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Revision as of 11:32, 1 February 2016



An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Hu L, Wyatt LC, Mohsin F, Lim S, Zanowiak J, Mammen S, Hussain S, Ali SH, Onakomaiya D, Belli HM, Aifah A, Islam NS
Characterizing Technology Use and Preferences for Health Communication in South Asian Immigrants With Prediabetes or Diabetes: Cross-Sectional Descriptive Study.
JMIR Form Res: 2024 Apr 26, 8;e52687
[PubMed:38669062] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Spasova N, Somleva D, Krastev B, Ilieva R, Borizanova A, Svinarov D, Kinova E, Goudev A
Association of the trimethylamine N-oxide with cardiovascular risk and vascular alterations in middle-aged patients with risk factors for cardiovascular diseases.
Biosci Rep: 2024 Apr 26;
[PubMed:38669041] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Suran M, Bucher K
False Health Claims Abound, but Physicians Are Still the Most Trusted Source for Health Information.
JAMA: 2024 Apr 26;
[PubMed:38669040] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Weiniger CF, Brogly N, Lustig A, Van Den Bosch OFC, Kranke P, Lucas N, Morau E, Eklund K, Gunaydin B, Romero CS, Afshari A
Anaesthesia praCtice for Caesarean dElivery Snapshot Study (ACCESS): Protocol and baseline characteristics of registered centres.
Acta Anaesthesiol Scand: 2024 Apr 26;
[PubMed:38669012] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Farfour E, Vasse M, Vallée A
Oligella spp.: A systematic review on an uncommon urinary pathogen.
Eur J Clin Microbiol Infect Dis: 2024 Apr 26;
[PubMed:38668878] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Khakpour M, Mohsenzadeh M, Salari A
Feasibility of lactiplantibacillus plantarum postbiotics production in challenging media by different techniques.
AMB Express: 2024 Apr 26, 14(1);47
[PubMed:38668839] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ates I, Stuart C, Rathbone T, Barzi M, He G, Major AM, Shankar V, Lyman RA, Angner SS, Mackay TFC, Srinivasan S, Farris AB, Bissig KD, Cottle RN
Ex vivo gene editing and cell therapy for hereditary tyrosinemia type 1.
Hepatol Commun: 2024 May 1, 8(5);
[PubMed:38668730] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zahija Jazbec I, Demšar L, Jeršek B, Polak T
Meat Starter Culture Reduces Aspergillus parasiticus Production of Aflatoxins on Meat-Based and Salami Model Media.
Toxins (Basel): 2024 Apr 2, 16(4);
[PubMed:38668598] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Drviš I, Vrdoljak D, Dujić G, Dujić Ž, Foretić N
Construction and Validation of Newly Adapted Sport-Specific Anaerobic Diving Tests.
Sports (Basel): 2024 Apr 18, 12(4);
[PubMed:38668578] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Xing Y, Ge Y, Lu S, Yang T, Peng X
Dimethylcyclosiloxanes in Mobile Smart Terminal Devices: Concentrations, Distributions, Profiles, and Environmental Emissions.
Toxics: 2024 Apr 13, 12(4);
[PubMed:38668510] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sassa-Deepaeng T, Khumpirapang N, Yodthong W, Myat YY, Anuchapreeda S, Okonogi S
Effects of Salts and Other Contaminants on Ciprofloxacin Removal Efficiency of Green Synthesized Copper Nanoparticles.
Vet Sci: 2024 Apr 16, 11(4);
[PubMed:38668446] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Meletis E, Jarynowski A, Maksymowicz S, Kostoulas P, Belik V
Animal Health Discourse during Ecological Crises in the Media-Lessons Learnt from the Flood in Thessaly from the One Health Perspective.
Vet Sci: 2024 Mar 22, 11(4);
[PubMed:38668408] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kronenberger L, Mett J, Hoppstädter J, Müller U
Metabolic Profiling of SH-SY5Y and Neuro2A Cells in Relation to Fetal Calf Serum (FCS) Concentration in Culture Media.
Metabolites: 2024 Mar 26, 14(4);
[PubMed:38668316] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gordhan BG, Padarath K, Sewcharran A, McIvor A, VanNieuwenhze MS, Waja Z, Martinson N, Kana BD
Clinical Strains of Mycobacterium tuberculosis Representing Different Genotype Families Exhibit Distinct Propensities to Adopt the Differentially Culturable State.
Pathogens: 2024 Apr 12, 13(4);
[PubMed:38668273] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ferreira JM, Fernandes ÉKK, Kim JS, Soares FEF
The Combination of Enzymes and Conidia of Entomopathogenic Fungi against Aphis gossypii Nymphs and Spodoptera frugiperda Larvae.
J Fungi (Basel): 2024 Apr 17, 10(4);
[PubMed:38667963] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Guerra-Mateo D, Cano-Lira JF, Fernández-Bravo A, Gené J
Sunken Riches: Ascomycete Diversity in the Western Mediterranean Coast through Direct Plating and Flocculation, and Description of Four New Taxa.
J Fungi (Basel): 2024 Apr 11, 10(4);
[PubMed:38667952] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ayika MG, Rosano A, Valiente J, Chakrabarti S, Rollins JA, Dhillon B
Characterizing the Palm Pathogenic Thielaviopsis Species from Florida.
J Fungi (Basel): 2024 Mar 26, 10(4);
[PubMed:38667918] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mnassri K, Farahbakhsh R, Crespi N
Multilingual Hate Speech Detection: A Semi-Supervised Generative Adversarial Approach.
Entropy (Basel): 2024 Apr 18, 26(4);
[PubMed:38667898] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Savino N, Leamer J, Saripalli R, Zhang W, Bondar D, Glasser R
Robust Free-Space Optical Communication Utilizing Polarization for the Advancement of Quantum Communication.
Entropy (Basel): 2024 Mar 30, 26(4);
[PubMed:38667862] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wołoszyn M
Conformity and Mass Media Influence in the Sznajd Model on Regular Lattices.
Entropy (Basel): 2024 Mar 30, 26(4);
[PubMed:38667861] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gryczak DW, Lenzi EK, Rosseto MP, Evangelista LR, Zola RS
Non-Markovian Diffusion and Adsorption-Desorption Dynamics: Analytical and Numerical Results.
Entropy (Basel): 2024 Mar 27, 26(4);
[PubMed:38667848] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Pereira RFS, de Carvalho CCCR
Improving Bioprocess Conditions for the Production of Prodigiosin Using a Marine Serratia rubidaea Strain.
Mar Drugs: 2024 Mar 23, 22(4);
[PubMed:38667759] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Pfister R, Kaur R, Maesom G, Hager RL
Associations between Multiple Health Indicators and Carotid Artery Intima-Media Thickness in A Healthy and Active Elderly Population.
J Cardiovasc Dev Dis: 2024 Mar 28, 11(4);
[PubMed:38667719] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Carrel T
Sinus of Valsalva Aneurysm: Different Modes of Presentation and Techniques of Repair.
J Cardiovasc Dev Dis: 2024 Mar 27, 11(4);
[PubMed:38667718] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Isailă OM, Stoian VE, Fulga I, Piraianu AI, Hostiuc S
The Relationship between Subclinical Hypothyroidism and Carotid Intima-Media Thickness as a Potential Marker of Cardiovascular Risk: A Systematic Review and a Meta-Analysis.
J Cardiovasc Dev Dis: 2024 Mar 25, 11(4);
[PubMed:38667716] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Martín-Alfonso MA, Rubio-Valle JF, Estrada-Villegas GM, Sánchez-Domínguez M, Martín-Alfonso JE
Exploring Cellulose Triacetate Nanofibers as Sustainable Structuring Agent for Castor Oil: Formulation Design and Rheological Insights.
Gels: 2024 Mar 25, 10(4);
[PubMed:38667640] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Todor RD, Brătucu G, Candrea AN, Strempel CG, Anastasiu CV
Social Media Campaigns: A Game Changer for the Prevention of Breast Cancer in Romania.
Healthcare (Basel): 2024 Apr 22, 12(8);
[PubMed:38667627] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zakrzewski DM, Podlejska P, Kubziakowska W, Dzwilewski K, Waszak PM, Zawadzka M, Mazurkiewicz-Bełdzińska M
Evaluating the Credibility and Reliability of Online Information on Cannabidiol (CBD) for Epilepsy Treatment in Poland.
Healthcare (Basel): 2024 Apr 14, 12(8);
[PubMed:38667591] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Eltahir AOE, Lategan KL, David OM, Pool EJ, Luckay RC, Hussein AA
Green Synthesis of Gold Nanoparticles Using Liquiritin and Other Phenolics from Glycyrrhiza glabra and Their Anti-Inflammatory Activity.
J Funct Biomater: 2024 Apr 6, 15(4);
[PubMed:38667552] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Anyfanti P, Angeloudi E, Dara A, Pagkopoulou E, Moysidou GS, Deuteraiou K, Boutel M, Bekiari E, Doumas M, Kitas GD, Dimitroulas T
Non-Invasive Assessment of Micro- and Macrovascular Function after Initiation of JAK Inhibitors in Patients with Rheumatoid Arthritis.
Diagnostics (Basel): 2024 Apr 17, 14(8);
[PubMed:38667479] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Nedeljkovic-Arsenovic O, Ristić A, Đorđević N, Tomić M, Krljanac G, Maksimović R
Cardiac Magnetic Resonance Imaging as a Risk Stratification Tool in COVID-19 Myocarditis.
Diagnostics (Basel): 2024 Apr 10, 14(8);
[PubMed:38667436] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Frommer ML, Langridge BJ, Beedie A, Jasionowska S, Awad L, Denton CP, Abraham DJ, Abu-Hanna J, Butler PEM
Exploring Anti-Fibrotic Effects of Adipose-Derived Stem Cells: Transcriptome Analysis upon Fibrotic, Inflammatory, and Hypoxic Conditioning.
Cells: 2024 Apr 17, 13(8);
[PubMed:38667308] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chudinov V, Shardakov I, Kondyurina I, Kondyurin A
Attachment of Fibrinogen on Ion Beam Treated Polyurethane.
Biomimetics (Basel): 2024 Apr 15, 9(4);
[PubMed:38667245] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Song C, Wang F, Zhang X, Ma Y, Wu Y, He M, Niu X, Sun M
CoMnO(x) Nanoflower-Based Smartphone Sensing Platform and Virtual Reality Display for Colorimetric Detection of Ziram and Cu(2).
Biosensors (Basel): 2024 Apr 6, 14(4);
[PubMed:38667171] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Oh T, Kang JH, Lee Y, Choi SM
Comparison of Audience Behavior between eSports and Authentic Sports Fans.
Behav Sci (Basel): 2024 Apr 11, 14(4);
[PubMed:38667109] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Galily Y
From Sport Psychology to Action Philosophy: Immanuel Kant and the Case of Video Assistant Referees.
Behav Sci (Basel): 2024 Apr 1, 14(4);
[PubMed:38667089] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lee YF, Chen CY, Chou YL, Lin YH
Green Consumer Behavior of Sports Enthusiasts on TikTok-An Analysis of the Moderating Effect of Green Concern.
Behav Sci (Basel): 2024 Mar 30, 14(4);
[PubMed:38667081] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim J, Youm H, Kim S, Choi H, Kim D, Shin S, Chung J
Exploring the Influence of YouTube on Digital Health Literacy and Health Exercise Intentions: The Role of Parasocial Relationships.
Behav Sci (Basel): 2024 Mar 28, 14(4);
[PubMed:38667077] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yu Y, Yan S, Zhang Q, Xu Z, Zhou G, Jin H
The Influence of Affective Empathy on Online News Belief: The Moderated Mediation of State Empathy and News Type.
Behav Sci (Basel): 2024 Mar 27, 14(4);
[PubMed:38667074] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yeh SC, Tan AYK, Lai RL, Her RS, Fang WT, Liu SY
Influences of Social-Psychological Constructs in Predicting Taiwanese Pro-Environmental Behaviors.
Behav Sci (Basel): 2024 Mar 22, 14(4);
[PubMed:38667057] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ferheen I, Spurio R, Marcheggiani S
Emerging Issues on Antibiotic-Resistant Bacteria Colonizing Plastic Waste in Aquatic Ecosystems.
Antibiotics (Basel): 2024 Apr 8, 13(4);
[PubMed:38667014] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Miranda CD, Concha C, Hurtado L, Urtubia R, Rojas R, Romero J
Occurrence of Antimicrobial-Resistant Bacteria in Intestinal Contents of Wild Marine Fish in Chile.
Antibiotics (Basel): 2024 Apr 5, 13(4);
[PubMed:38667008] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Sapko MT, Manyak M, Panicucci R, Javitt JC
NRX-101 (D-Cycloserine + Lurasidone) Is Active against Drug-Resistant Urinary Pathogens In Vitro.
Antibiotics (Basel): 2024 Mar 28, 13(4);
[PubMed:38666984] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ulman A, Abd Rabou AFN, Al Mabruk S, Bariche M, Bilecenoğlu M, Demirel N, Galil BS, Hüseyinoğlu MF, Jimenez C, Hadjioannou L, Kosker AR, Peristeraki P, Saad A, Samaha Z, Stoumboudi MT, Temraz TA, Karachle PK
Assessment of Human Health Impacts from Invasive Pufferfish (Attacks, Poisonings and Fatalities) across the Eastern Mediterranean.
Biology (Basel): 2024 Mar 23, 13(4);
[PubMed:38666820] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Karamitros G, Lamaris GA
Navigating Web Content in Orofacial Clefts: Balancing Information Quality With Social Media Patient Engagement.
J Craniofac Surg: 2024 Apr 26;
[PubMed:38666780] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Choi YS, Jeon MJ, Doolittle WKL, Song DE, Kim K, Kim WB, Kim WG
Macrophage-induced carboxypeptidase A4 promotes the progression of anaplastic thyroid cancer.
Thyroid: 2024 Apr 26;
[PubMed:38666696] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cohen F, Bobker S
Artificial intelligence and social media: (Appropriately) harnessing headache medicine's new arsenal in the 21st century.
Headache: 2024 Apr 26;
[PubMed:38666603] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lam D, Fahmy A, Timashpolsky A, Sangal N, Chandrasekaran G, Cedrone M, Dedhia K
Quality of Life Outcomes After Pediatric Otitis Media Surgery: A Systematic Review and Meta-Analysis.
Laryngoscope: 2024 Apr 26;
[PubMed:38666491] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gupta AK, Faour S, Wang T, Ravi SP, Talukder M
Pattern hair loss and health care professionals: How well are we connecting with our audience?
J Cosmet Dermatol: 2024 Apr 26;
[PubMed:38666468] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gupta SS, Jordan KN
Does the Gender of Doctors Change a Patient's Perception?
Health Commun: 2024 Apr 26;1-10
[PubMed:38666429] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu C, Wang Y, Jin L, Wang Y, Liu D
Morphological, molecular, and biological characterization of bulb rot pathogens in stored Lanzhou lily and the in vitro antifungal efficacy of three plant essential oils.
Front Microbiol: 2024, 15;1307966
[PubMed:38666262] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sun J, Fang T, Wang H, Wang S
Photothermal optical coherence tomography for 3D live cell detection and mapping.
Opt Contin: 2023 Dec 15, 2(12);2468-2483
[PubMed:38665863] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ranger R, Truong D, Thompson J
Decreased portal vein attenuation and liver enhancement with reduced intravenous contrast dosage during the national iodinated contrast shortage of 2022.
J Clin Imaging Sci: 2024, 14;13
[PubMed:38665595] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hussain K, Saeed Z, Abbasi R, Sindhu M, Khattak A, Arafat S, Daud A, Mushtaq M
Towards understanding the role of content-based and contextualized features in detecting abuse on Twitter.
Heliyon: 2024 Apr 30, 10(8);e29593
[PubMed:38665572] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Shahzad MF, Xu S, Lim WM, Yang X, Khan QR
Artificial intelligence and social media on academic performance and mental well-being: Student perceptions of positive impact in the age of smart learning.
Heliyon: 2024 Apr 30, 10(8);e29523
[PubMed:38665566] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Parra-Cadenas B, Fernández I, Carrillo-Hermosilla F, García-Álvarez J, Elorriaga D
Addition of allyl Grignard to nitriles in air and at room temperature: experimental and computational mechanistic insights in pH-switchable synthesis.
Chem Sci: 2024 Apr 24, 15(16);5929-5937
[PubMed:38665519] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sharma R, Kumar K, Aditya AS, Yadav S, Ghai B, Saini L, Yadav J, Madan P, Sharma A, Bhati A, Sharma D, Suri V
To Study the Distress, Anxiety, Depression, and Sleep Effects of the COVID-19 Pandemic on Essential Workers.
Indian J Community Med: 2024 Mar-Apr, 49(2);424-428
[PubMed:38665460] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ho L, Breza E, Banerjee A, Chandrasekhar AG, Stanford FC, Fior R, Goldsmith-Pinkham P, Holland K, Hoppe E, Jean LM, Ogbu-Nwobodo L, Olken BA, Torres C, Vautrey PL, Warner E, Duflo E, Alsan M
The impact of large-scale social media advertising campaigns on COVID-19 vaccination: Evidence from two randomized controlled trials.
AEA Pap Proc: 2023 May, 113;653-658
[PubMed:38665387] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Damant J, Freddolino P, Dangoor M, Hu B, King D, Wittenberg R
Unpaid carers of people with dementia and information communication technology: Use, impact and ideas for the future.
Dementia (London): 2024 Apr 25;14713012241249793
[PubMed:38664990] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Varisco TJ, Fish H, Bolin J, Dadiomov D, Hill LG, Essien EJ, Wanat MA, Ginsburg D, Waggener J, Yazdanfard S, Song J, Chi W, Thornton D
Protocol for the development of a consensus practice guideline To address clinical and regulatory barriers to buprenorphine dispensing in community pharmacy.
Arch Public Health: 2024 Apr 25, 82(1);58
[PubMed:38664777] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim Y
Personality of organizational social media accounts and its relationship with characteristics of their photos: analyses of startups' Instagram photos.
BMC Psychol: 2024 Apr 25, 12(1);233
[PubMed:38664723] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Benbassat J
Trust in public health policy in the time of the COVID-19 epidemic in Israel.
Isr J Health Policy Res: 2024 Apr 25, 13(1);24
[PubMed:38664713] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ani JI, Ajayi-Ojo VO, Batisai K
Financial scarcity, psychological well-being and perceptions: an evaluation of the Nigerian currency redesign policy outcomes.
BMC Public Health: 2024 Apr 25, 24(1);1164
[PubMed:38664712] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Al-Mamun F, Hasan ME, Mostofa NB, Akther M, Mashruba T, Arif M, Chaahat AH, Salam AB, Akter M, Abedin MAA, Bulbul MIA, Adnan MS, Islam MS, Ahmed MS, Shahin MSM, Islam S, Hussain MM, Al Habib A, ALmerab MM, Gozal D, Muhit M, Roy N, Mamun MA
Prevalence and factors associated with digital addiction among students taking university entrance tests: a GIS-based study.
BMC Psychiatry: 2024 Apr 25, 24(1);322
[PubMed:38664623] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Saway BF, Courtney J, Barley J, Frankel B, Hofstetter C, Kalhorn S
Contrast enhanced ultrasound for traumatic spinal cord injury: an overview of current and future applications.
Spinal Cord Ser Cases: 2024 Apr 25, 10(1);31
[PubMed:38664470] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gumisirizah N, Nzabahimana J, Muwonge CM
Students' performance, attitude, and classroom observation data to assess the effect of problem-based learning approach supplemented by YouTube videos in Ugandan classroom.
Sci Data: 2024 Apr 25, 11(1);428
[PubMed:38664410] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Joshi K, Diaz A, O'Keeffe K, Schaffer JD, Chiarot PR, Huang P
Flow in temporally and spatially varying porous media: a model for transport of interstitial fluid in the brain.
J Math Biol: 2024 Apr 25, 88(6);69
[PubMed:38664246] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Serruys PW, Tobe A, Ninomiya K, Garg S, Finn AV, Scheller B, Cortese B, Colombo A, Reimers B, Basavarajaiah S, Sharif F, Fezzi S, Gao C, Tao L, Onuma Y
Editorial: Is the axiom of balloon angioplasty, "the more you gain the more you lose", still true in the era of DCB with paclitaxel?
Cardiovasc Revasc Med: 2024 Apr 6;
[PubMed:38664133] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zehrfeld N, Abelmann M, Benz S, Zippel CL, Beider S, Kramer E, Seeliger T, Sogkas G, Gödecke V, Ahrenstorf G, Armbruster FP, Skripuletz T, Witte T, Derda AA, Sonnenschein K, Ernst D
Primary Sjögren's syndrome independently promotes premature subclinical atherosclerosis.
RMD Open: 2024 Apr 24, 10(2);
[PubMed:38663882] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhang Q, Gao S, Li B, Li Q, Li X, Cheng J, Peng Z, Liang J, Zhang K, Hai J, Zhang B
Lithium-Doped Titanium Dioxide-Based Multilayer Hierarchical Structure for Accelerating Nerve-Induced Bone Regeneration.
ACS Appl Mater Interfaces: 2024 Apr 25;
[PubMed:38663861] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kermansaravi M, Shahabi Shahmiri S, Yarigholi F, Mehraz A
Conversion of one anastomosis gastric bypass to distal Roux-en-Y gastric bypass due to recurrent weight gain and gastroesophageal reflux disease: A video case report.
Asian J Endosc Surg: 2024 Jul, 17(3);e13314
[PubMed:38663858] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Poulsen VV, Jensen AB, Hadi A, Ærenlund MP, Karstensen JG, Novovic S
Pancreatic-portal vein fistula in acute pancreatitis successfully treated with endoscopic approach.
Endoscopy: 2024 Dec, 56(S 01);E354-E355
[PubMed:38663856] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Strader MB, Saha AL, Fernandes C, Sharma K, Hadiwinarta C, Calheiros D, Conde-de-Oliveira G, Gonçalves T, Slater JE
Distinct proteomes and allergen profiles appear across the life cycle stages of Alternaria alternata.
J Allergy Clin Immunol: 2024 Apr 23;
[PubMed:38663817] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Akkipeddi SMK, Ellens N, Singh R, Jalal MI, Schartz D, Bender MT
"Empty Cyst Sign" appearance of CSF-venous fistula on digital spinal myelography.
World Neurosurg: 2024 Apr 23;
[PubMed:38663740] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ruiz-Llacsahuanga B, Sanchez-Tamayo M, Dev Kumar G, Critzer F
Comparison of three air sampling methods for the quantification of Salmonella, Shiga-toxigenic Escherichia coli (STEC), coliforms, and generic E. coli from bioaerosols of cattle and poultry farms.
J Food Prot: 2024 Apr 23;100282
[PubMed:38663638] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bernstein DN, Hammoor BT, Clements CU, Tobert DG, Cha TD, Aidlen JP, Hershman SH, Bono CM, Fogel HA
Assessing the Variation and Drivers of Cost in 1-Level Lumbar Fusion: A Time-Driven Activity-Based Costing Analysis.
Spine J: 2024 Apr 23;
[PubMed:38663483] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

DeRidder LB, Hare KA, Lopes A, Jenkins J, Fitzgerald N, MacPherson E, Fabian N, Morimoto J, Chu JN, Kirtane AR, Madani W, Ishida K, Kuosmanen JLP, Zecharias N, Colangelo CM, Huang HW, Chilekwa M, Lal NB, Srinivasan SS, Hayward AM, Wolpin BM, Trumper D, Quast T, Rubinson DA, Langer R, Traverso G
Closed-loop automated drug infusion regulator: A clinically translatable, closed-loop drug delivery system for personalized drug dosing.
Med: 2024 Apr 23;
[PubMed:38663403] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Schäfer JF
Kommentar zu „KINDER – Lymphomstaging und -restaging mit der kontrastmittelfreien FDG-PET/MRT“.
Rofo: 2024 May, 196(5);422-423
[PubMed:38663378] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Santos RP, Moreira SSJ, Bezerra LGP, Cavalcante YCS, Pereira AG, Matos TM, Oliveira MF, Silva AR
Comparison between commercial media and TRIS-egg yolk extender in the refrigerated storage of collared peccary semen at 17°C.
Anim Reprod Sci: 2024 Apr 22, 265;107478
[PubMed:38663148] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Murley WD, Oberle CD, Howard KJ, Perrotte JK
Anxiety connects social media use to food and alcohol disturbance and disordered eating when social support is low.
Eat Behav: 2024 Apr 18, 53;101879
[PubMed:38663045] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rahman A, Alam S, Jahan SA, Mollah MYA, Susan MABH
Understanding the Droplet Diffusion in Ionic Liquid Microemulsions.
J Phys Chem B: 2024 Apr 25;
[PubMed:38663000] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chang J, Kerr D 4th, Zheng M, Seyler T
Chondrocyte Invasion May Be a Mechanism for Persistent Staphylococcus Aureus Infection In Vitro.
Clin Orthop Relat Res: 2024 Apr 23;
[PubMed:38662927] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Alkheyr Z, Murad M, Das P, Aljenaee K, Kamel C, Hajji SA, Flood J, Atkin SL, Ali KF
Self-esteem and body image satisfaction in women with PCOS in the Middle East: Cross-sectional social media study.
PLoS One: 2024, 19(4);e0301707
[PubMed:38662709] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Liu Y, Yang Y, Zhang X, Yang Y
The impact of technological innovation on the green digital economy and development strategies.
PLoS One: 2024, 19(4);e0301051
[PubMed:38662690] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hussain A, Hussain Z, Gogate M, Dashtipour K, Ng D, Riaz MS, Goman A, Sheikh A, Hussain A
Impact of the Covid-19 pandemic on audiology service delivery: Observational study of the role of social media in patient communication.
PLoS One: 2024, 19(4);e0288223
[PubMed:38662689] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Weng S, Huang H, Huang L, Zhang Z
Recent Progress on Targeted Gel Media for the Application of Bioanalysis.
Crit Rev Anal Chem: 2024 Apr 25;1-20
[PubMed:38662629] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Robb CL, Marquis KM, Steinbrecher KL, Hammer MM, Henry T, Bhalla S, Raptis CA
Evaluation and Utilization of Flow Artifacts at CT.
Radiographics: 2024 May, 44(5);e230134
[PubMed:38662588] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Dileep NP, Patel J, Pushkar Y
Evaluation of Ce-MOFs as Photoanode Materials for the Water Oxidation Reaction: The Effect of Doping with [Ru(bpy)(dcbpy)(H(2)O)(2)](2+) Catalyst.
Inorg Chem: 2024 Apr 25;
[PubMed:38662572] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao Y, Paulus MP, Tapert SF, Bagot KS, Constable RT, Yaggi HK, Redeker NS, Potenza MN
Screen time, sleep, brain structural neurobiology, and sequential associations with child and adolescent psychopathology: Insights from the ABCD study.
J Behav Addict: 2024 Apr 24;
[PubMed:38662452] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Abeykoon SW, White RJ
Single Voltammetric Sweep Calibration-Free Interrogation of Electrochemical Aptamer-Based Sensors Employing Continuous Square Wave Voltammetry.
Anal Chem: 2024 Apr 25;
[PubMed:38662230] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wani BA, Magray JA, Ganie AH, Rashid S, Roof-Ul-Qadir, Javid H, Nawchoo IA
Seed biology imperative for conservation and restoration of Swertia thomsonii C.B. Clarke-an endemic medicinal plant of Himalaya.
Environ Monit Assess: 2024 Apr 25, 196(5);472
[PubMed:38662176] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Duc HD, Oanh NT, Dieu Thuy NT, Kim Xuan NT
Degradation of pretilachlor and fenclorim and effects of these compounds on bacterial communities under anaerobic condition.
Biodegradation: 2024 Apr 25;
[PubMed:38662140] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Deantas-Jahn C, Mendoza SN, Licona-Cassani C, Orellana C, Saa PA
Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation.
Appl Microbiol Biotechnol: 2024 Apr 25, 108(1);310
[PubMed:38662130] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Vincent J, Fortunati L
How Prepaid Billing in Italy Helped Shape the Global Diffusion of Mobile Phones.
Technol Cult: 2024, 65(1);293-314
[PubMed:38661802] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Eales L, Banegas J, Cherubini FDS, Ibrahim SA, Ahn RJ, Nelson MR, Dwivedi R, Ferguson GM
Screening parent-adolescent relationships, screen behaviors, tridimensional acculturation, and health among Black immigrant and refugee adolescents during dual pandemics.
J Fam Psychol: 2024 Apr 25;
[PubMed:38661641] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wenzel J, Seideman C, Semins MJ
Occupational Radiation Exposure During Pregnancy: A Survey of Urologists on Perception, Experience, and Practice Patterns.
J Endourol: 2024 Apr 25;
[PubMed:38661543] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Leonardsen AL, Brevik L
Cell Phones in the OR: A Cross-Sectional Study of Norwegian Perioperative Nurses' Knowledge, Practice, and Attitudes.
AORN J: 2024 May, 119(5);e1-e10
[PubMed:38661447] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Pratiwi RA, Avidhianita D, Margono A, Julianto I, Nyoman Putri Artiningsih DA, Megantoro A
Potential Use of L-Arginine Amino Acids towards Proliferation and Migratory Speed Rate of Human Dental Pulp Stem Cells (hDPSCs).
Eur Endod J: 2024 Apr 25;
[PubMed:38661064] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Collins MKR, Lazard AJ, Dillman Carpentier F, Comello ML, Benedict C, Kent EE, Yu C
Reel reflections: the role of entertainment media narratives in coping among young adult cancer survivors.
J Psychosoc Oncol: 2024 Apr 25;1-22
[PubMed:38661002] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Van Borek S, Logie CH, Mbende B, Ghoma Linguissi LS, MacKenzie F, Ouedraogo A, Lad A, Boumba A, Gittings L, Loemba H
Esengo ya Bosembo ("Joy of Equity"): Development of an Advocacy Video to Reduce Stigma and to Promote Sexual and Reproductive Health and Rights of Women Sex Professionals in Pointe-Noire, Congo Republic.
Health Promot Pract: 2024 Apr 25;15248399241245053
[PubMed:38660994] [WorldCat.org: ISSN ESSN ] [DOI] ( a) 

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151] [WorldCat.org: ISSN ESSN ] [DOI] ( o)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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