Under-expression is coded with green,
over-expression with red color.
intracellular
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
cytoskeleton
Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
actin cytoskeleton
The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
actomyosin
Any complex of actin, myosin, and accessory proteins.
organelle
Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.
organelle part
Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
cytoskeletal part
Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
all
This term is the most general term possible
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
organelle part
Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
intracellular non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
cytoskeletal part
Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice.
actomyosin
Any complex of actin, myosin, and accessory proteins.
ACTC1actin, alpha, cardiac muscle 1 (205132_at), score: 0.56 ADAM12ADAM metallopeptidase domain 12 (202952_s_at), score: -0.58 AMFRautocrine motility factor receptor (202203_s_at), score: -0.55 AP1S2adaptor-related protein complex 1, sigma 2 subunit (203300_x_at), score: 0.51 BDKRB1bradykinin receptor B1 (207510_at), score: 0.55 C11orf63chromosome 11 open reading frame 63 (220141_at), score: 0.49 C7orf58chromosome 7 open reading frame 58 (220032_at), score: 0.52 CALCOCO1calcium binding and coiled-coil domain 1 (209002_s_at), score: 0.49 CGBchorionic gonadotropin, beta polypeptide (205387_s_at), score: 0.54 CHN1chimerin (chimaerin) 1 (212624_s_at), score: 0.63 COL18A1collagen, type XVIII, alpha 1 (209081_s_at), score: 0.6 COMPcartilage oligomeric matrix protein (205713_s_at), score: 0.49 DBN1drebrin 1 (217025_s_at), score: 0.57 DDX3YDEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked (205000_at), score: -0.56 DERA2-deoxyribose-5-phosphate aldolase homolog (C. elegans) (218102_at), score: -0.58 ELL2elongation factor, RNA polymerase II, 2 (214446_at), score: 0.49 EPHA4EPH receptor A4 (206114_at), score: 0.49 F3coagulation factor III (thromboplastin, tissue factor) (204363_at), score: 0.61 FAM65Bfamily with sequence similarity 65, member B (209829_at), score: 0.57 FAM70Afamily with sequence similarity 70, member A (219895_at), score: 0.5 FGF2fibroblast growth factor 2 (basic) (204421_s_at), score: 0.54 GABRA5gamma-aminobutyric acid (GABA) A receptor, alpha 5 (206456_at), score: 0.6 GRAMD1BGRAM domain containing 1B (212906_at), score: 0.53 GRAMD3GRAM domain containing 3 (218706_s_at), score: 0.61 GRPgastrin-releasing peptide (206326_at), score: 0.6 HOXB6homeobox B6 (205366_s_at), score: 0.51 HOXC10homeobox C10 (218959_at), score: 0.49 ISLRimmunoglobulin superfamily containing leucine-rich repeat (207191_s_at), score: 0.49 ITGA3integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) (201474_s_at), score: 0.51 KRT34keratin 34 (206969_at), score: 0.49 KRTAP1-1keratin associated protein 1-1 (220976_s_at), score: 0.94 MEGF6multiple EGF-like-domains 6 (213942_at), score: 0.54 MMP1matrix metallopeptidase 1 (interstitial collagenase) (204475_at), score: -0.82 MOSPD3motile sperm domain containing 3 (219070_s_at), score: 0.49 PDE4Bphosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila) (203708_at), score: 0.55 PRELPproline/arginine-rich end leucine-rich repeat protein (204223_at), score: 0.57 PROCRprotein C receptor, endothelial (EPCR) (203650_at), score: -0.66 PRPS1phosphoribosyl pyrophosphate synthetase 1 (208447_s_at), score: 0.51 PSG5pregnancy specific beta-1-glycoprotein 5 (204830_x_at), score: 0.51 PSG9pregnancy specific beta-1-glycoprotein 9 (209594_x_at), score: 0.48 PTGER3prostaglandin E receptor 3 (subtype EP3) (213933_at), score: 0.75 RARBretinoic acid receptor, beta (205080_at), score: 0.77 RPH3ALrabphilin 3A-like (without C2 domains) (221614_s_at), score: 0.51 RPS4Y1ribosomal protein S4, Y-linked 1 (201909_at), score: -0.55 RUNX3runt-related transcription factor 3 (204198_s_at), score: 0.48 SALL1sal-like 1 (Drosophila) (206893_at), score: 0.48 SDC3syndecan 3 (202898_at), score: 0.64 SERPINB7serpin peptidase inhibitor, clade B (ovalbumin), member 7 (206421_s_at), score: 0.6 SERPING1serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 (200986_at), score: 0.61 SOCS2suppressor of cytokine signaling 2 (203373_at), score: 0.54 STMN2stathmin-like 2 (203000_at), score: 0.67 TLE4transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) (204872_at), score: 0.55 TNFRSF10Dtumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain (210654_at), score: 0.5 TNFRSF6Btumor necrosis factor receptor superfamily, member 6b, decoy (206467_x_at), score: 1 UCP2uncoupling protein 2 (mitochondrial, proton carrier) (208998_at), score: 0.65 ZMIZ1zinc finger, MIZ-type containing 1 (212124_at), score: 0.5
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-3860-raw-cel-1561690376.cel | 13 | 5 | HGPS | hgu133a | HGPS | AG11513 |
| E-GEOD-3860-raw-cel-1561690215.cel | 2 | 5 | HGPS | hgu133a | HGPS | AG11513 |
| E-GEOD-3860-raw-cel-1561690248.cel | 5 | 5 | HGPS | hgu133a | HGPS | AG11513 |
