Under-expression is coded with green,
over-expression with red color.
intracellular
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
cytoplasm
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Golgi apparatus
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
Golgi-associated vesicle
Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell.
transport vesicle
Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, or to destinations within or outside the cell.
cytoplasmic membrane-bounded vesicle
A membrane-bounded vesicle found in the cytoplasm of the cell.
coated vesicle
Small membrane-bounded organelle formed by pinching off of a coated region of membrane. Some coats are made of clathrin, whereas others are made from other proteins.
clathrin-coated vesicle
A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
trans-Golgi network transport vesicle
A vesicle that mediates transport between the trans-Golgi network and other parts of the cell.
cytoplasmic vesicle
A vesicle formed of membrane or protein, found in the cytoplasm of a cell.
vesicle
Any small, fluid-filled, spherical organelle enclosed by membrane or protein.
membrane-bounded vesicle
Any small, fluid-filled, spherical organelle enclosed by a lipid bilayer.
organelle
Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
membrane-bounded organelle
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular membrane-bounded organelle
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
organelle part
Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
Golgi apparatus part
Any constituent part of the Golgi apparatus, a compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
cytoplasmic part
Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
all
This term is the most general term possible
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
organelle part
Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
cytoplasmic vesicle
A vesicle formed of membrane or protein, found in the cytoplasm of a cell.
intracellular membrane-bounded organelle
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
cytoplasmic membrane-bounded vesicle
A membrane-bounded vesicle found in the cytoplasm of the cell.
cytoplasmic membrane-bounded vesicle
A membrane-bounded vesicle found in the cytoplasm of the cell.
cytoplasmic part
Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Golgi apparatus
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
cytoplasmic vesicle
A vesicle formed of membrane or protein, found in the cytoplasm of a cell.
Golgi apparatus part
Any constituent part of the Golgi apparatus, a compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
Golgi-associated vesicle
Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell.
Golgi apparatus part
Any constituent part of the Golgi apparatus, a compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
trans-Golgi network transport vesicle
A vesicle that mediates transport between the trans-Golgi network and other parts of the cell.
trans-Golgi network transport vesicle
A vesicle that mediates transport between the trans-Golgi network and other parts of the cell.
ADCK2aarF domain containing kinase 2 (221893_s_at), score: 0.89 ADRB2adrenergic, beta-2-, receptor, surface (206170_at), score: 0.6 ANO1anoctamin 1, calcium activated chloride channel (218804_at), score: 0.7 BAIAP3BAI1-associated protein 3 (216356_x_at), score: -0.63 BAZ2Bbromodomain adjacent to zinc finger domain, 2B (203080_s_at), score: -0.68 BCL7AB-cell CLL/lymphoma 7A (203795_s_at), score: 0.7 BHLHE41basic helix-loop-helix family, member e41 (221530_s_at), score: -0.65 BTNL3butyrophilin-like 3 (217207_s_at), score: -0.6 C8orf17chromosome 8 open reading frame 17 (208266_at), score: -0.64 C8orf4chromosome 8 open reading frame 4 (218541_s_at), score: -0.65 C9orf125chromosome 9 open reading frame 125 (213386_at), score: 0.61 CABC1chaperone, ABC1 activity of bc1 complex homolog (S. pombe) (218168_s_at), score: -0.58 CD79BCD79b molecule, immunoglobulin-associated beta (205297_s_at), score: -0.63 CHRNA6cholinergic receptor, nicotinic, alpha 6 (207568_at), score: 0.71 COL7A1collagen, type VII, alpha 1 (217312_s_at), score: 0.62 CRYBG3beta-gamma crystallin domain containing 3 (214030_at), score: -0.57 DOCK6dedicator of cytokinesis 6 (221794_at), score: 0.62 DRD5dopamine receptor D5 (208486_at), score: -0.63 EDARectodysplasin A receptor (220048_at), score: -0.62 EIF4EBP2eukaryotic translation initiation factor 4E binding protein 2 (208770_s_at), score: 0.63 ENO3enolase 3 (beta, muscle) (204483_at), score: -0.59 ETV7ets variant 7 (221680_s_at), score: -0.6 FLJ40113golgi autoantigen, golgin subfamily a-like pseudogene (213212_x_at), score: -0.59 FNDC4fibronectin type III domain containing 4 (218843_at), score: 0.64 FURINfurin (paired basic amino acid cleaving enzyme) (201945_at), score: 0.75 GFOD2glucose-fructose oxidoreductase domain containing 2 (221028_s_at), score: 0.62 GGA3golgi associated, gamma adaptin ear containing, ARF binding protein 3 (209411_s_at), score: 0.64 GP1BBglycoprotein Ib (platelet), beta polypeptide (206655_s_at), score: 0.67 HDAC4histone deacetylase 4 (204225_at), score: -0.59 HECW1HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 (215584_at), score: -0.59 KCTD7potassium channel tetramerisation domain containing 7 (213474_at), score: -0.61 KRT33Akeratin 33A (208483_x_at), score: 0.67 KRTAP1-1keratin associated protein 1-1 (220976_s_at), score: 0.61 LRDDleucine-rich repeats and death domain containing (221640_s_at), score: 0.61 MAP1Smicrotubule-associated protein 1S (218522_s_at), score: 0.69 MAP3K6mitogen-activated protein kinase kinase kinase 6 (219278_at), score: 0.68 MAPK7mitogen-activated protein kinase 7 (35617_at), score: 0.66 MATR3matrin 3 (200626_s_at), score: -0.65 MBNL2muscleblind-like 2 (Drosophila) (205018_s_at), score: -0.71 MCM9minichromosome maintenance complex component 9 (219673_at), score: -0.62 MICAL3microtubule associated monoxygenase, calponin and LIM domain containing 3 (212715_s_at), score: 0.64 MXD4MAX dimerization protein 4 (210778_s_at), score: -0.59 NPHP4nephronophthisis 4 (213471_at), score: 0.69 NR1D2nuclear receptor subfamily 1, group D, member 2 (209750_at), score: -0.77 PIP5K3phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III (213111_at), score: -0.59 PISDphosphatidylserine decarboxylase (202392_s_at), score: 0.63 PRKCDprotein kinase C, delta (202545_at), score: 1 PTPRRprotein tyrosine phosphatase, receptor type, R (210675_s_at), score: 0.67 RASSF9Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 (210335_at), score: -0.68 RIPK1receptor (TNFRSF)-interacting serine-threonine kinase 1 (209941_at), score: 0.61 RRP8ribosomal RNA processing 8, methyltransferase, homolog (yeast) (203171_s_at), score: 0.77 SPG21spastic paraplegia 21 (autosomal recessive, Mast syndrome) (215383_x_at), score: -0.57 TBPTATA box binding protein (203135_at), score: 0.69 TBX21T-box 21 (220684_at), score: -0.7 TMEM123transmembrane protein 123 (211967_at), score: -0.57 VEGFBvascular endothelial growth factor B (203683_s_at), score: 0.68 ZDHHC18zinc finger, DHHC-type containing 18 (212860_at), score: 0.93 ZFHX3zinc finger homeobox 3 (208033_s_at), score: 0.62 ZNF318zinc finger protein 318 (203521_s_at), score: 0.63 ZNF614zinc finger protein 614 (220721_at), score: -0.57
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-TABM-263-raw-cel-1515486051.cel | 21 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| 10590_WBS.CEL | 2 | 8 | WBS | hgu133plus2 | WBS | WBS 1 |
| E-TABM-263-raw-cel-1515486031.cel | 20 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486411.cel | 39 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486071.cel | 22 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
