ISA

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An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Todtenhaupt P, Kuipers TB, Dijkstra KL, Voortman LM, Franken LA, Spekman JA, Jonkman TH, Groene SG, Roest AA, Haak MC, Verweij ET, van Pel M, Lopriore E, Heijmans BT, van der Meeren LE
Twisting the theory on the origin of human umbilical cord coiling featuring monozygotic twins.
Life Sci Alliance: 2024 Aug, 7(8);
[PubMed:38830769] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chen D, Zhang H, Zhao G, Zhu Z, Yang J, He J, Li J, Yu Z, Zhu Z
Investigating the Corrosion Resistance of Different SiC Crystal Types: From Energy Sectors to Advanced Applications.
Langmuir: 2024 Jun 3;
[PubMed:38830755] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Arnold S, Spalding T, Parsons H, Beard D, Bradley H, Crisford P, Ellard DR, Ferreira M, Getgood A, Guck J, Haque A, Khan I, Mason J, Milroy B, Myers P, Parker D, Price AJ, Smith A, Smith NA, Smith T, Stewart K, Underwood M, Verdonk P, Metcalfe A
Meniscal Transplant surgery or Optimised Rehabilitation full randomised trial (MeTeOR2): a study protocol.
BMJ Open: 2024 Jun 3, 14(6);e085125
[PubMed:38830746] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Abou Deb G, Hamdallah H
Cardiovascular risk and physical activity in Syrians living in England compared with the population of North West England: a cross-sectional study.
BMJ Open: 2024 Jun 3, 14(6);e084899
[PubMed:38830737] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Muraca GM, Kramer JLK, Butwick AJ
Sterile water injections for back pain in labour.
BMJ: 2024 Jun 3, 385;q1187
[PubMed:38830694] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Elwenspoek M, Banks J, Desale PP, Watson J, Whiting P
Exploring factors influencing quality of life variability among individuals with coeliac disease: an online survey.
BMJ Open Gastroenterol: 2024 Jun 2, 11(1);
[PubMed:38830687] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Şener Ş, Göger S
Do digital health information searches of individuals with chronic diseases affect health literacy and patient empowerment? A path analysis.
Saudi Med J: 2024 Jun, 45(6);617-625
[PubMed:38830649] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Yang Y, Zhang X, Wu K, Zhou C, Huang X
A novel endoscopic approach for the treatment of hiatal hernia combined with refractory gastroesophageal reflux disease.
Endoscopy: 2024 Dec, 56(S 01);E441-E442
[PubMed:38830611] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Leland NE, Brown C, Shore AD, Cary MP Jr,, Reed K, Saliba D
Efforts to Support the Mental Health and Well-being of Nursing Home Staff: Insights From Leaders.
J Am Med Dir Assoc: 2024 May 31;105051
[PubMed:38830597] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu S, Lin L, Han B, Ma J, Pritchard HW, Hu X, Deng M, Chen H
Cryopreservation-enhanced differentiation capacity of embryogenic cultures of Castanea mollissima.
Cryobiology: 2024 Jun 1;104915
[PubMed:38830567] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Korkmaz E, Ergon MC
Investigation of Antifungal Susceptibility of Aspergillus Species Isolated from Systemic Clinical Specimens by Different Methods.
Indian J Med Microbiol: 2024 Jun 1;100642
[PubMed:38830536] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Umeh OR, Ophori DU, Ibo EM, Eke CI, Oyen TP
Groundwater systems under siege: The silent invasion of microplastics and cock-tails worldwide.
Environ Pollut: 2024 Jun 1;124305
[PubMed:38830527] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lawrence S, Nehaniv CL
Aggregate Boid behaviour to aid in artificial autopoietic organization.
Biosystems: 2024 Jun 1;105245
[PubMed:38830483] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li Z, Jia J, Wang M, Gu M, Tu S
Particle filter for fatigue crack growth prediction using SH0 wave on-line monitoring.
Ultrasonics: 2024 May 26, 142;107355
[PubMed:38830325] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tomczyk Ł
Digital competence among pre-service teachers: A global perspective on curriculum change as viewed by experts from 33 countries.
Eval Program Plann: 2024 May 31, 105;102449
[PubMed:38830317] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kotsia D, Sympikou T, Topi E, Pappa F, Matsoukas C, Fountoulakis MS
Use of recycled construction and demolition waste as substrate in constructed wetlands for the wastewater treatment of cheese production.
J Environ Manage: 2024 Jun 2, 362;121324
[PubMed:38830284] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Walls R, Nageswaran P, Cowell A, Sehgal T, White T, McVeigh J, Staykov S, Basett P, Mitelpunkt D, Sam AH
Virtual reality as an engaging and enjoyable method for delivering emergency clinical simulation training: a prospective, interventional study of medical undergraduates.
BMC Med: 2024 Jun 3, 22(1);222
[PubMed:38831293] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Landers A, Brown H, Al Ruheili J, Russell K, McKenzie C, Agar MR, Yenson VM, Clarke K, Windsor J
Patient-reported use of pancreatic enzyme replacement treatment (PERT) in pancreatic cancer in New Zealand and Australia: a cross-sectional survey study.
Support Care Cancer: 2024 Jun 3, 32(6);402
[PubMed:38831230] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kersche G, Liblik D, Hétu MF, Matangi MF, Mantella L, Pal RS, Blaha MJ, Johri AM
The association of carotid plaque burden and composition and the coronary artery calcium score in intermediate cardiovascular risk patients.
Int J Cardiovasc Imaging: 2024 Jun 4;
[PubMed:38831220] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hellinga JR, Krücken J, Schulenburg H, von Samson-Himmelstjerna G
Use of Viscous medium to study anthelmintic drug action in Caenorhabditis elegans.
Sci Rep: 2024 Jun 4, 14(1);12756
[PubMed:38830930] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kawasaki R, Miura Y, Kono N, Fujita S, Yamana K, Ikeda A
Boron agent delivery platforms based on natural products for boron neutron capture therapy.
ChemMedChem: 2024 Jun 3;e202400323
[PubMed:38830821] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Huang Y, Luan S, Wu B, Li Y, Wu J, Chen W, Hertwig R
Impulsivity is a stable, measurable, and predictive psychological trait.
Proc Natl Acad Sci U S A: 2024 Jun 11, 121(24);e2321758121
[PubMed:38830093] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Martin S, Dill J, Demeritte D, Geressu H, Dahal R, Kirkland C, Hunt S, Parikh R
A Scoping Review of Health Equity Interventions in Governmental Public Health.
J Public Health Manag Pract: 2024 Jun 3;
[PubMed:38830006] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Leach AJ, Wilson N, Arrowsmith B, Beissbarth J, Mulholland K, Santosham M, Torzillo PJ, McIntyre P, Smith-Vaughan H, Skull SA, Oguoma VM, Chatfield MD, Lehmann D, Brennan-Jones CG, Binks MJ, Licciardi PV, Andrews RM, Snelling T, Krause V, Carapetis J, Chang AB, Morris PS
Hearing loss in Australian First Nations children at 6-monthly assessments from age 12 to 36 months: Secondary outcomes from randomised controlled trials of novel pneumococcal conjugate vaccine schedules.
PLoS Med: 2024 Jun, 21(6);e1004375
[PubMed:38829821] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ji H, Zhao X, Chen X, Fang H, Gao H, Wei G, Zhang M, Kuang H, Yang B, Cai X, Su Y, Piao C, Zhao S, Li L, Sun W, Xu T, Xu Q, Fan Y, Ye J, Yao C, Shang M, Song G, Chen L, Zheng Q, Xiao X, Yan L, Lian F, Tong X, Jia Z, FOCUS Trial Committees and Investigators
Jinlida for Diabetes Prevention in Impaired Glucose Tolerance and Multiple Metabolic Abnormalities: The FOCUS Randomized Clinical Trial.
JAMA Intern Med: 2024 Jun 3;
[PubMed:38829648] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Al-Younis ZK, Almajidi YQ, Mansouri S, Ahmad I, Turdialiyev U, O Alsaab H, F Ramadan M, Joshi SK, Alawadi AH, Alsaalamy A
Label-Free Field Effect Transistors (FETs) for Fabrication of Point-of-Care (POC) Biomedical Detection Probes.
Crit Rev Anal Chem: 2024 Jun 3;1-22
[PubMed:38829552] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nagata JM, Stuart E, Hur JO, Panchal S, Low P, Chaphekar AV, Ganson KT, Lavender JM
Eating Disorders in Sexual and Gender Minority Adolescents.
Curr Psychiatry Rep: 2024 Jun 3;
[PubMed:38829456] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tuck AB, Thompson RJ
Types of social media use are differentially associated with trait and momentary affect.
Emotion: 2024 Jun 3;
[PubMed:38829351] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu X, Liu Y, Gibson LD, Ge M, Olds D, Leshchev D, Bai J, Plonka AM, Halstenberg P, Zhong H, Ghose S, Lin CH, Zheng X, Xiao X, Lee WK, Dai S, Samolyuk GD, Bryantsev VS, Frenkel AI, Chen-Wiegart YK
Exploring Cr and molten salt interfacial interactions for molten salt applications.
Phys Chem Chem Phys: 2024 Jun 3;
[PubMed:38829308] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Du-Harpur X
The Social Media Impact Factor.
J Invest Dermatol: 2024 Jun 3;
[PubMed:38829297] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Henderson WM, Evich MG, Washington JW, Ward TT, Schumacher BA, Zimmerman JH, Kim YD, Weber EJ, Williams AC, Smeltz MG, Glinski DA
Analysis of Legacy and Novel Neutral Per- and Polyfluoroalkyl Substances in Soils from an Industrial Manufacturing Facility.
Environ Sci Technol: 2024 Jun 3;
[PubMed:38829283] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Oláh ZC, Papp GJ, Sas A, Oláh B, Czabajszki M, Demeter B
[Az arteria meningea media embolisatio szerepe a krónikus subduralis haematoma kezelési algoritmusában, legújabb evidenciák és saját tapasztalataink].
Ideggyogy Sz: 2024 May 30, 77(5-6);201-206
[PubMed:38829247] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Mauro F, Natale CF, Panzetta V, Netti PA
Development of an Azobenzene-Based Cell Culture Photoresponsive Platform for In Situ Modulation of Surface Topography in Wet Environments.
ACS Appl Mater Interfaces: 2024 Jun 3;
[PubMed:38829198] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Itäinen-Strömberg S, Lehto M, Halminen O, Putaala J, Haukka J, Lehtonen O, Teppo K, Mustonen P, Linna M, Hartikainen J, Airaksinen KEJ, Aro AL
Thromboembolic and bleeding complications after elective cardioversion of atrial fibrillation: a nationwide cohort study.
Europace: 2024 Jun 3, 26(6);
[PubMed:38829189] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Huang Z, Li Z, Zhong X, Yang Q, Wei L, Li D, Li H
Endoscopic Bilateral Nipple-sparing Mastectomy via a Single Axillary Incision with Immediate Pre-pectoral Implant-based Breast Reconstruction.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829141] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Simpson D, Morrone CD, Wear D, Gutierrez J, Yu WH
A Visual Approach for Inducing Dolichoectasia in Mice to Model Large Vessel-Mediated Cerebrovascular Dysfunction.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829135] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Shen J, Hu C, Li Y, Shang X, Deng Y, Guo J, Zhang L, Wang J, Zhang W
The Antihypertensive Effects and Mechanisms of Huotan Jiedu Tongluo Decoction in Rats with H-Type Hypertension.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829134] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jenkins DP, Turner-Ivey B, Fromm Longo J, Carroll SL
Identifying, Diagnosing, and Grading Malignant Peripheral Nerve Sheath Tumors in Genetically Engineered Mouse Models.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829133] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Montanari A, Wittamer V
Live Imaging and Characterization of Microglia Dynamics in the Zebrafish Embryo.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829132] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Fiedler C, Liu Y, Ibáñez M
Solution-Processed, Surface-Engineered, Polycrystalline CdSe-SnSe Exhibiting Low Thermal Conductivity.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829127] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Xu S, Chen M, Chen G, Luo S, Xue W, Liu X, Wang J, Wei P
CRISPR-Based Modular Assembly for High-Throughput Construction of a UAS-cDNA/ORF Plasmid Library.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829124] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Anil S, Thomas NG, Chalisserry EP, Dalvi YB, Ramadoss R, Vellappally S
Isolation, Culture, and Characterization of Dental Pulp Stem Cells from Human Deciduous and Permanent Teeth.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829121] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bertuzzi S, Poveda A, Ardá A, Gimeno A, Jiménez-Barbero J
Disentangling Glycan-Protein Interactions: Nuclear Magnetic Resonance (NMR) to the Rescue.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829120] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Taylor E, Airaksinen M, Gallen A, Immonen T, Ilén E, Palsa T, Haataja LM, Vanhatalo S
Quantified Assessment of Infant's Gross Motor Abilities Using a Multisensor Wearable.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829118] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ahmad Musri N, Putthisigamany Y, Chelvanathan P, Ahmad Ludin N, Md Yatim N, Syafiq U
Fabrication of Bi2Te3 and Sb2Te3 Thermoelectric Thin Films using Radio Frequency Magnetron Sputtering Technique.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829117] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

de Araújo Silva DN, Casarin M, Monajemzadeh S, Menezes da Silveira T, Lubben J, Bezerra B, Pirih FQ
Experimental Model of Ligature-Induced Peri-Implantitis in Mice.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829116] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yang M, Cui L, Liu X
A Seamless Cloning Approach for Porcine Reproductive and Respiratory Syndrome Virus Expression Vector Construction.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829112] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Majd H, Richter MN, Samuel RM, Kalantari A, Ramirez JT, Fattahi F
Differentiation of Enteric Nervous System Lineages from Human Pluripotent Stem Cells.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829111] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dhiman S, Hickey RE, Thorn KE, Moss HG, McKinnon ET, Adisetiyo V, Ades-Aron B, Jensen JH, Benitez A
PyDesigner v1.0: A Pythonic Implementation of the DESIGNER Pipeline for Diffusion Magnetic Resonance Imaging.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829110] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Martin GE, Chan A, Brossier NM
Concurrent Collection of Fetal Murine Brain and Serum to Assess Effects of Maternal Diet on Nutrition and Neurodevelopment in Neurofibromatosis Type 1.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829109] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Liu H, Yang H, Liu S, Li S, Yang W, Ayesha A, Tan X, Jiang C, Liu Y, Xie L
Biomarker Identification for Gender Specificity of Alzheimer's Disease Based on the Glial Transcriptome Profiles.
J Vis Exp: 2024 May 20, (207);
[PubMed:38829108] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Romero D, Chandler RJ
Systemic Treatment for Postnatal, Juvenile, and Runted Adult Mice by Retrobulbar Sinus Injection.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829107] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tang J, Zhang B, Tang C, Wang X, Hua M, Zhou Y, Shi H, Zhang T
Monitoring Blood Glucose in Mouse Offspring after Intracytoplasmic sperm injection - Embryo Transfer.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829106] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jiren Z, Xue J, Yufei S, Huiwen L, Jian Y, Shilei Q, Dongman Z, Lei X, Mingming J, Tian W, Pinyuan Z
A Rat Model of Middle Cerebral Artery Occlusion/Reperfusion without Damaging the Anatomical Structure of Cerebral Vessels.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829046] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Segers I, Mateizel I, Wouters K, Van Moer E, Anckaert E, De Munck N, De Vos M
Ovarian Tissue Oocyte-In Vitro Maturation for Fertility Preservation.
J Vis Exp: 2024 May 17, (207);
[PubMed:38829044] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Abu Khait A, Menger A, Hamdan-Mansour AM, Aldalaykeh M, Hamaideh SH, Al-Mrayat YD, Nusair H
The Association Between Coping Strategies and Psychological and Emotional Distress Among Health Care Providers Caring for Autistic Children in Jordan.
West J Nurs Res: 2024 Jun 3;1939459241254782
[PubMed:38829033] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Strieder AP, Ayala Aguirre PE, Lotto M, Marchini Oliveira T, Cruvinel T
A digital study on predictive factors for Instagram users' engagement with amber necklace-related posts.
Eur J Paediatr Dent: 2024 Jun 1, 25;1
[PubMed:38828987] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Demes S, Bop CT, Ben Khalifa M, Lique F
First close-coupling study of the excitation of a large cyclic molecule: collision of c-C(5)H(6) with He.
Phys Chem Chem Phys: 2024 Jun 3;
[PubMed:38828888] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Stephan AP, Hauc SC, Marks VA, Bercik R, Rickey L
TikTok misinformation and user engagement in female pelvic floor conditions.
Neurourol Urodyn: 2024 Jun 3;
[PubMed:38828831] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lei YK, Yagi K, Sugita Y
Learning QM/MM potential using equivariant multiscale model.
J Chem Phys: 2024 Jun 7, 160(21);
[PubMed:38828815] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Steppan CG, Simon L, Blackwood C, Emrick T
Sulfobetaine Zwitterions with Embedded Fluorocarbons: Synthesis and Interfacial Properties.
ACS Macro Lett: 2024 Jun 3;761-767
[PubMed:38828757] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li P, Langer M, Vilsmaier T, Kramer M, Sciuk F, Kolbinger B, Jakob A, Rogenhofer N, Dalla-Pozza R, Thaler C, Haas NA, Oberhoffer FS
Vascular health of fathers with history of intracytoplasmic sperm injection.
Aging Male: 2024 Dec, 27(1);2360529
[PubMed:38828619] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Lita A, Sjöberg J, Păcioianu D, Siminea N, Celiku O, Dowdy T, Păun A, Gilbert MR, Noushmehr H, Petre I, Larion M
Raman-based machine learning platform reveals unique metabolic differences between IDHmut and IDHwt glioma.
Neuro Oncol: 2024 Jun 3;
[PubMed:38828478] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Myatt D, Marshall M, Ankers T, Robb C
Are relative contraindications for unicompartmental knee replacements in medial compartment osteoarthritis really contraindications?
J Orthop: 2024 Oct, 56;123-126
[PubMed:38828470] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Odong TL, Obongo I, Ariong R, Adur SE, Adumo SA, Onen DO, Rwotonen BI, Otim MH
Farmer perceptions, knowledge, and management of fall armyworm in maize production in Uganda.
Front Insect Sci: 2024, 4;1345139
[PubMed:38828261] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nayeri Fasaei B, Ashrafi Tamai I, Joghataei SM
First Isolation of Bacillus licheniformis from Bovine Mastitis in Iran.
Arch Razi Inst: 2023 Dec, 78(6);1690-1697
[PubMed:38828182] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chawla SK, Goyal D
Enhanced production of lactic acid from pretreated rice straw using co-cultivation of Bacillus licheniformis and Bacillus sonorenesis.
3 Biotech: 2024 Jun, 14(6);169
[PubMed:38828100] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Dolcetti V, Ruggiero S, Pellini R, Mercurio A, Vidiri A
Myopericytoma: a rare case of parapharyngeal localization.
J Radiol Case Rep: 2023 May, 17(12);8-12
[PubMed:38828029] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Novak A, Vuko-Tokić M, Žitko V, Tonkić M
Prolonged watery diarrhea and malnutrition caused by Aliarcobacter butzleri (formerly Arcobacter butzleri): the first pediatric case in Croatia and a literature review.
Infez Med: 2024, 32(2);241-247
[PubMed:38827827] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Dib LV, Barbosa ADS, Correa LL, Torres BDS, Pissinatti A, Moreira SB, Teixeira RHF, Costa ALMD, Muniz JAPC, Junglos AM, Hirano ZMB, Amendoeira MRR
Morphological and molecular characterization of parabasilids isolated from ex situ nonhuman primates and their keepers at different institutions in Brazil.
Int J Parasitol Parasites Wildl: 2024 Aug, 24;100946
[PubMed:38827824] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kasem A, Abuhammad S, Jamal N
Parents of children with autism spectrum disorder quality of life in Jordan: a comparative study.
Future Sci OA: 2024, 10(1);FSO909
[PubMed:38827808] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Fares MY, Vadhera AS, Daher M, Boufadel P, Koa J, Singh J, Abboud JA
The 100 Most Impactful Articles on Total Shoulder Arthroplasty: An Altmetric Analysis.
Clin Orthop Surg: 2024 Jun, 16(3);441-447
[PubMed:38827767] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Balpande LS, Pusdekar YV, Bhagat SS, Patil PD, Saoji AV
Influence of social media on psychological health of youth during COVID-19 pandemic.
J Family Med Prim Care: 2024 Apr, 13(4);1333-1339
[PubMed:38827727] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Kaundal A, Renjhen P, Kumari R, Jha RP, Marwaha PD, Kaur H, Kaushal S, Malik N, Gupta J
Female sexual dysfunction-knowledge, attitude, practices, and barriers encountered by medical fraternity across the country: A web-based cross-sectional study.
J Family Med Prim Care: 2024 Apr, 13(4);1284-1290
[PubMed:38827699] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Jović J, Ćorac A, Stanimirović A, Nikolić M, Stojanović M, Bukumirić Z, Ignjatović Ristić D
Using machine learning algorithms and techniques for defining the impact of affective temperament types, content search and activities on the internet on the development of problematic internet use in adolescents' population.
Front Public Health: 2024, 12;1326178
[PubMed:38827621] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Demsash AW
Spatial distribution and geographical heterogeneity factors associated with households' enrollment level in community-based health insurance.
Front Public Health: 2024, 12;1305458
[PubMed:38827604] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Maiyulan A, Matsumoto Y, Wang H, Murakami K, Toyozumi T, Otsuka R, Shiraishi T, Kinoshita K, Hu J, Iida S, Morishita H, Makiyama T, Nishioka Y, Kano M, Matsubara H
Hypoxia‑regulated exosomal miR‑185 inhibits esophageal squamous cell carcinoma progression and predicts prognosis.
Oncol Lett: 2024 Jul, 28(1);334
[PubMed:38827568] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cuamatzi-Flores J, Nava-Galicia S, Esquivel-Naranjo EU, Lopez Munguia A, Arroyo-Becerra A, Villalobos-López MA, Bibbins-Martínez M
Regulation of dye-decolorizing peroxidase gene expression in Pleurotus ostreatus grown on glycerol as the carbon source.
PeerJ: 2024, 12;e17467
[PubMed:38827301] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Falagán C, Sbaffi T, Williams GB, Bargiela R, Dew DW, Hudson-Edwards KA
Nutrient optimization in bioleaching: are we overdosing?
Front Microbiol: 2024, 15;1359991
[PubMed:38827155] [WorldCat.org: ISSN ESSN ] [DOI] ( )

González E, Vera F, Scott F, Guerrero C, Bolívar JM, Aroca G, Muñoz JÁ, Ladero M, Santos VE
Acidophilic heterotrophs: basic aspects and technological applications.
Front Microbiol: 2024, 15;1374800
[PubMed:38827148] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Shyu R, Weng C
Enabling Semantic Topic Modeling on Twitter Using MetaMap.
AMIA Jt Summits Transl Sci Proc: 2024, 2024;670-678
[PubMed:38827089] [WorldCat.org: ISSN ESSN ] ( )

Vagha JD, Wazurkar A, Madke B, Lohiya S, Wandile S, Vagha K, Javvaji CK, Naseri S
Beyond Skin Deep: A Case Report of Infantile Systemic Hyalinosis in a Six-Month-Old Infant.
Cureus: 2024 May, 16(5);e59510
[PubMed:38826988] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Khan W, Singh KB, Patil D, Banerjee A, Ahire CD, Singh V
Comparative Evaluation of Sorption and Solubility of Core Buildup Materials in Different pH Media: An In-Vitro Study.
Cureus: 2024 May, 16(5);e59432
[PubMed:38826964] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Grewal N, Hager K, Pinelo AC, Duddukunta Y, Tolla GG, Gasmelseed H
Unique Presentation of a Ubiquitous Organism: Capnocytophaga canimorsus Meningitis With Pneumocephalus.
Cureus: 2024 May, 16(5);e59529
[PubMed:38826958] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Pandey RR, Agarwal M, Wahl BP, Garg T, Jain A
Socioeconomic and Demographic Effects on SARS-CoV-2 Testing: Evidence From the State of Uttar Pradesh, India.
Cureus: 2024 May, 16(5);e59521
[PubMed:38826941] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yu H, Han E
People see what they want to see: an EEG study.
Cogn Neurodyn: 2024 Jun, 18(3);1167-1181
[PubMed:38826667] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Fan K, Guo C, Liu N, Liang X, Jin K, Wang Z, Zhu C
Visualization and Analysis of Mapping Knowledge Domain of Fluid Flow Related to Microfluidic Chip.
ACS Omega: 2024 May 28, 9(21);22801-22818
[PubMed:38826539] [WorldCat.org: ISSN ESSN ] [DOI] ( )

AlHumaid GA, Alshehri T, Alwalmani RM, Alsubaie RM, Alshehri AD, Aljoghaiman E, Gaffar B
Assessment of Oral Health Status and Pregnancy Outcomes Among Women in Saudi Arabia.
Patient Prefer Adherence: 2024, 18;1027-1038
[PubMed:38826504] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ettayebi K, Kaur G, Patil K, Dave J, Ayyar BV, Tenge VR, Neill FH, Zeng XL, Speer AL, Di Rienzi SC, Britton RA, Blutt SE, Crawford SE, Ramani S, Atmar RL, Estes MK
Advancements in Human Norovirus Cultivation in Human Intestinal Enteroids.
bioRxiv: 2024 May 24;
[PubMed:38826387] [DOI] ( e)

Shimonosono M, Morimoto M, Hirose W, Tomita Y, Matsuura N, Flashner S, Ebadi MS, Okayasu EH, Lee CY, Britton WR, Martin C, Wuertz BR, Parikh AS, Sachdeva UM, Ondrey FG, Atigadda VR, Elmets CA, Abrams JA, Muir AB, Klein-Szanto AJ, Weinberg KI, Momen-Heravi F, Nakagawa H
Modeling epithelial homeostasis and perturbation in three-dimensional human esophageal organoids.
bioRxiv: 2024 May 22;
[PubMed:38826379] [DOI] ( e)

Cook SR, Ball AG, Mohammad A, Pompano RR
Multi-organ immunity on a 3D-printed multi-tissue chip with tubing-free impeller pump.
bioRxiv: 2024 May 21;
[PubMed:38826358] [DOI] ( e)

Tavakoli N, Fong EJ, Coleman A, Huang YK, Bigger M, Doche ME, Kim S, Lenz HJ, Graham NA, Macklin P, Finley SD, Mumenthaler SM
Merging Metabolic Modeling and Imaging for Screening Therapeutic Targets in Colorectal Cancer.
bioRxiv: 2024 May 25;
[PubMed:38826317] [DOI] ( e)

Batra S, Vaquer-Alicea JI, Valdez C, Taylor SP, Manon VA, Vega AR, Kashmer OM, Kolay S, Lemoff A, Cairns NJ, White CL, Diamond MI
VCP regulates early tau seed amplification via specific cofactors.
Res Sq: 2024 May 22;
[PubMed:38826306] [DOI] ( e)

Martínez P, Silva M, Abarzúa S, Tevy MF, Jaimovich E, Constantine-Paton M, Bustos FJ, van Zundert B
Skeletal myotubes expressing ALS mutant SOD1 induce pathogenic changes, impair mitochondrial axonal transport, and trigger motoneuron death.
bioRxiv: 2024 May 26;
[PubMed:38826246] [DOI] ( e)

Jimenez IA, Stempinski PR, Dragotakes Q, Greengo SD, Sanchez Ramirez L, Casadevall A
The buoyancy of cryptococcal cells and its implications for transport and persistence of Cryptococcus in aqueous environments.
bioRxiv: 2024 May 21;
[PubMed:38826196] [DOI] ( e)

Mohamed ON, Mohamed MRM, Hassan IG, Alakkad AF, Othman A, Setouhi A, Issa AS
The Relationship of Fetuin-A with Coronary Calcification, Carotid Atherosclerosis, and Mortality Risk in Non-Dialysis Chronic Kidney Disease.
J Lipid Atheroscler: 2024 May, 13(2);194-211
[PubMed:38826181] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Goel A, Kapatia G, Parwaiz A, Gupta S
The Social Media Paradox: Unravelling the Impact of Digital Networks on Pathology.
Adv Anat Pathol: 2024 Jun 3;
[PubMed:38826140] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Attia MH, Zaghloul NM
Selfie accidents and crimes in Egypt: A comprehensive discussion of the medico-legal implications.
Med Sci Law: 2024 Jun 3;258024241257100
[PubMed:38826053] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ozde S, Akture G, Ozel MA, Yavuzyilmaz F, Arslanoglu I, Ozde C, Kayapinar O, Coskun G
Evaluation of the systemic-immune inflammation index (SII) and systemic immune-inflammation response index (SIRI) in children with type 1 diabetes mellitus and its relationship with cumulative glycemic exposure.
J Pediatr Endocrinol Metab: 2024 Jun 3;
[PubMed:38826052] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Arnoso-Martínez M, Bobowik M, González-Ortega N, Martinović B
News media consumption and support for counter-terrorism measures: the role of hatred and fear.
J Soc Psychol: 2024 Jun 2;1-16
[PubMed:38825862] [WorldCat.org: ISSN ESSN ] [DOI] ( a)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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