Under-expression is coded with green,
over-expression with red color.
intracellular
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
intermediate filament
A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins.
extracellular region
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
extracellular space
That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
cytoskeleton
Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
neurofilament
A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter.
organelle
Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.
extracellular region part
Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.
organelle part
Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
cytoskeletal part
Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
intermediate filament cytoskeleton
Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell.
neurofilament cytoskeleton
Intermediate filament cytoskeletal structure that is made up of neurofilaments. Neurofilaments are specialized intermediate filaments found in neurons.
all
This term is the most general term possible
extracellular region part
Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
organelle part
Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
intracellular non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular organelle part
A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
cytoskeletal part
Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice.
intermediate filament
A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins.
neurofilament
A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter.
ACSL4acyl-CoA synthetase long-chain family member 4 (202422_s_at), score: -0.62 ADORA2Badenosine A2b receptor (205891_at), score: 0.6 AHI1Abelson helper integration site 1 (221569_at), score: -0.79 AJAP1adherens junctions associated protein 1 (206460_at), score: -0.7 ANXA10annexin A10 (210143_at), score: -0.81 AREGamphiregulin (205239_at), score: -0.7 ARNTLaryl hydrocarbon receptor nuclear translocator-like (209824_s_at), score: -0.66 BMP6bone morphogenetic protein 6 (206176_at), score: -1 C14orf45chromosome 14 open reading frame 45 (220173_at), score: -0.62 C21orf7chromosome 21 open reading frame 7 (221211_s_at), score: -0.67 C2CD2C2 calcium-dependent domain containing 2 (212875_s_at), score: -0.68 CBLBCas-Br-M (murine) ecotropic retroviral transforming sequence b (209682_at), score: -0.67 CD55CD55 molecule, decay accelerating factor for complement (Cromer blood group) (201925_s_at), score: -0.81 CDCA3cell division cycle associated 3 (221436_s_at), score: 0.6 CDKN3cyclin-dependent kinase inhibitor 3 (209714_s_at), score: 0.6 CENPFcentromere protein F, 350/400ka (mitosin) (207828_s_at), score: 0.61 CEP68centrosomal protein 68kDa (212677_s_at), score: 0.6 CLEC3BC-type lectin domain family 3, member B (205200_at), score: -0.62 COL14A1collagen, type XIV, alpha 1 (212865_s_at), score: -0.64 COL5A3collagen, type V, alpha 3 (52255_s_at), score: -0.71 CSGALNACT2chondroitin sulfate N-acetylgalactosaminyltransferase 2 (222235_s_at), score: -0.69 CXCL6chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2) (206336_at), score: -0.75 DIS3DIS3 mitotic control homolog (S. cerevisiae) (218362_s_at), score: -0.65 DNAJB9DnaJ (Hsp40) homolog, subfamily B, member 9 (202843_at), score: -0.84 EIF2AK3eukaryotic translation initiation factor 2-alpha kinase 3 (218696_at), score: -0.62 ENTPD7ectonucleoside triphosphate diphosphohydrolase 7 (220153_at), score: -0.73 ESM1endothelial cell-specific molecule 1 (208394_x_at), score: -0.81 EVI2Aecotropic viral integration site 2A (204774_at), score: 0.61 EVI2Becotropic viral integration site 2B (211742_s_at), score: 0.6 FABP3fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) (214285_at), score: -0.69 FAM64Afamily with sequence similarity 64, member A (221591_s_at), score: 0.61 FBXO31F-box protein 31 (219785_s_at), score: 0.66 FERMT1fermitin family homolog 1 (Drosophila) (218796_at), score: -0.9 FGF1fibroblast growth factor 1 (acidic) (205117_at), score: -0.69 FGF7fibroblast growth factor 7 (keratinocyte growth factor) (205782_at), score: -0.69 FOXM1forkhead box M1 (202580_x_at), score: 0.6 FUT4fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) (209892_at), score: -0.63 GKglycerol kinase (207387_s_at), score: -0.96 GK3Pglycerol kinase 3 pseudogene (215966_x_at), score: -0.92 GPM6Bglycoprotein M6B (209170_s_at), score: -0.63 GPR177G protein-coupled receptor 177 (221958_s_at), score: -0.65 GPR183G protein-coupled receptor 183 (205419_at), score: -0.83 GRB14growth factor receptor-bound protein 14 (206204_at), score: -0.79 HOMER2homer homolog 2 (Drosophila) (217080_s_at), score: -0.62 HTR2A5-hydroxytryptamine (serotonin) receptor 2A (207135_at), score: -0.9 IL33interleukin 33 (209821_at), score: -0.91 IRGQimmunity-related GTPase family, Q (64488_at), score: -0.64 ITGB3BPintegrin beta 3 binding protein (beta3-endonexin) (205176_s_at), score: 0.61 KAL1Kallmann syndrome 1 sequence (205206_at), score: -0.88 KCNG1potassium voltage-gated channel, subfamily G, member 1 (214595_at), score: -0.76 KLHL21kelch-like 21 (Drosophila) (203068_at), score: -0.65 MLXIPMLX interacting protein (202519_at), score: -0.63 MMP10matrix metallopeptidase 10 (stromelysin 2) (205680_at), score: -0.76 MREGmelanoregulin (219648_at), score: -0.71 MTMR9myotubularin related protein 9 (204837_at), score: -0.71 NCALDneurocalcin delta (211685_s_at), score: -0.75 NCAPD2non-SMC condensin I complex, subunit D2 (201774_s_at), score: 0.67 NEFLneurofilament, light polypeptide (221805_at), score: -0.68 NEFMneurofilament, medium polypeptide (205113_at), score: -0.64 NOX4NADPH oxidase 4 (219773_at), score: -0.64 NPTX1neuronal pentraxin I (204684_at), score: -0.64 PCDH9protocadherin 9 (219737_s_at), score: -0.69 PCTK2PCTAIRE protein kinase 2 (221918_at), score: -0.63 PHKA1phosphorylase kinase, alpha 1 (muscle) (205450_at), score: -0.64 PID1phosphotyrosine interaction domain containing 1 (219093_at), score: -0.68 PIGHphosphatidylinositol glycan anchor biosynthesis, class H (209625_at), score: -0.62 PIK3CDphosphoinositide-3-kinase, catalytic, delta polypeptide (203879_at), score: -0.62 PIONpigeon homolog (Drosophila) (222150_s_at), score: -0.7 PRSS3protease, serine, 3 (207463_x_at), score: -0.63 PTHLHparathyroid hormone-like hormone (211756_at), score: -0.86 PTPRBprotein tyrosine phosphatase, receptor type, B (205846_at), score: -0.61 PTTG1pituitary tumor-transforming 1 (203554_x_at), score: 0.61 PTTG3pituitary tumor-transforming 3 (208511_at), score: 0.61 RAB6CRAB6C, member RAS oncogene family (210406_s_at), score: -0.62 RFX5regulatory factor X, 5 (influences HLA class II expression) (202963_at), score: 0.74 RNF44ring finger protein 44 (203286_at), score: 0.68 RPL23ribosomal protein L23 (214744_s_at), score: -0.64 SLC38A4solute carrier family 38, member 4 (220786_s_at), score: 0.68 SLC4A7solute carrier family 4, sodium bicarbonate cotransporter, member 7 (209884_s_at), score: -0.7 SMAD3SMAD family member 3 (218284_at), score: 0.65 SPA17sperm autoantigenic protein 17 (205406_s_at), score: 0.61 ST5suppression of tumorigenicity 5 (202440_s_at), score: 0.62 TFDP2transcription factor Dp-2 (E2F dimerization partner 2) (203588_s_at), score: 0.87 TGDSTDP-glucose 4,6-dehydratase (208249_s_at), score: -0.66 TGFAtransforming growth factor, alpha (205016_at), score: -0.7 TMEM2transmembrane protein 2 (218113_at), score: -0.66 TMSB15Athymosin beta 15a (205347_s_at), score: 0.69 TRPC6transient receptor potential cation channel, subfamily C, member 6 (217287_s_at), score: -0.7 UCP2uncoupling protein 2 (mitochondrial, proton carrier) (208998_at), score: 0.76 URB1URB1 ribosome biogenesis 1 homolog (S. cerevisiae) (212996_s_at), score: -0.68 ZNF395zinc finger protein 395 (218149_s_at), score: 0.67
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-TABM-263-raw-cel-1515485811.cel | 9 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486351.cel | 36 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515485891.cel | 13 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486371.cel | 37 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515485851.cel | 11 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515485831.cel | 10 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486051.cel | 21 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486011.cel | 19 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486191.cel | 28 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
| E-TABM-263-raw-cel-1515486391.cel | 38 | 6 | Cycle | hgu133a2 | none | Cycle 1 |
