_at), score: 0.54 HSPB2heat shock 27kDa protein 2 (205824_at), score: -0.44 HSPB7heat shock 27kDa protein family, member 7 (cardiovascular) (218934_s_at), score: -0.62 HSPG2heparan sulfate proteoglycan 2 (201655_s_at), score: -0.4 IGFBP3insulin-like growth factor binding protein 3 (212143_s_at), score: -0.48 IL7interleukin 7 (206693_at), score: 0.48 IPO8importin 8 (205701_at), score: 0.55 IRS2insulin receptor substrate 2 (209185_s_at), score: -0.56 ISLRimmunoglobulin superfamily containing leucine-rich repeat (207191_s_at), score: -0.44 ITGBL1integrin, beta-like 1 (with EGF-like repeat domains) (214927_at), score: -0.4 KCNS3potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 (205968_at), score: -0.43 KIAA0495KIAA0495 (213340_s_at), score: -0.51 KRT19keratin 19 (201650_at), score: -0.4 L1CAML1 cell adhesion molecule (204584_at), score: 0.53 LAMB3laminin, beta 3 (209270_at), score: 0.5 LBHlimb bud and heart development homolog (mouse) (221011_s_at), score: -0.4 LDOC1leucine zipper, down-regulated in cancer 1 (204454_at), score: -0.48 LEF1lymphoid enhancer-binding factor 1 (221558_s_at), score: 0.48 LOC388796hypothetical LOC388796 (65588_at), score: 0.53 LOC728855hypothetical LOC728855 (222001_x_at), score: 0.6 LOC730092RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene (216908_x_at), score: 0.48 LRIG2leucine-rich repeats and immunoglobulin-like domains 2 (205953_at), score: 0.48 LRP3low density lipoprotein receptor-related protein 3 (204381_at), score: -0.41 LRRC2leucine rich repeat containing 2 (219949_at), score: -0.55 LRRFIP1leucine rich repeat (in FLII) interacting protein 1 (201861_s_at), score: -0.4 LTBP2latent transforming growth factor beta binding protein 2 (204682_at), score: -0.46 M6PRmannose-6-phosphate receptor (cation dependent) (200900_s_at), score: 0.54 MAN2A1mannosidase, alpha, class 2A, member 1 (205105_at), score: -0.54 MARCH2membrane-associated ring finger (C3HC4) 2 (210075_at), score: -0.39 MARK1MAP/microtubule affinity-regulating kinase 1 (221047_s_at), score: 0.77 MED6mediator complex subunit 6 (207079_s_at), score: 0.52 MFAP5microfibrillar associated protein 5 (213764_s_at), score: -0.57 MITFmicrophthalmia-associated transcription factor (207233_s_at), score: 0.58 MOXD1monooxygenase, DBH-like 1 (209708_at), score: -0.41 MRFAP1L1Morf4 family associated protein 1-like 1 (212199_at), score: 0.48 MSCmusculin (activated B-cell factor-1) (209928_s_at), score: 0.51 MT1Mmetallothionein 1M (217546_at), score: -0.42 MT1P3metallothionein 1 pseudogene 3 (221953_s_at), score: -0.44 MXRA8matrix-remodelling associated 8 (213422_s_at), score: -0.39 MYO1Cmyosin IC (214656_x_at), score: -0.61 NAPGN-ethylmaleimide-sensitive factor attachment protein, gamma (210048_at), score: 0.5 NCRNA00084non-protein coding RNA 84 (214657_s_at), score: 0.61 NEFLneurofilament, light polypeptide (221805_at), score: 0.69 NFASCneurofascin homolog (chicken) (213438_at), score: -0.44 NGDNneuroguidin, EIF4E binding protein (213794_s_at), score: 0.5 NMUneuromedin U (206023_at), score: 0.55 NOC2Lnucleolar complex associated 2 homolog (S. cerevisiae) (202115_s_at), score: 0.48 NOL12nucleolar protein 12 (219324_at), score: 0.51 NONOnon-POU domain containing, octamer-binding (208698_s_at), score: 0.58 NRGNneurogranin (protein kinase C substrate, RC3) (204081_at), score: 0.62 OASL2'-5'-oligoadenylate synthetase-like (210797_s_at), score: 0.96 PBLDphenazine biosynthesis-like protein domain containing (219543_at), score: -0.39 PBX1pre-B-cell leukemia homeobox 1 (212148_at), score: -0.41 PCLOpiccolo (presynaptic cytomatrix protein) (213558_at), score: 0.5 PDE10Aphosphodiesterase 10A (205501_at), score: 0.56 PDGFCplatelet derived growth factor C (218718_at), score: -0.39 PDPK13-phosphoinositide dependent protein kinase-1 (204524_at), score: -0.44 PILRBpaired immunoglobin-like type 2 receptor beta (220954_s_at), score: 0.61 PNMA2paraneoplastic antigen MA2 (209598_at), score: 0.49 PODXLpodocalyxin-like (201578_at), score: -0.51 PPM2Cprotein phosphatase 2C, magnesium-dependent, catalytic subunit (218273_s_at), score: 0.53 PPP1R3Cprotein phosphatase 1, regulatory (inhibitor) subunit 3C (204284_at), score: -0.42 PQBP1polyglutamine binding protein 1 (214527_s_at), score: 0.5 PSMB4proteasome (prosome, macropain) subunit, beta type, 4 (202243_s_at), score: -0.61 PSMB8proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7) (209040_s_at), score: 0.52 PTGER3prostaglandin E receptor 3 (subtype EP3) (213933_at), score: -0.54 PTPRBprotein tyrosine phosphatase, receptor type, B (205846_at), score: -0.41 QPCTglutaminyl-peptide cyclotransferase (205174_s_at), score: -0.49 RAB40BRAB40B, member RAS oncogene family (204547_at), score: -0.55 RAB7L1RAB7, member RAS oncogene family-like 1 (218700_s_at), score: 0.51 RABGAP1LRAB GTPase activating protein 1-like (213982_s_at), score: -0.53 RAD23BRAD23 homolog B (S. cerevisiae) (201223_s_at), score: -0.6 RARRES3retinoic acid receptor responder (tazarotene induced) 3 (204070_at), score: 0.48 RBM3RNA binding motif (RNP1, RRM) protein 3 (222026_at), score: -0.45 REEP1receptor accessory protein 1 (204364_s_at), score: 0.52 RGP1RGP1 retrograde golgi transport homolog (S. cerevisiae) (203169_at), score: 0.48 RP6-213H19.1serine/threonine protein kinase MST4 (218499_at), score: 0.57 RPP14ribonuclease P/MRP 14kDa subunit (204245_s_at), score: 0.5 SAFB2scaffold attachment factor B2 (32099_at), score: 0.49 SAMD4Asterile alpha motif domain containing 4A (212845_at), score: -0.4 SART3squamous cell carcinoma antigen recognized by T cells 3 (209127_s_at), score: 0.5 SCG5secretogranin V (7B2 protein) (203889_at), score: -0.41 SERPINB7serpin peptidase inhibitor, clade B (ovalbumin), member 7 (206421_s_at), score: -0.39 SGCDsarcoglycan, delta (35kDa dystrophin-associated glycoprotein) (213543_at), score: -0.43 SIDT2SID1 transmembrane family, member 2 (56256_at), score: -0.42 SLC16A1solute carrier family 16, member 1 (monocarboxylic acid transporter 1) (209900_s_at), score: -0.43 SLC1A1solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 (213664_at), score: -0.39 SLC4A4solute carrier family 4, sodium bicarbonate cotransporter, member 4 (203908_at), score: -0.52 SLC7A11solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 (217678_at), score: 0.53 SMEK1SMEK homolog 1, suppressor of mek1 (Dictyostelium) (220368_s_at), score: 0.6 SMG1SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) (210057_at), score: 0.52 SNAPC1small nuclear RNA activating complex, polypeptide 1, 43kDa (205443_at), score: 0.51 SNCAsynuclein, alpha (non A4 component of amyloid precursor) (204466_s_at), score: 0.7 SPARCsecreted protein, acidic, cysteine-rich (osteonectin) (212667_at), score: -0.48 SSR3signal sequence receptor, gamma (translocon-associated protein gamma) (217790_s_at), score: -0.47 SYTL2synaptotagmin-like 2 (220613_s_at), score: 0.64 TBC1D3TBC1 domain family, member 3 (209403_at), score: 0.49 TBC1D8TBC1 domain family, member 8 (with GRAM domain) (204526_s_at), score: 0.52 TCEAL2transcription elongation factor A (SII)-like 2 (211276_at), score: 0.84 TEKTEK tyrosine kinase, endothelial (206702_at), score: -0.49 TERF1telomeric repeat binding factor (NIMA-interacting) 1 (203448_s_at), score: 0.52 TIMP2TIMP metallopeptidase inhibitor 2 (203167_at), score: -0.52 TMEM204transmembrane protein 204 (219315_s_at), score: -0.47 TMEM47transmembrane protein 47 (209656_s_at), score: -0.52 TMEM51transmembrane protein 51 (218815_s_at), score: 0.5 TMOD1tropomodulin 1 (203661_s_at), score: 0.63 TNS1tensin 1 (221748_s_at), score: -0.48 TOB1transducer of ERBB2, 1 (202704_at), score: -0.46 TRIM16tripartite motif-containing 16 (204341_at), score: 0.51 TRIM8tripartite motif-containing 8 (221012_s_at), score: -0.43 TSPAN13tetraspanin 13 (217979_at), score: -0.5 TSPYL5TSPY-like 5 (213122_at), score: -0.41 TUBG2tubulin, gamma 2 (203894_at), score: -0.4 TXNRD1thioredoxin reductase 1 (201266_at), score: 0.49 TYRP1tyrosinase-related protein 1 (205694_at), score: 0.5 UAP1UDP-N-acteylglucosamine pyrophosphorylase 1 (209340_at), score: -0.53 UBE2Hubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) (221962_s_at), score: 0.51 UBL3ubiquitin-like 3 (201535_at), score: -0.56 UGT1A1UDP glucuronosyltransferase 1 family, polypeptide A1 (207126_x_at), score: 0.86 UGT1A6UDP glucuronosyltransferase 1 family, polypeptide A6 (206094_x_at), score: 0.88 UGT1A9UDP glucuronosyltransferase 1 family, polypeptide A9 (204532_x_at), score: 0.87 UROSuroporphyrinogen III synthase (203031_s_at), score: -0.41 USP18ubiquitin specific peptidase 18 (219211_at), score: 0.54 USP25ubiquitin specific peptidase 25 (220419_s_at), score: -0.41 UXS1UDP-glucuronate decarboxylase 1 (219675_s_at), score: -0.39 VWA5Avon Willebrand factor A domain containing 5A (210102_at), score: 0.56 WT1Wilms tumor 1 (206067_s_at), score: 0.63 ZNF227zinc finger protein 227 (217403_s_at), score: 0.49 ZNF281zinc finger protein 281 (218401_s_at), score: -0.42 ZNF415zinc finger protein 415 (205514_at), score: -0.45
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-3407-raw-cel-1437949854.cel | 7 | 4 | Cockayne | hgu133a | CS | eGFP |
| E-GEOD-3407-raw-cel-1437949938.cel | 8 | 4 | Cockayne | hgu133a | none | CSB |
| E-GEOD-3407-raw-cel-1437949579.cel | 2 | 4 | Cockayne | hgu133a | none | CSB |
| E-GEOD-3407-raw-cel-1437949721.cel | 5 | 4 | Cockayne | hgu133a | CS | CSB |
| E-GEOD-3407-raw-cel-1437949750.cel | 6 | 4 | Cockayne | hgu133a | CS | CSB |
