ISA

Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

• Microsoft Windows (32 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Microsoft Windows (64 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Mac OSX (Leopard)
  Download and install this file.
• Linux and Unix systems, R source package
  Download this file, save it in a temporary directory, and start R. Install the downloaded package using the install.packages() function: give the full path of the saved file and use the 'repos=NULL' argument of install.packages().

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Li P, Langer M, Vilsmaier T, Kramer M, Sciuk F, Kolbinger B, Jakob A, Rogenhofer N, Dalla-Pozza R, Thaler C, Haas NA, Oberhoffer FS
Vascular health of fathers with history of intracytoplasmic sperm injection.
Aging Male: 2024 Dec, 27(1);2360529
[PubMed:38828619] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Lita A, Sjöberg J, Păcioianu D, Siminea N, Celiku O, Dowdy T, Păun A, Gilbert MR, Noushmehr H, Petre I, Larion M
Raman-based machine learning platform reveals unique metabolic differences between IDHmut and IDHwt glioma.
Neuro Oncol: 2024 Jun 3;
[PubMed:38828478] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Myatt D, Marshall M, Ankers T, Robb C
Are relative contraindications for unicompartmental knee replacements in medial compartment osteoarthritis really contraindications?
J Orthop: 2024 Oct, 56;123-126
[PubMed:38828470] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Odong TL, Obongo I, Ariong R, Adur SE, Adumo SA, Onen DO, Rwotonen BI, Otim MH
Farmer perceptions, knowledge, and management of fall armyworm in maize production in Uganda.
Front Insect Sci: 2024, 4;1345139
[PubMed:38828261] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nayeri Fasaei B, Ashrafi Tamai I, Joghataei SM
First Isolation of Bacillus licheniformis from Bovine Mastitis in Iran.
Arch Razi Inst: 2023 Dec, 78(6);1690-1697
[PubMed:38828182] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chirebvu E, Chimbari MJ, Ngwenya BN
Knowledge and practices on malaria in Tubu village, in a malaria-endemic area in northern Botswana: implications for interventions.
Malariaworld J: 2013, 4;15
[PubMed:38828120] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chawla SK, Goyal D
Enhanced production of lactic acid from pretreated rice straw using co-cultivation of Bacillus licheniformis and Bacillus sonorenesis.
3 Biotech: 2024 Jun, 14(6);169
[PubMed:38828100] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Dolcetti V, Ruggiero S, Pellini R, Mercurio A, Vidiri A
Myopericytoma: a rare case of parapharyngeal localization.
J Radiol Case Rep: 2023 May, 17(12);8-12
[PubMed:38828029] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Novak A, Vuko-Tokić M, Žitko V, Tonkić M
Prolonged watery diarrhea and malnutrition caused by Aliarcobacter butzleri (formerly Arcobacter butzleri): the first pediatric case in Croatia and a literature review.
Infez Med: 2024, 32(2);241-247
[PubMed:38827827] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Dib LV, Barbosa ADS, Correa LL, Torres BDS, Pissinatti A, Moreira SB, Teixeira RHF, Costa ALMD, Muniz JAPC, Junglos AM, Hirano ZMB, Amendoeira MRR
Morphological and molecular characterization of parabasilids isolated from ex situ nonhuman primates and their keepers at different institutions in Brazil.
Int J Parasitol Parasites Wildl: 2024 Aug, 24;100946
[PubMed:38827824] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kasem A, Abuhammad S, Jamal N
Parents of children with autism spectrum disorder quality of life in Jordan: a comparative study.
Future Sci OA: 2024, 10(1);FSO909
[PubMed:38827808] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Fares MY, Vadhera AS, Daher M, Boufadel P, Koa J, Singh J, Abboud JA
The 100 Most Impactful Articles on Total Shoulder Arthroplasty: An Altmetric Analysis.
Clin Orthop Surg: 2024 Jun, 16(3);441-447
[PubMed:38827767] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Balpande LS, Pusdekar YV, Bhagat SS, Patil PD, Saoji AV
Influence of social media on psychological health of youth during COVID-19 pandemic.
J Family Med Prim Care: 2024 Apr, 13(4);1333-1339
[PubMed:38827727] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Kaundal A, Renjhen P, Kumari R, Jha RP, Marwaha PD, Kaur H, Kaushal S, Malik N, Gupta J
Female sexual dysfunction-knowledge, attitude, practices, and barriers encountered by medical fraternity across the country: A web-based cross-sectional study.
J Family Med Prim Care: 2024 Apr, 13(4);1284-1290
[PubMed:38827699] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Jović J, Ćorac A, Stanimirović A, Nikolić M, Stojanović M, Bukumirić Z, Ignjatović Ristić D
Using machine learning algorithms and techniques for defining the impact of affective temperament types, content search and activities on the internet on the development of problematic internet use in adolescents' population.
Front Public Health: 2024, 12;1326178
[PubMed:38827621] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Demsash AW
Spatial distribution and geographical heterogeneity factors associated with households' enrollment level in community-based health insurance.
Front Public Health: 2024, 12;1305458
[PubMed:38827604] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Maiyulan A, Matsumoto Y, Wang H, Murakami K, Toyozumi T, Otsuka R, Shiraishi T, Kinoshita K, Hu J, Iida S, Morishita H, Makiyama T, Nishioka Y, Kano M, Matsubara H
Hypoxia‑regulated exosomal miR‑185 inhibits esophageal squamous cell carcinoma progression and predicts prognosis.
Oncol Lett: 2024 Jul, 28(1);334
[PubMed:38827568] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Breslow AS, Sandil R, Brewster ME, Parent MC, Chan A, Yucel A, Bensmiller N, Glaeser E
Adonis on the Apps: Online Objectification, Self-Esteem, and Sexual Minority Men.
Psychol Men Masc: 2020 Jan, 21(1);25-35
[PubMed:38827385] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Cuamatzi-Flores J, Nava-Galicia S, Esquivel-Naranjo EU, Lopez Munguia A, Arroyo-Becerra A, Villalobos-López MA, Bibbins-Martínez M
Regulation of dye-decolorizing peroxidase gene expression in Pleurotus ostreatus grown on glycerol as the carbon source.
PeerJ: 2024, 12;e17467
[PubMed:38827301] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Falagán C, Sbaffi T, Williams GB, Bargiela R, Dew DW, Hudson-Edwards KA
Nutrient optimization in bioleaching: are we overdosing?
Front Microbiol: 2024, 15;1359991
[PubMed:38827155] [WorldCat.org: ISSN ESSN ] [DOI] ( )

González E, Vera F, Scott F, Guerrero C, Bolívar JM, Aroca G, Muñoz JÁ, Ladero M, Santos VE
Acidophilic heterotrophs: basic aspects and technological applications.
Front Microbiol: 2024, 15;1374800
[PubMed:38827148] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Shyu R, Weng C
Enabling Semantic Topic Modeling on Twitter Using MetaMap.
AMIA Jt Summits Transl Sci Proc: 2024, 2024;670-678
[PubMed:38827089] [WorldCat.org: ISSN ESSN ] ( )

Vagha JD, Wazurkar A, Madke B, Lohiya S, Wandile S, Vagha K, Javvaji CK, Naseri S
Beyond Skin Deep: A Case Report of Infantile Systemic Hyalinosis in a Six-Month-Old Infant.
Cureus: 2024 May, 16(5);e59510
[PubMed:38826988] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Khan W, Singh KB, Patil D, Banerjee A, Ahire CD, Singh V
Comparative Evaluation of Sorption and Solubility of Core Buildup Materials in Different pH Media: An In-Vitro Study.
Cureus: 2024 May, 16(5);e59432
[PubMed:38826964] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Grewal N, Hager K, Pinelo AC, Duddukunta Y, Tolla GG, Gasmelseed H
Unique Presentation of a Ubiquitous Organism: Capnocytophaga canimorsus Meningitis With Pneumocephalus.
Cureus: 2024 May, 16(5);e59529
[PubMed:38826958] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Pandey RR, Agarwal M, Wahl BP, Garg T, Jain A
Socioeconomic and Demographic Effects on SARS-CoV-2 Testing: Evidence From the State of Uttar Pradesh, India.
Cureus: 2024 May, 16(5);e59521
[PubMed:38826941] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yu H, Han E
People see what they want to see: an EEG study.
Cogn Neurodyn: 2024 Jun, 18(3);1167-1181
[PubMed:38826667] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Fan K, Guo C, Liu N, Liang X, Jin K, Wang Z, Zhu C
Visualization and Analysis of Mapping Knowledge Domain of Fluid Flow Related to Microfluidic Chip.
ACS Omega: 2024 May 28, 9(21);22801-22818
[PubMed:38826539] [WorldCat.org: ISSN ESSN ] [DOI] ( )

AlHumaid GA, Alshehri T, Alwalmani RM, Alsubaie RM, Alshehri AD, Aljoghaiman E, Gaffar B
Assessment of Oral Health Status and Pregnancy Outcomes Among Women in Saudi Arabia.
Patient Prefer Adherence: 2024, 18;1027-1038
[PubMed:38826504] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ettayebi K, Kaur G, Patil K, Dave J, Ayyar BV, Tenge VR, Neill FH, Zeng XL, Speer AL, Di Rienzi SC, Britton RA, Blutt SE, Crawford SE, Ramani S, Atmar RL, Estes MK
Advancements in Human Norovirus Cultivation in Human Intestinal Enteroids.
bioRxiv: 2024 May 24;
[PubMed:38826387] [DOI] ( e)

Shimonosono M, Morimoto M, Hirose W, Tomita Y, Matsuura N, Flashner S, Ebadi MS, Okayasu EH, Lee CY, Britton WR, Martin C, Wuertz BR, Parikh AS, Sachdeva UM, Ondrey FG, Atigadda VR, Elmets CA, Abrams JA, Muir AB, Klein-Szanto AJ, Weinberg KI, Momen-Heravi F, Nakagawa H
Modeling epithelial homeostasis and perturbation in three-dimensional human esophageal organoids.
bioRxiv: 2024 May 22;
[PubMed:38826379] [DOI] ( e)

Cook SR, Ball AG, Mohammad A, Pompano RR
Multi-organ immunity on a 3D-printed multi-tissue chip with tubing-free impeller pump.
bioRxiv: 2024 May 21;
[PubMed:38826358] [DOI] ( e)

Tavakoli N, Fong EJ, Coleman A, Huang YK, Bigger M, Doche ME, Kim S, Lenz HJ, Graham NA, Macklin P, Finley SD, Mumenthaler SM
Merging Metabolic Modeling and Imaging for Screening Therapeutic Targets in Colorectal Cancer.
bioRxiv: 2024 May 25;
[PubMed:38826317] [DOI] ( e)

Batra S, Vaquer-Alicea JI, Valdez C, Taylor SP, Manon VA, Vega AR, Kashmer OM, Kolay S, Lemoff A, Cairns NJ, White CL, Diamond MI
VCP regulates early tau seed amplification via specific cofactors.
Res Sq: 2024 May 22;
[PubMed:38826306] [DOI] ( e)

Martínez P, Silva M, Abarzúa S, Tevy MF, Jaimovich E, Constantine-Paton M, Bustos FJ, van Zundert B
Skeletal myotubes expressing ALS mutant SOD1 induce pathogenic changes, impair mitochondrial axonal transport, and trigger motoneuron death.
bioRxiv: 2024 May 26;
[PubMed:38826246] [DOI] ( e)

Jimenez IA, Stempinski PR, Dragotakes Q, Greengo SD, Sanchez Ramirez L, Casadevall A
The buoyancy of cryptococcal cells and its implications for transport and persistence of Cryptococcus in aqueous environments.
bioRxiv: 2024 May 21;
[PubMed:38826196] [DOI] ( e)

Mohamed ON, Mohamed MRM, Hassan IG, Alakkad AF, Othman A, Setouhi A, Issa AS
The Relationship of Fetuin-A with Coronary Calcification, Carotid Atherosclerosis, and Mortality Risk in Non-Dialysis Chronic Kidney Disease.
J Lipid Atheroscler: 2024 May, 13(2);194-211
[PubMed:38826181] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Goel A, Kapatia G, Parwaiz A, Gupta S
The Social Media Paradox: Unravelling the Impact of Digital Networks on Pathology.
Adv Anat Pathol: 2024 Jun 3;
[PubMed:38826140] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Attia MH, Zaghloul NM
Selfie accidents and crimes in Egypt: A comprehensive discussion of the medico-legal implications.
Med Sci Law: 2024 Jun 3;258024241257100
[PubMed:38826053] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ozde S, Akture G, Ozel MA, Yavuzyilmaz F, Arslanoglu I, Ozde C, Kayapinar O, Coskun G
Evaluation of the systemic-immune inflammation index (SII) and systemic immune-inflammation response index (SIRI) in children with type 1 diabetes mellitus and its relationship with cumulative glycemic exposure.
J Pediatr Endocrinol Metab: 2024 Jun 3;
[PubMed:38826052] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Arnoso-Martínez M, Bobowik M, González-Ortega N, Martinović B
News media consumption and support for counter-terrorism measures: the role of hatred and fear.
J Soc Psychol: 2024 Jun 2;1-16
[PubMed:38825862] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Peruvemba S, Gieng J, Chen S, Pereira Pignotti GA
Diet quality, diet motives, and nutrition literacy of vegans, vegetarians, and semi-vegetarians.
Public Health Nutr: 2024 Jun 3;1-19
[PubMed:38825725] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sims CA, Perry B, Yeung C, Tam H, Kullman J, Borchin RL, Burroughs C, Merkel PA, Clowse MEB
Exploring Reproductive Experiences With Women Enrolled in the International Vasculitis Pregnancy Registry.
J Rheumatol: 2024 Jun 1;
[PubMed:38825350] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tang B, Sun J, Xiao J, Cao Y, Huang Q, Ho CT, Kou X, Lu M
Development of piperine nanoparticles stabilized by OSA modified starch through wet-media milling technique with enhanced anti-adipogenic effect in 3T3-L1 adipocytes.
Int J Biol Macromol: 2024 May 31;132738
[PubMed:38825269] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Oliva MK, Bourke J, Kornienko D, Mattei C, Mao M, Kuanyshbek A, Ovchinnikov D, Bryson A, Karle TJ, Maljevic S, Petrou S
Standardizing a method for functional assessment of neural networks in brain organoids.
J Neurosci Methods: 2024 May 31;110178
[PubMed:38825241] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Handayani N, Aubry D, Boediono A, Bowolaksono A, Sini I, Haq NMD, Sirait B, Periastiningrum G, Mutia K, Wiweko B
Non-Invasive Pre-implantation Genetic Testing's Reliability for Aneuploidy using Cell-free DNA in Embryo Culture Media.
J Gynecol Obstet Hum Reprod: 2024 May 31;102808
[PubMed:38825167] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nofiani RISA, Ardiningsih PUJI, Rudiyansyah, Padupu DESI, Rizky, Amalia DINDAAYU, Octaviana SENLIE, Sukito AGUS, Setiyoningrum FITRI, Weisberg ALEXANDRAJ, Mahmud TAIFO
Biological activities and metabolomic profiles of extracts from the marine sediment bacterium Nocardiopsis alba DP1B cultivated in different media.
Microb Pathog: 2024 May 31;106702
[PubMed:38825090] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Panigrahi A, Benicky J, Aljuhani R, Mukherjee P, Nováková Z, Bařinka C, Goldman R
Galectin-3-binding protein inhibits extracellular heparan 6-O-endosulfatase Sulf-2.
Mol Cell Proteomics: 2024 May 31;100793
[PubMed:38825040] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kurtz M, Lezón C, Masci I, Boyer P, Brites F, Bonetto J, Bozal C, Álvarez L, Tasat D
Air pollution induces morpho-functional, biochemical and biomechanical vascular dysfunction in undernourished rats.
Food Chem Toxicol: 2024 May 31;114777
[PubMed:38824989] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao S, Li Y, Ma Y, Xie Y, Lu W, Liang C
Impact mechanism of social-related social media use on the job performance of caregivers of older adults.
Geriatr Nurs: 2024 Jun 1, 58;191-199
[PubMed:38824881] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jayamani N, Pothiawala S, Ong HB, Low Choon Seng AS, Mohamed Afif A, Arumugam Z, Sung CT, Teck FC, Liang HC
Clinical audit of the image quality and customised contrast volume using P3T contrast injection software versus standard injection protocol in CT coronary angiography.
Radiography (Lond): 2024 Jun 1, 30(4);1144-1150
[PubMed:38824873] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Du M, Zhang J, Zhi Y, Zhang J, Liu R, Zhang G, Wang J
A method for extracting corneal reflection images from multiple eye images.
Comput Biol Med: 2024 May 22, 177;108631
[PubMed:38824787] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Alqawasmeh OAM, Jiang XT, Cong L, Wu W, Leung MBW, Chung JPW, Yim HCH, Fok EKL, Chan DYL
Vertical transmission of microbiomes into embryo culture media and its association with assisted reproductive outcomes.
Reprod Biomed Online: 2024 Mar 24, 49(2);103977
[PubMed:38824761] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Xu M, Li J, Wang L, Wang Z, Wang M, Li L, Cai X, Li L, Shangguan E
Engineering Sb/Zn(4)(OH)(6)SO(4)·5H(2)O interfacial layer by in situ chemically reacting for stable Zn anode.
J Colloid Interface Sci: 2024 May 22, 671;742-750
[PubMed:38824747] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fuentes F, Contreras MJ, Arroyo-Salvo C, Cabrera P P, Silva M, Merino O, Arias ME, Felmer R
Effect of exogenous sperm capacitation inducers on stallion sperm.
Theriogenology: 2024 May 29, 226;29-38
[PubMed:38824691] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rodgers RF, Nowicki GP
#Thisis40: Body image among adult women who post selfies.
J Women Aging: 2024 Jun 2;1-10
[PubMed:38824660] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Alghadeer A, Patni AP, Li Z, Lim YC, Mathieu J, Ruohola-Baker H
Protocol for generating three-dimensional induced early ameloblasts using serum-free media and growth factors.
STAR Protoc: 2024 Jun 1, 5(2);103100
[PubMed:38824640] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Khami MR, Haghparast Ghomsheh A, Hessari H, Shati M
Knowledge of the health personnel involved in the fluoride varnish therapy programs of primary schools in Tehran, Iran.
BMC Oral Health: 2024 Jun 1, 24(1);649
[PubMed:38824605] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Manamela MG, Choung ME
Public healthcare disparities in Africa: the food production systems and its dichotomy in a South African context.
J Health Popul Nutr: 2024 Jun 1, 43(1);75
[PubMed:38824573] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bell L, Lemos E, Krimphove J, Kaiser S, Guerra-Giraldez C, Lemos M
vSEMERA: pilot project assessing health profession students' experiences in an international virtual research program.
BMC Med Educ: 2024 Jun 1, 24(1);606
[PubMed:38824559] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jayasinghe YA, Kanmodi KK, Jayasinghe RM, Jayasinghe RD
Assessment of patterns and related factors in using social media platforms to access health and oral health information among Sri Lankan adults, with special emphasis on promoting oral health awareness.
BMC Public Health: 2024 Jun 1, 24(1);1472
[PubMed:38824505] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

He C, Morris N, McNiel D, Binder R
The Evolving Standard of Care for Autoimmune Neuropsychiatric Illness.
J Am Acad Psychiatry Law: 2024 May 29;
[PubMed:38824424] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hilal S, Melnik M, Ismagilov A, Tsypkin A, Kozlov S
Determination of plasma properties in liquid jets through time-resolved experiments on third harmonic reflection dynamics.
Opt Lett: 2024 Jun 1, 49(11);2990-2993
[PubMed:38824310] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Erturk Z, Kilinc M, Okuyucu S, Ozturk Y, Pergament M, Kärtner FX, Demirbas U
Dual-wavelength synchronously mode-locked Cr:LiSAF laser with a tunable beating frequency and a central wavelength.
Opt Lett: 2024 Jun 1, 49(11);2986-2989
[PubMed:38824309] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Liu F, Wang Y, Xiong Y, Li X, Yao J, Ju H, Ren F, Zhang L, Wang H
Diagnostic value of combined ultrasound contrast and elastography for differentiating benign and malignant thyroid nodules: a meta-analysis.
Sci Rep: 2024 Jun 1, 14(1);12605
[PubMed:38824246] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

di Marco S, Gaumard M, Hage WE, Tarrada A, Fugain L, Ertan D, Hingray C
A cross-sectional survey on French psychiatrists' knowledge and perceptions of dissociative identity disorder.
Encephale: 2024 May 31;
[PubMed:38824042] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Expert Panel on Urological Imaging, Whitworth P 3rd, Courtney KG, Oto A, Allen BC, Akin O, Barker SJ, Bartel TB, DuBeau C, Gerena M, Kraft KH, Lew SQ, Mankowski Gettle L, Turkbey B, Uyeda JW, Nikolaidis P
ACR Appropriateness Criteria® Hydronephrosis on Prior Imaging-Unknown Cause.
J Am Coll Radiol: 2024 Jun, 21(6S);S144-S167
[PubMed:38823942] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Belfort E, MacMillan C, Weigle P
Peril and Promise: Teens, Tech, and America's Mental Health Crisis.
Child Adolesc Psychiatr Clin N Am: 2024 Jul, 33(3);485-498
[PubMed:38823819] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Lorente-Piera J, Manrique-Huarte R, Manrique M, Cervera-Paz FJ
Clinical profile, otologic, and auditory outcomes in patients with Down syndrome.
Acta Otorrinolaringol Esp (Engl Ed): 2024 May 30;
[PubMed:38823774] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Al-Mashaqbeh O, Alsalhi L, Salaymeh L, Dotro G, Lyu T
Treatment of pharmaceutical industry wastewater for water reuse in Jordan using hybrid constructed wetlands.
Sci Total Environ: 2024 May 30, 939;173634
[PubMed:38823717] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu J, Niederdeppe J, Tong C, Margolin D, Chunara R, Smith T, King AJ
Associations between news coverage, social media discussions, and search trends about celebrity deaths, screening, and other colorectal Cancer-related events.
Prev Med: 2024 May 30;108022
[PubMed:38823651] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Graumans W, van der Starre A, Stoter R, van Gemert GJ, Andolina C, Ramjith J, Kooij T, Bousema T, Proellochs N
AlbuMAX supplemented media induces the formation of transmission-competent P. falciparum gametocytes.
Mol Biochem Parasitol: 2024 May 30;111634
[PubMed:38823647] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Brun C, Boraud T, Gonon F
The neoliberal leaning of the neuroscience discourse when it deals with mental health and learning disorders.
Neurobiol Dis: 2024 May 30;106544
[PubMed:38823458] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hatami M, Masoudi R, Hatefi A, Alipour-Jenaghard P, Esmaeili V
The effects of MitoQ as a mitochondrial-targeted antioxidant in a plant-based extender on buck sperm quality parameters during cryopreservation.
Anim Reprod Sci: 2024 May 28, 266;107517
[PubMed:38823234] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Niyonzima YB, Wanjiru DK, Kadokawa H
Exercise-induced muscle hormone "irisin" controls luteinizing hormone and follicle-stimulating hormone secretion by bovine gonadotrophs.
Anim Reprod Sci: 2024 May 29, 266;107516
[PubMed:38823233] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Doubova SV, McClellan SP, Martinez-Vega IP, Ureña-Bogarín EL, Martínez-Montañez OG
HPV Self-Sampling in the Workplace: A Qualitative Study of Benefits, Barriers, and Opportunities for Improvement Perceived by Health Professionals and Managers.
Arch Med Res: 2024 May 31, 55(4);103009
[PubMed:38823184] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Levy LJ, Nielsen AM, Teo AR
An Intervention Program for Youths Whose Social Media Posts Suggest Increased Suicide Risk.
Psychiatr Serv: 2024 Jun 1, 75(6);612
[PubMed:38823025] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Goenka S
Comparative evaluation of six commercial adult toothpaste formulations reveals cytotoxicity and altered functions in a human oral melanocyte model: an in vitro study.
Odontology: 2024 Jun 1;
[PubMed:38822982] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Aminafshar B, Baghani HR, Mowlavi AA
Analytical parameterization of Bragg curves for proton beams in muscle, bone, and polymethylmethacrylate.
Radiol Phys Technol: 2024 Jun 1;
[PubMed:38822972] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tavoosi N, Akhavan Sepahi A, Kiarostami V, Amoozegar MA
Arsenite tolerance and removal potential of the indigenous halophilic bacterium, Halomonas elongata SEK2.
Biometals: 2024 Jun 1;
[PubMed:38822902] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wiberg GKH, Pittkowski RK, Punke S, Aalling-Frederiksen O, Jensen KMØ, Arenz M
Design and Application of a Gas Diffusion Electrode (GDE) Cell for Operando and In Situ Studies.
Chimia (Aarau): 2024 May 29, 78(5);344-348
[PubMed:38822779] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Abdala P, Müller C
Uncovering Atomic-scale Dynamics in Solid Catalysts via X-ray-based Methods.
Chimia (Aarau): 2024 May 29, 78(5);297-303
[PubMed:38822772] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gupta A, Thai A, Santa Maria PL
Epidemiology of Chronic Suppurative Otitis Media in the United States.
Ann Otol Rhinol Laryngol: 2024 Jun 1;34894241257103
[PubMed:38822732] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shaikh IN, Ahammed MM
Comparative evaluation of different pre-treatment alternatives for granular media filters treating greywater and their ranking using analytical hierarchy process.
Water Sci Technol: 2024 May, 89(10);2625-2645
[PubMed:38822604] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Adelabu I, Nantogma S, Fleischer S, Abdulmojeed M, de Maissin H, Schmidt AB, Lehmkuhl S, Rosen MS, Appelt S, Theis T, Qian C, Chekmenev EY
Toward Ultra-high-quality-factor Wireless Masing Magnetic Resonance Sensing.
Angew Chem Int Ed Engl: 2024 May 31;e202406551
[PubMed:38822492] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Terefe B, Chekole B
Prevalence of multiple micronutrient powders consumption and its determinants among 6- to 23-month-old children in East Africa: a mixed effect analysis using the recent population based cross sectional national health survey.
BMC Nutr: 2024 May 31, 10(1);79
[PubMed:38822432] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Honein-AbouHaidar G, Bou-Karroum L, Parkinson SE, Majed R, Salameh S, Daher N, Hemadi N, Fouad FM, El-Jardali F
Integrating Syrian refugees into Lebanon's healthcare system 2011-2022: a mixed-method study.
Confl Health: 2024 May 31, 18(Suppl 1);43
[PubMed:38822384] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang K, Guo B, Yao Z, Li G
Clinical T1/2 renal cell carcinoma: multiparametric dynamic contrast-enhanced MRI features-based model for the prediction of individual adverse pathology.
World J Surg Oncol: 2024 Jun 1, 22(1);145
[PubMed:38822338] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yoshimoto T, Nishi M, Okikawa S, Yoshikawa K, Tokunaga T, Nakao T, Takasu C, Kashihara H, Wada Y, Noma T, Shimada M
Blue light irradiation inhibits the M2 polarization of the cancer-associated macrophages in colon cancer.
BMC Cancer: 2024 May 31, 24(1);664
[PubMed:38822331] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen W, Zhao L, Bian R, Li Q, Zhao X, Zhang M
Compensation of small data with large filters for accurate liver vessel segmentation from contrast-enhanced CT images.
BMC Med Imaging: 2024 May 31, 24(1);129
[PubMed:38822274] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yuan SH, Wu CC, Wang YC, Chan XY, Chu HW, Yang Y, Liu HP
AGR2-mediated unconventional secretion of 14-3-3ε and α-actinin-4, responsive to ER stress and autophagy, drives chemotaxis in canine mammary tumor cells.
Cell Mol Biol Lett: 2024 May 31, 29(1);84
[PubMed:38822246] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lu X, Liu WV, Yan Y, Yang W, Liu C, Gong W, Quan G, Jiang J, Yuan L, Zha Y
Evaluation of deep learning-based reconstruction late gadolinium enhancement images for identifying patients with clinically unrecognized myocardial infarction.
BMC Med Imaging: 2024 May 31, 24(1);127
[PubMed:38822240] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Argüelles-Moyao A, Ángeles-Argáiz R, Garibay-Orijel R, Pacheco-Aguilar JR
Isolation and Enzymatic Characterization of Fungal Strains from Grapevines with Grapevine Trunk Diseases Symptoms in Central Mexico.
Curr Microbiol: 2024 May 31, 81(7);200
[PubMed:38822158] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Schwaller F
What is science? Tech heavyweights brawl over definition.
Nature: 2024 May 31;
[PubMed:38822105] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fu J, Hsiao CA
Decoding intelligence via symmetry and asymmetry.
Sci Rep: 2024 May 31, 14(1);12525
[PubMed:38822016] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Obeidnejad E, Kavoosi G, Saharkhiz MJ
Antioxidant, anti-amylase, anti-lipase, and efficiency of Satureja fatty acid on the anti-inflammatory parameters in lipopolysaccharide-stimulated macrophage through Nrf2/NF-kB/NADH oxidase pathway.
Sci Rep: 2024 May 31, 14(1);12490
[PubMed:38821994] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mao X, Gu H, Kim D, Kimura Y, Wang N, Xu E, Kumbhar R, Ming X, Wang H, Chen C, Zhang S, Jia C, Liu Y, Bian H, Karuppagounder SS, Akkentli F, Chen Q, Jia L, Hwang H, Lee SH, Ke X, Chang M, Li A, Yang J, Rastegar C, Sriparna M, Ge P, Brahmachari S, Kim S, Zhang S, Shimoda Y, Saar M, Liu H, Kweon SH, Ying M, Workman CJ, Vignali DAA, Muller UC, Liu C, Ko HS, Dawson VL, Dawson TM
Aplp1 interacts with Lag3 to facilitate transmission of pathologic α-synuclein.
Nat Commun: 2024 May 31, 15(1);4663
[PubMed:38821932] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Agostoni C, Boccia S, Graffigna G, Slavin J, Abodi M, Szajewska H
What should I eat today? Evidence, guidelines, dietary patterns and consumer's behavior.
Eur J Intern Med: 2024 May 30;
[PubMed:38821785] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tsujimoto M, Moon S, Ito Y
Effect of conditioned media on the angiogenic activity of mesenchymal stem cells.
J Biosci Bioeng: 2024 May 30;
[PubMed:38821758] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wu C, Huang F, Wei L, Yi S, Wu Y, Huang Z, Yi M, Li F
Do the residual metals in multiple environmental media surrounding mines pose ecological and health risks? A case of an abandoned mining area in central south China.
Environ Res: 2024 May 29, 257;119279
[PubMed:38821461] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

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1. Kutalik2008NB pmid=18464786 // PDF
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