Difference between revisions of "ISA"
Line 123: Line 123:
 
<pubmed>
 
<pubmed>
 
18464786
 
18464786
 +
[[Media:PPA.pdf|18464786]]
 
</pubmed>
 
</pubmed>
 
  [[Media:PPA.pdf|PDF]]
 
  [[Media:PPA.pdf|PDF]]

Revision as of 11:32, 1 February 2016



An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Halim MLD, Russo LN, Echave KN, Tawa S, Sakamoto DJ, Portillo MA
"She's so pretty": The development of valuing personal attractiveness among young children.
Child Dev: 2024 Apr 27;
[PubMed:38676407] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Caramaschi S, Olsson CM, Orchard E, Molloy J, Salvi D
Assessing the Effect of Data Quality on Distance Estimation in Smartphone-Based Outdoor 6MWT.
Sensors (Basel): 2024 Apr 20, 24(8);
[PubMed:38676249] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hofmann K, Hofmann S, Weigl F, Mai J, Schreiner S
DMSO and Its Role in Differentiation Impact Efficacy of Human Adenovirus (HAdV) Infection in HepaRG Cells.
Viruses: 2024 Apr 19, 16(4);
[PubMed:38675973] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bonanni P, Maio M, Beretta GD, Icardi G, Rossi A, Cinieri S
Improving Influenza Vaccination Coverage in Patients with Cancer: A Position Paper from a Multidisciplinary Expert Group.
Vaccines (Basel): 2024 Apr 16, 12(4);
[PubMed:38675802] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bouloukaki I, Christodoulakis A, Papageorgakopoulou S, Tsiligianni I
The Prevalence and Determinants of Hesitancy for Regular COVID-19 Vaccination among Primary Healthcare Patients with Asthma or COPD in Greece: A Cross-Sectional Study.
Vaccines (Basel): 2024 Apr 14, 12(4);
[PubMed:38675796] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dang JHT, Gori A, Rios L, Rolon AM, Zhang J, Chen MS Jr
"You Don't Know If It's the Truth or a Lie": Exploring Human Papillomavirus (HPV) Vaccine Hesitancy among Communities with Low HPV Vaccine Uptake in Northern California.
Vaccines (Basel): 2024 Apr 1, 12(4);
[PubMed:38675754] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ferreira-Filho VC, Morais B, Vieira BJC, Waerenborgh JC, Carmezim MJ, Tóth CN, Même S, Lacerda S, Jaque D, Sousa CT, Campello MPC, Pereira LCJ
Influence of SPION Surface Coating on Magnetic Properties and Theranostic Profile.
Molecules: 2024 Apr 17, 29(8);
[PubMed:38675647] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cordinier A, Petukhov I, Hucher N, Grisel M
An Innovative Methodology to Characterize, at the Molecular Scale, Interactions in Polysaccharide Aqueous Solutions.
Molecules: 2024 Apr 15, 29(8);
[PubMed:38675607] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang Z, Li S, Li Q, Wang W, Liu M, Yang S, Zhang L, Yang D, Du G, Lu Y
A Novel Cocrystal of Daidzein with Piperazine to Optimize the Solubility, Permeability and Bioavailability of Daidzein.
Molecules: 2024 Apr 10, 29(8);
[PubMed:38675529] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Park J, Koh I, Cha J, Oh Y, Shim JK, Kim H, Moon JH, Kim EH, Chang JH, Kim P, Kang SG
Comparison of Glioblastoma Cell Culture Platforms Based on Transcriptional Similarity with Paired Tissue.
Pharmaceuticals (Basel): 2024 Apr 19, 17(4);
[PubMed:38675489] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Rapp BE, Voigt A, Dirschka M, Rapp M, Länge K
Surface Acoustic Wave Resonator Chip Setup for the Elimination of Interfering Conductivity Responses.
Micromachines (Basel): 2024 Apr 5, 15(4);
[PubMed:38675312] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Song X, Lu R, Guo Z
High-Performance Reconfigurable Pipeline Implementation for FPGA-Based SmartNIC.
Micromachines (Basel): 2024 Mar 27, 15(4);
[PubMed:38675261] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jiang LL, Li ZG, Wang DY, Zhai JJ, Kong XX
Theoretical Analysis of Thermophysical Properties of 3D Carbon/Epoxy Braided Composites with Varying Temperature.
Polymers (Basel): 2024 Apr 21, 16(8);
[PubMed:38675085] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Filipek K, Otulakowski Ł, Jelonek K, Utrata-Wesołek A
Degradable Nanogels Based on Poly[Oligo(Ethylene Glycol) Methacrylate] (POEGMA) Derivatives through Thermo-Induced Aggregation of Polymer Chain and Subsequent Chemical Crosslinking.
Polymers (Basel): 2024 Apr 20, 16(8);
[PubMed:38675081] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cheng Y, Wang J, Fang C, Du Y, Su J, Chen J, Zhang Y
Recent Progresses in Pyrolysis of Plastic Packaging Wastes and Biomass Materials for Conversion of High-Value Carbons: A Review.
Polymers (Basel): 2024 Apr 11, 16(8);
[PubMed:38674986] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lucherini Angeletti L, Spinelli MC, Cassioli E, Rossi E, Castellini G, Brogioni G, Ricca V, Rotella F
From Restriction to Intuition: Evaluating Intuitive Eating in a Sample of the General Population.
Nutrients: 2024 Apr 21, 16(8);
[PubMed:38674930] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Aleid S, Alshahrani NZ, Alsedrah S, Carvalho AB, Lima MJ, Teixeira-Lemos E, Raposo A
The Role of Social Media Advertisement and Physical Activity on Eating Behaviors among the General Population in Saudi Arabia.
Nutrients: 2024 Apr 19, 16(8);
[PubMed:38674905] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen H, Sosa A, Chen F
Growth and Cell Size of Microalga Auxenochlorella protothecoides AS-1 under Different Trophic Modes.
Microorganisms: 2024 Apr 20, 12(4);
[PubMed:38674779] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Marius M, Fernandez C
Non-Microbiological Mycobacterial Detection Techniques for Quality Control of Biological Products: A Comprehensive Review.
Microorganisms: 2024 Apr 12, 12(4);
[PubMed:38674732] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Shi M, Li YZ
Evaluation of the Growth, Sporulation, Fungicide Efficacy, and Host Range of Ramularia sphaeroidea.
Microorganisms: 2024 Apr 10, 12(4);
[PubMed:38674710] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Walsh D, Bevan J, Harrison F
How Does Airway Surface Liquid Composition Vary in Different Pulmonary Diseases, and How Can We Use This Knowledge to Model Microbial Infections?
Microorganisms: 2024 Apr 3, 12(4);
[PubMed:38674677] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Nakanishi A, Yomogita M, Horimoto T
Evaluation of Cellular Responses by Chlamydomonas reinhardtii in Media Containing Dairy-Processing Residues Derived from Cheese as Nutrients by Analyzing Cell Growth Activity and Comprehensive Gene Transcription Levels.
Microorganisms: 2024 Mar 31, 12(4);
[PubMed:38674659] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen H, Yu S, Yu Z, Ma M, Liu M, Pei H
Phycoremediation Potential of Salt-Tolerant Microalgal Species: Motion, Metabolic Characteristics, and Their Application for Saline-Alkali Soil Improvement in Eco-Farms.
Microorganisms: 2024 Mar 28, 12(4);
[PubMed:38674620] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Elazzazy AM, Mobarki MO, Baghdadi AM, Bataweel NM, Al-Hejin AM
Optimization of Culture Conditions and Batch Process Control for the Augmented Production of Bacteriocin by Bacillus Species.
Microorganisms: 2024 Mar 25, 12(4);
[PubMed:38674596] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Smirnova G, Tyulenev A, Sutormina L, Kalashnikova T, Muzyka N, Ushakov V, Samoilova Z, Oktyabrsky O
Regulation of Cysteine Homeostasis and Its Effect on Escherichia coli Sensitivity to Ciprofloxacin in LB Medium.
Int J Mol Sci: 2024 Apr 17, 25(8);
[PubMed:38674008] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Obregón-Mendoza MA, Meza-Morales W, Rodríguez-Hernández KD, Estévez-Carmona MM, Pérez-González LL, Tavera-Hernández R, Ramírez-Apan MT, Barrera-Hernández D, García-Olivares M, Monroy-Torres B, Nieto-Camacho A, Chávez MI, Sánchez-Obregón R, Enríquez RG
The Antitumoral Effect In Ovo of a New Inclusion Complex from Dimethoxycurcumin with Magnesium and Beta-Cyclodextrin.
Int J Mol Sci: 2024 Apr 16, 25(8);
[PubMed:38673967] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Veraguas-Dávila D, Zapata-Rojas C, Aguilera C, Saéz-Ruiz D, Saravia F, Castro FO, Rodriguez-Alvarez L
Proteomic Analysis of Domestic Cat Blastocysts and Their Secretome Produced in an In Vitro Culture System without the Presence of the Zona Pellucida.
Int J Mol Sci: 2024 Apr 14, 25(8);
[PubMed:38673927] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Semicheva A, Ersoy U, Vasilaki A, Myrtziou I, Kanakis I
Defining the Most Potent Osteoinductive Culture Conditions for MC3T3-E1 Cells Reveals No Implication of Oxidative Stress or Energy Metabolism.
Int J Mol Sci: 2024 Apr 10, 25(8);
[PubMed:38673767] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen C, Cui D, Li J, Ren C, Yang D, Xiang P, Liu J
Organophosphorus Flame Retardant TPP-Induced Human Corneal Epithelial Cell Apoptosis through Caspase-Dependent Mitochondrial Pathway.
Int J Mol Sci: 2024 Apr 9, 25(8);
[PubMed:38673741] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Iacobellis F, Di Serafino M, Russo C, Ronza R, Caruso M, Dell'Aversano Orabona G, Camillo C, Sabatino V, Grimaldi D, Rinaldo C, Barbuto L, Verde F, Giacobbe G, Schillirò ML, Scarano E, Romano L
Safe and Informed Use of Gadolinium-Based Contrast Agent in Body Magnetic Resonance Imaging: Where We Were and Where We Are.
J Clin Med: 2024 Apr 10, 13(8);
[PubMed:38673466] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Moustakli E, Zikopoulos A, Skentou C, Bouba I, Dafopoulos K, Georgiou I
Evolution of Minimally Invasive and Non-Invasive Preimplantation Genetic Testing: An Overview.
J Clin Med: 2024 Apr 9, 13(8);
[PubMed:38673433] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Negri A, Barazzetti A, Rinzivillo A, Mariani R, Di Monte C
Cognitive and Relational Processes Associated to Mental Health in Italian High School Students during COVID-19 and Russian-Ukrainian War Outbreaks.
Int J Environ Res Public Health: 2024 Apr 19, 21(4);
[PubMed:38673420] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Himemiya-Hakucho A, Taketani A, Nakagawa A, Sakai H, Shigemoto A, Takase I
Practices and Awareness Regarding an Infant's Sleep Environment among Japanese Caregivers: A Cross-Sectional Survey.
Int J Environ Res Public Health: 2024 Apr 12, 21(4);
[PubMed:38673381] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Fitri NK, Meliani M, Marpaung K, Cahyadi RAD, Permatasari R, Zainumi CM, Lubis IND
Community Actions and Insights in the Battle against COVID-19 at the Start of the Pandemic: A District Study Observation from Medan, Indonesia.
Int J Environ Res Public Health: 2024 Apr 4, 21(4);
[PubMed:38673355] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tetzlaff EJ, Mourad F, Goulet N, Gorman M, Siblock R, Kidd SA, Bezgrebelna M, Kenny GP
"Death Is a Possibility for Those without Shelter": A Thematic Analysis of News Coverage on Homelessness and the 2021 Heat Dome in Canada.
Int J Environ Res Public Health: 2024 Mar 27, 21(4);
[PubMed:38673318] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hirani SAA
Barriers Affecting Breastfeeding Practices of Refugee Mothers: A Critical Ethnography in Saskatchewan, Canada.
Int J Environ Res Public Health: 2024 Mar 25, 21(4);
[PubMed:38673311] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Benedetto L, Rollo S, Cafeo A, Di Rosa G, Pino R, Gagliano A, Germanò E, Ingrassia M
Emotional and Behavioural Factors Predisposing to Internet Addiction: The Smartphone Distraction among Italian High School Students.
Int J Environ Res Public Health: 2024 Mar 22, 21(4);
[PubMed:38673299] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhao R, Shi C, Zhang R, Wang W, Zhu H, Luo J
Study on the Freeze-Thaw Resistance of Concrete Pavements in Seasonally Frozen Regions.
Materials (Basel): 2024 Apr 19, 17(8);
[PubMed:38673259] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang Z, Zhou X, Shang Y, Wang B, Lu K, Gan W, Lai H, Wang J, Huang C, Chen Z, Hao C, Feng E, Li J
Synthesis and Characterization of Superhydrophobic Epoxy Resin Coating with SiO(2)@CuO/HDTMS for Enhanced Self-Cleaning, Photocatalytic, and Corrosion-Resistant Properties.
Materials (Basel): 2024 Apr 17, 17(8);
[PubMed:38673205] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Penot C, Maniam KK, Paul S
Electrochemical Characterization of Electrodeposited Copper in Amine CO(2) Capture Media.
Materials (Basel): 2024 Apr 16, 17(8);
[PubMed:38673182] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Giannitto C, Carnicelli G, Lusi S, Ammirabile A, Casiraghi E, De Virgilio A, Esposito AA, Farina D, Ferreli F, Franzese C, Frigerio GM, Lo Casto A, Malvezzi L, Lorini L, Othman AE, Preda L, Scorsetti M, Bossi P, Mercante G, Spriano G, Balzarini L, Francone M
The Use of Artificial Intelligence in Head and Neck Cancers: A Multidisciplinary Survey.
J Pers Med: 2024 Mar 25, 14(4);
[PubMed:38672968] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Matadamas-Ortiz A, Pérez-Robles JF, Reynoso-Camacho R, Amaya-Llano SL, Amaro-Reyes A, Di Pierro P, Regalado-González C
Effect of Amine, Carboxyl, or Thiol Functionalization of Mesoporous Silica Particles on Their Efficiency as a Quercetin Delivery System in Simulated Gastrointestinal Conditions.
Foods: 2024 Apr 16, 13(8);
[PubMed:38672881] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gao Y, Li X, Xu H, Sun H, Zhang J, Wu X, Fu J
The Liquid-Fermentation Formulation of Sanghuangporus sanghuang Optimized by Response Surface Methodology and Evaluation of Biological Activity of Extracellular Polysaccharides.
Foods: 2024 Apr 13, 13(8);
[PubMed:38672864] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Schmidt P, Lindemeyer J, Raut P, Schütz M, Saniternik S, Jönsson J, Endepols H, Fischer T, Quaas A, Schlößer HA, Thelen M, Grüll H
Multiparametric Characterization of the DSL-6A/C1 Pancreatic Cancer Model in Rats.
Cancers (Basel): 2024 Apr 17, 16(8);
[PubMed:38672617] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Petrica L, Gadalean F, Muntean DM, Jianu DC, Vlad D, Dumitrascu V, Bob F, Milas O, Suteanu-Simulescu A, Glavan M, Ursoniu S, Balint L, Mogos-Stefan M, Ienciu S, Cretu OM, Popescu R, Gluhovschi C, Iancu L, Vlad A
Mitochondrial DNA and Inflammation Are Associated with Cerebral Vessel Remodeling and Early Diabetic Kidney Disease in Patients with Type 2 Diabetes Mellitus.
Biomolecules: 2024 Apr 19, 14(4);
[PubMed:38672515] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Manou D, Golfinopoulou MA, Alharbi SND, Alghamdi HA, Alzahrani FM, Theocharis AD
The Expression of Serglycin Is Required for Active Transforming Growth Factor β Receptor I Tumorigenic Signaling in Glioblastoma Cells and Paracrine Activation of Stromal Fibroblasts via CXCR-2.
Biomolecules: 2024 Apr 10, 14(4);
[PubMed:38672477] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Casado-Losada I, Acosta M, Schädl B, Priglinger E, Wolbank S, Nürnberger S
Unlocking Potential: Low Bovine Serum Albumin Enhances the Chondrogenicity of Human Adipose-Derived Stromal Cells in Pellet Cultures.
Biomolecules: 2024 Mar 28, 14(4);
[PubMed:38672430] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Borawski W, Kiełbowicz Z, Kubiak-Nowak D, Prządka P, Pasternak G
Computed Tomographic Findings of Dental Disease and Secondary Diseases of the Head Area in Client-Owned Domestic Rabbits (Oryctolagus cuniculus): 90 Cases.
Animals (Basel): 2024 Apr 11, 14(8);
[PubMed:38672307] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ríos S, González LG, Saez CG, Smith PC, Escobar LM, Martínez CE
L-PRF Secretome from Both Smokers/Nonsmokers Stimulates Angiogenesis and Osteoblast Differentiation In Vitro.
Biomedicines: 2024 Apr 16, 12(4);
[PubMed:38672228] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Davern M, O' Donovan C, Donlon NE, Mylod E, Gaughan C, Bhardwaj A, Sheppard AD, Bracken-Clarke D, Butler C, Ravi N, Donohoe CL, Reynolds JV, Lysaght J, Conroy MJ
Analysing the Combined Effects of Radiotherapy and Chemokine Receptor 5 Antagonism: Complementary Approaches to Promote T Cell Function and Migration in Oesophageal Adenocarcinoma.
Biomedicines: 2024 Apr 8, 12(4);
[PubMed:38672174] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Martini S, Ricci ED, Masiello A, Zacà S, Celesia BM, Ferrara S, Di Filippo G, Tartaglia A, Basile R, Angiletta D, Maggi P
Evaluation of Myo-Intimal Media Thickness and Atheromatous Plaques in People Living with HIV from the Archiprevaleat Cohort vs. HIV-Negative Subjects.
Biomedicines: 2024 Apr 1, 12(4);
[PubMed:38672129] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Frigerio B, Coggi D, Bonomi A, Amato M, Capra N, Colombo GI, Sansaro D, Ravani A, Savonen K, Giral P, Gallo A, Pirro M, Gigante B, Eriksson P, Strawbridge RJ, Mulder DJ, Tremoli E, Veglia F, Baldassarre D, IMPROVE Study Group
Determinants of Carotid Wall Echolucency in a Cohort of European High Cardiovascular Risk Subjects: A Cross-Sectional Analysis of IMPROVE Baseline Data.
Biomedicines: 2024 Mar 26, 12(4);
[PubMed:38672093] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Worschech F, Passarotto E, Losch H, Oku T, Lee A, Altenmüller E
What Does It Take to Play the Piano? Cognito-Motor Functions Underlying Motor Learning in Older Adults.
Brain Sci: 2024 Apr 20, 14(4);
[PubMed:38672054] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bosshard S, Rodero E, Rodríguez-de-Dios I, Brickner J
Radio, Podcasts, and Music Streaming-An Electroencephalography and Physiological Analysis of Listeners' Attitude, Attention, Memory, and Engagement.
Brain Sci: 2024 Mar 29, 14(4);
[PubMed:38671982] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Byun KA, Park Y, Oh S, Batsukh S, Son KH, Byun K
Co-Treatment with Phlorotannin and Extracellular Vesicles from Ecklonia cava Inhibits UV-Induced Melanogenesis.
Antioxidants (Basel): 2024 Mar 28, 13(4);
[PubMed:38671856] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Arano-Martinez JA, Hernández-Benítez JA, Martines-Arano H, Rodríguez-Tovar AV, Trejo-Valdez M, García-Pérez BE, Torres-Torres C
Multiphotonic Ablation and Electro-Capacitive Effects Exhibited by Candida albicans Biofilms.
Bioengineering (Basel): 2024 Mar 28, 11(4);
[PubMed:38671755] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Steinhardt M, Marka AW, Ziegelmayer S, Makowski M, Braren R, Graf M, Gawlitza J
Comparison of Virtual Non-Contrast and True Non-Contrast CT Images Obtained by Dual-Layer Spectral CT in COPD Patients.
Bioengineering (Basel): 2024 Mar 22, 11(4);
[PubMed:38671723] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Villodas ML
Suicidality and Non-Suicidal Self-Injury: A Narrative Review of Measurement, Risk, and Disparities among Minoritized and System-Involved Youth in the USA.
Children (Basel): 2024 Apr 14, 11(4);
[PubMed:38671683] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tekeci Y, Torpil B, Altuntaş O
The Impact of Screen Exposure on Screen Addiction and Sensory Processing in Typically Developing Children Aged 6-10 Years.
Children (Basel): 2024 Apr 13, 11(4);
[PubMed:38671681] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Karatekin Ş, Şenol E, Karabayır N
Should Breastfeeding Be Interrupted after Radiological Imaging Examinations? Evidence and Clinical Applications.
Children (Basel): 2024 Apr 9, 11(4);
[PubMed:38671670] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cannatà D, Galdi M, Martina S, Rongo R, D'Antò V, Valletta R, Bucci R
Preformed Elastodontic Appliances: Awareness and Attitude of Orthodontists and General Dental Practitioners.
Children (Basel): 2024 Apr 1, 11(4);
[PubMed:38671635] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Alshehri S, Alahmari KA
Pediatric Acute Mastoiditis in Saudi Arabia: Demographic Insights, Clinical Profiles, and Prognostic Factors.
Children (Basel): 2024 Mar 28, 11(4);
[PubMed:38671619] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tiruneh MG, Fenta ET, Endeshaw D, Eshetu HB, Adal O, Tareke AA, Kebede N, Delie AM, Bogale EK, Anagaw TF
Six in ten female youths in low-income East African countries had problems in accessing health care: a multilevel analysis of recent demographic and health surveys from 2016-2021.
BMC Health Serv Res: 2024 Apr 26, 24(1);533
[PubMed:38671487] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Brett BA, Conroy M, Doshi H, Lowe MX, Kalcheff-Korn S, Jackson H
An observational time-series study on the behavioral effects of adjunctive artisanal cannabidiol use by adults with treatment resistant epilepsies.
BMC Neurol: 2024 Apr 26, 24(1);141
[PubMed:38671370] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Andráško I, Duží B, Martinát S
A dam or a polder? Stakeholders' dispute over the "right" flood-protection measure in the Czech Republic.
Ambio: 2024 Apr 26;
[PubMed:38671180] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cattaneo GM, Varotto-Boccazzi I, Molteni R, Ronchetti F, Gabrieli P, Mendoza-Roldan JA, Otranto D, Montomoli E, Bandi C, Epis S
A novel chemically defined medium for the biotechnological and biomedical exploitation of the cell factory Leishmania tarentolae.
Sci Rep: 2024 Apr 26, 14(1);9562
[PubMed:38671070] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Miah MSU, Kabir MM, Sarwar TB, Safran M, Alfarhood S, Mridha MF
A multimodal approach to cross-lingual sentiment analysis with ensemble of transformer and LLM.
Sci Rep: 2024 Apr 26, 14(1);9603
[PubMed:38671064] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Borodzicz-Jazdzyk S, Vink CEM, Demirkiran A, Hoek R, de Mooij GW, Hofman MBM, Wilgenhof A, Appelman Y, Benovoy M, Götte MJW
Clinical implementation of a fully automated quantitative perfusion cardiovascular magnetic resonance imaging workflow with a simplified dual-bolus contrast administration scheme.
Sci Rep: 2024 Apr 26, 14(1);9665
[PubMed:38671061] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Pichaiyotinkul P, Leksingto J, Sukkasam N, In-Na P, Incharoensakdi A, Monshupanee T
Erythromycin mediates co-flocculation between cyanobacterium Synechocystis sp. PCC 6803 and filamentous fungi in liquid cultivation without organic compounds.
Sci Rep: 2024 Apr 26, 14(1);9640
[PubMed:38671026] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang GK, Yang YM, Jia D
Programming viscoelastic properties in a complexation gel composite by utilizing entropy-driven topologically frustrated dynamical state.
Nat Commun: 2024 Apr 26, 15(1);3569
[PubMed:38671020] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Scheschenja M, Bastian MB, Wessendorf J, Owczarek AD, König AM, Viniol S, Mahnken AH
ChatGPT: Evaluating answers on contrast media related questions and finetuning by providing the model with the ESUR guideline on contrast agents.
Curr Probl Diagn Radiol: 2024 Apr 21;
[PubMed:38670921] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hones KM, Hao KA, Wright JO, Wright TW, Hartzell J, Myara DA, Levings PP, Badman B, Ghivizzani SC, Watson Levings RS
Toxic effects of local anesthetics on rat fibroblasts: An in-vitro study.
J Orthop Sci: 2024 Apr 25;
[PubMed:38670825] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ketoja JA, Saurio K, Rautkoski H, Kenttä E, Tanaka A, Koponen AI, Virkajärvi J, Heinonen K, Kostamo K, Järvenpää A, Hyry N, Heikkilä P, Hankonen N, Harlin A
Design of biodegradable cellulose filtration material with high efficiency and breathability.
Carbohydr Polym: 2024 Jul 15, 336;122133
[PubMed:38670771] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Boylan S, Arsenault C, Barreto M, Bozza FA, Fonseca A, Forde E, Hookham L, Humphreys GS, Ichihara MY, Le Doare K, Liu XF, McNamara E, Mugunga JC, Oliveira JF, Ouma J, Postlethwaite N, Retford M, Reyes LF, Morris AD, Wozencraft A
Data challenges for international health emergencies: lessons learned from ten international COVID-19 driver projects.
Lancet Digit Health: 2024 May, 6(5);e354-e366
[PubMed:38670744] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Corps KN, Terry O, Lopez-Olivo MA
Patient Voices in Rheumatic Immune-related Adverse Events.
Rheum Dis Clin North Am: 2024 May, 50(2);241-254
[PubMed:38670723] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

ADEQUATE Paediatric Trial Group
Randomised multicentre effectiveness trial of rapid syndromic testing by panel assay in children presenting to European emergency departments with acute respiratory infections-trial protocol for the ADEQUATE Paediatric trial.
BMJ Open: 2024 Apr 25, 14(4);e076338
[PubMed:38670622] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tang H, Spreckley M, van Sluijs E, Ahern AL, Smith AD
The impact of social media interventions on eating behaviours and diet in adolescents and young adults: a mixed methods systematic review protocol.
BMJ Open: 2024 Apr 25, 14(4);e083465
[PubMed:38670609] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Adane B, Kefale B, Damtie Y, Arefaynie M, Addisu E, Dewau R, Mitiku K, Tsega TD, Andualem AA, Awoke M, Asfaw T, Wasihun Y, Yalew M
Male involvement in family planning and its association with knowledge and spouse discussion in Ethiopia: a systematic review and meta-analysis.
BMJ Open: 2024 Apr 25, 14(4);e082094
[PubMed:38670601] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Teranishi A, Ooigawa H, Take Y, Shibata A, Suzuki K, Kurita H
Influence of Perioperative Three-Dimensional CT Angiography and Surgical Clipping for Unruptured Cerebral Aneurysms on Renal Function in Patients with Chronic Kidney Disease.
World Neurosurg: 2024 Apr 24;
[PubMed:38670454] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Dini H, Bruni LE, Ramsøy TZ, Calhoun VD, Sendi MSE
The overlap across psychotic disorders: A functional network connectivity analysis.
Int J Psychophysiol: 2024 Apr 24;112354
[PubMed:38670348] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Schaan K, Hughes P
A comparison of free amino nitrogen and yeast assimilable nitrogen measurement methods for use in alcoholic fermentation of whey.
J Dairy Sci: 2024 Apr 24;
[PubMed:38670337] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu W, Yue Y, Hou X, Han H, Wang W, Lin X
Combined hysteroscopic Bigatti shaver (IBS®) and resectoscope removal of a heterotopic cesarean scar pregnancy in the first trimester.
Fertil Steril: 2024 Apr 24;
[PubMed:38670328] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li M, Guo X, Verma A, Rudkouskaya A, McKenna AM, Intes X, Wang G, Barroso M
Contrast-enhanced photon-counting micro-CT of tumor xenograft models.
Phys Med Biol: 2024 Apr 26;
[PubMed:38670143] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Das U, Saikia S, Biswas R
Highly sensitive biofunctionalized nanostructures for paper-based colorimetric sensing of hydrogen peroxide in raw milk.
Spectrochim Acta A Mol Biomol Spectrosc: 2024 Apr 12, 316;124290
[PubMed:38669984] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rai A, Jha NS, Sharma P, Tiwari S, Subramanian R
Curcumin-derivatives as fluorescence-electrochemical dual probe for ultrasensitive detections of picric acid in aqueous media.
Talanta: 2024 Apr 22, 275;126113
[PubMed:38669958] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Krukiewicz K, Contessotto P, Nedjari S, Martino MM, Redenski I, Gabet Y, Speranza G, O'Brien T, Altankov G, Awaja F
Clinical potential of plasma-functionalized graphene oxide ultrathin sheets for bone and blood vessel regeneration: Insights from cellular and animal models.
Biomater Adv: 2024 Apr 20, 161;213867
[PubMed:38669824] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shirazi HA, Lee S, Ullah S, Almdal K
Structural and tribological studies on the interaction of porcine gastric mucin with non- and cationic-modified β-lactoglobulins.
Colloids Surf B Biointerfaces: 2024 Apr 21, 238;113924
[PubMed:38669751] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lu Y, Mo L, Chen J, Peng W
Perforation of barium sulfate enterography in an infant: A case report.
Medicine (Baltimore): 2024 Apr 26, 103(17);e37926
[PubMed:38669395] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Yang M, Qin F, Zhou Y, Yao Y, Lu Z, Chen W
Evaluation and clinical significance of contrast-enhanced ultrasound on changes in liver blood flow perfusion after TIPS surgery.
Medicine (Baltimore): 2024 Apr 26, 103(17);e37899
[PubMed:38669377] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Shi R, Zhang X, Li C, Zhao Y, Li R, Waterhouse GIN, Zhang T
Electrochemical oxidation of concentrated benzyl alcohol to high-purity benzaldehyde via superwetting organic-solid-water interfaces.
Sci Adv: 2024 Apr 26, 10(17);eadn0947
[PubMed:38669338] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Sarvandian S, Hosseinpour S, Hoseinynejad K, Davasaz Irani R, Pakseresht S, Rahimi Z
Mental health status in healthcare workers during COVID-19 pandemic: An online questionnaire study in the southwest Iran.
PLoS One: 2024, 19(4);e0298058
[PubMed:38669302] [WorldCat.org: ISSN ESSN ] [DOI] ( )

da Silva GD, Silva FN, de Arruda HF, E Souza BC, Costa LDF, Amancio DR
Using full-text content to characterize and identify best seller books: A study of early 20th-century literature.
PLoS One: 2024, 19(4);e0302070
[PubMed:38669247] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mets M, Karjus A, Ibrus I, Schich M
Automated stance detection in complex topics and small languages: The challenging case of immigration in polarizing news media.
PLoS One: 2024, 19(4);e0302380
[PubMed:38669237] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Burgess RC, Nyhan K, Dharia N, Freudenberg N, Ransome Y
Characteristics of commercial determinants of health research on corporate activities: A scoping review.
PLoS One: 2024, 19(4);e0300699
[PubMed:38669229] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ibrahim Y, Zovich B, Ansah B, Freeland C, Jackson M, Tu T, Cohen C
Quality of life of people living with chronic hepatitis B: The role of social support system.
PLOS Glob Public Health: 2024, 4(4);e0003103
[PubMed:38669220] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Paterna A, Alcaraz-Ibáñez M, Aguilar-Parra JM, Salavera C, Demetrovics Z, Griffiths MD
Problematic smartphone use and academic achievement: A systematic review and meta-analysis.
J Behav Addict: 2024 Apr 26;
[PubMed:38669081] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hu L, Wyatt LC, Mohsin F, Lim S, Zanowiak J, Mammen S, Hussain S, Ali SH, Onakomaiya D, Belli HM, Aifah A, Islam NS
Characterizing Technology Use and Preferences for Health Communication in South Asian Immigrants With Prediabetes or Diabetes: Cross-Sectional Descriptive Study.
JMIR Form Res: 2024 Apr 26, 8;e52687
[PubMed:38669062] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Spasova N, Somleva D, Krastev B, Ilieva R, Borizanova A, Svinarov D, Kinova E, Goudev A
Association of the trimethylamine N-oxide with cardiovascular risk and vascular alterations in middle-aged patients with risk factors for cardiovascular diseases.
Biosci Rep: 2024 Apr 26;
[PubMed:38669041] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Suran M, Bucher K
False Health Claims Abound, but Physicians Are Still the Most Trusted Source for Health Information.
JAMA: 2024 Apr 26;
[PubMed:38669040] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Weiniger CF, Brogly N, Lustig A, Van Den Bosch OFC, Kranke P, Lucas N, Morau E, Eklund K, Gunaydin B, Romero CS, Afshari A
Anaesthesia praCtice for Caesarean dElivery Snapshot Study (ACCESS): Protocol and baseline characteristics of registered centres.
Acta Anaesthesiol Scand: 2024 Apr 26;
[PubMed:38669012] [WorldCat.org: ISSN ESSN ] [DOI] ( a) 

PDF

Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151] [WorldCat.org: ISSN ESSN ] [DOI] ( o)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

Retrieved from "http://www2.unil.ch/cbg/index.php?title=ISA&oldid=4619"