ISA

Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

• Microsoft Windows (32 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Microsoft Windows (64 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Mac OSX (Leopard)
  Download and install this file.
• Linux and Unix systems, R source package
  Download this file, save it in a temporary directory, and start R. Install the downloaded package using the install.packages() function: give the full path of the saved file and use the 'repos=NULL' argument of install.packages().

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Chen Z, Yang Z, Li X, Li L, Lin H
Dopamine-modified cobalt spinel nanoparticles as an active catalyst for the acidic oxygen evolution reaction.
Dalton Trans: 2024 May 10;
[PubMed:38726692] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

LaValley MN, Eble DJ, Kuzon WM Jr, Peters BR, Skokan AJ, Ettinger RE, Morrison SD
Making a Statement: Positions of Professional Medical Organizations Towards Gender-Affirming Care.
Ann Surg: 2024 May 10;
[PubMed:38726665] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Otani VHO, Novaes RACB, Pedron J, Nabhan PC, Rodrigues TM, Chiba R, Guedes JVC, Marques LM, Vissoci JRN
Framework proposal for Role-Playing Games as mental health intervention: the Critical Skills methodology.
Front Psychiatry: 2024, 15;1297332
[PubMed:38726380] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Gray T, Harris AB, Patel R, Oni J, Aiyer A
Open Access Publication in Total Ankle Arthroplasty Literature Is Associated With Increased Social Media Attention, but Not Increased Citations.
Foot Ankle Orthop: 2024 Apr, 9(2);24730114241247817
[PubMed:38726322] [WorldCat.org: ISSN ESSN ] [DOI] ( )

McGovern TW
A View from Behind the Microphone During the COVID-19 Pandemic: Lessons Learned.
Linacre Q: 2024 May, 91(2);116-133
[PubMed:38726313] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ajluni V
The Impact of Social Media on Human Flourishing and Mental Health: A Personalist Perspective.
Linacre Q: 2024 May, 91(2);114-115
[PubMed:38726312] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Du F, Zheng S, Shao K, Yang Y, Chen W, Bai X, Hua Y
Specific-CT brain template construction and retrospective dosimetric comparison study in brain for nasopharyngeal carcinoma patients treated with IMRT or VMAT.
Am J Cancer Res: 2024, 14(4);1662-1674
[PubMed:38726278] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bawazir A, Idid SA
The impact of third-person effect on social networking sites privacy risks and protective measures adoption among Yemeni students in Malaysia.
Heliyon: 2024 May 15, 10(9);e30386
[PubMed:38726139] [WorldCat.org: ISSN ESSN ] [DOI] ( )

McCoy Sanders J, Alarcon V, Marquis G, Tabb A, Van Kessel JA, Sonnier J, Haley BJ, Baek I, Qin J, Kim M, Vasefi F, Sokolov S, Hellberg RS
Inactivation of Escherichia coli, Salmonella enterica, and Listeria monocytogenes using the Contamination Sanitization Inspection and Disinfection (CSI-D) device.
Heliyon: 2024 May 15, 10(9);e30490
[PubMed:38726110] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Naseri N, Taleghani F, Hashemi MS, Najimi A
Designing a virtual breast cancer prevention program for Iranian women: A study protocol.
J Educ Health Promot: 2024, 13;93
[PubMed:38726097] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Nell J, Jackson K, Andipatin M
The lived experience of South African men having a premature baby.
Health SA: 2024, 29;2522
[PubMed:38726064] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Riccardo AM, Ferrazzi G, Catellani S, Gibin AM, Nasi AM, Marchi M, Galeazzi GM, Thompson JK, Pingani L
Validation of an adapted Italian-language version of the Sociocultural Attitudes Toward Appearance Questionnaire-3 (SATAQ-3), within a female population: the Sociocultural Attitudes Toward Appearance Questionnaire - Social Media (SATAQ-SM).
Front Psychol: 2023, 14;1193062
[PubMed:38726053] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Glynou SP, Petmeza CA, Georgiannakis A, Sousi S, Zargaran A, Zargaran D, Mosahebi A
Perceptions, awareness and influences of medical students towards plastic surgery: A systematic review.
JPRAS Open: 2024 Jun, 40;320-335
[PubMed:38726047] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Smith SE, Sivertsen N, Lines L, De Bellis A
Exploring social media influences on vaccine decision-making in parents: a netnography.
Ther Adv Vaccines Immunother: 2024, 12;25151355241249607
[PubMed:38726045] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Schuster M, Braun FK, Chiang DM, Ludwig C, Meng C, Grätz C, Kirchner B, Proescholdt M, Hau P, Steinlein OK, Pfaffl MW, Riemenschneider MJ, Reithmair M
Extracellular vesicles secreted by 3D tumor organoids are enriched for immune regulatory signaling biomolecules compared to conventional 2D glioblastoma cell systems.
Front Immunol: 2024, 15;1388769
[PubMed:38726003] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Raturi V, Delashaw J, Dumont A, Wang A
Most influential women neurosurgeons on Twitter.
World Neurosurg X: 2024 Jul, 23;100385
[PubMed:38725977] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ranjous Y, Al Balkhi A, Alnader I, Rkab M, Ataya J, Abouharb R
Knowledge and misconceptions of choking and first-aid procedures among Syrian adults: A cross-sectional study.
SAGE Open Med: 2024, 12;20503121241249399
[PubMed:38725922] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Moellerberndt J, Niebert S, Fey K, Hagen A, Burk J
Impact of platelet lysate on immunoregulatory characteristics of equine mesenchymal stromal cells.
Front Vet Sci: 2024, 11;1385395
[PubMed:38725585] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lorenzo-González MA, Herrero J, Castañeda C
A heritage dataset of soil and water salinity in Bardenas, Spain.
Data Brief: 2024 Jun, 54;110469
[PubMed:38725550] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chan ST, Fried E
Marangoni spreading on liquid substrates in new media art.
PNAS Nexus: 2024 Feb, 3(2);pgae059
[PubMed:38725527] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ren Z, Cheng X, Xu J, Niu T, Long H
Causal associations of cognition, intelligence, education, health and lifestyle factors with cervical spondylosis: a mendelian randomization study.
Front Genet: 2024, 15;1297213
[PubMed:38725482] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Carretti G, Russo P, Manetti M, Marini M
Female blind baseball players against gender discrimination: the "red diamonds" experience.
Front Sports Act Living: 2024, 6;1362664
[PubMed:38725476] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kruszewski A, Cherkashin I, Kruszewski M, Cherkashina E, Zhang X
Hand-to-hand combat in the 21st century-INNOAGON warrior or modern gladiator?-a prospective study.
Front Sports Act Living: 2024, 6;1383665
[PubMed:38725472] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Huang T, Ko C, Paes D, Smeets E, Post M, Smith B
A review on the safety of growth factors commonly used in cultivated meat production.
Compr Rev Food Sci Food Saf: 2024 May, 23(3);e13350
[PubMed:38725377] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Collaton J, Barata P, Morton M, Barton K, Lewis SP
Justice for Women After Sexual Assault: A Critical Interpretive Synthesis.
Trauma Violence Abuse: 2024 May 9;15248380241248411
[PubMed:38725335] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Prior K, Baillie AJ, Newton N, Lee YY, Deady M, Guckel T, Wade L, Rapee RM, Hudson JL, Kay-Lambkin F, Slade T, Chatterton ML, Mihalopoulos C, Teesson MR, Stapinski LA
Web-based intervention for young adults experiencing anxiety and hazardous alcohol use: Study protocol for an 18-month randomized controlled trial.
Addiction: 2024 May 9;
[PubMed:38725272] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Finan CF, Leon P, Midani L, Hill DA, Smidt AC
Social media use among adolescents with acne: A cross-sectional survey study.
Pediatr Dermatol: 2024 May 9;
[PubMed:38725265] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jeong H, Lee E, Han G
Association between mukbang and cookbang viewing and body image perception and BMI in adolescents.
J Health Popul Nutr: 2024 May 9, 43(1);61
[PubMed:38725086] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cai Q, Zhang P, Xie F, Zhang Z, Tu B
Clinical application of high-resolution spiral CT scanning in the diagnosis of auriculotemporal and ossicle.
BMC Med Imaging: 2024 May 9, 24(1);102
[PubMed:38724896] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Selwyn N, Smith G, Andrejevic M, Gu X, O'Neill C
Facing up to Problem Gambling: Tracing the Emergence of Facial Recognition Technology as a means of Enforcing Voluntary Self-Exclusion.
J Gambl Stud: 2024 May 9;
[PubMed:38724824] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fairhurst K, McIntosh SA, Cutress RI, Potter S, Our Citable Collaborators
Current axillary management of patients with early breast cancer and low-volume nodal disease undergoing primary surgery: results of a United Kingdom national practice survey.
Breast Cancer Res Treat: 2024 May 10;
[PubMed:38724821] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sy W, Bhayana M, Lamb AJ
Atopic Dermatitis Disease Education.
Adv Exp Med Biol: 2024, 1447;209-215
[PubMed:38724795] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Rahman E, Webb WR, Rao P, Yu N, Garcia PE, Ioannidis S, Sayed K, Philipp-Dormston WG, Carruthers JD, Mosahebi A
A Systematic Review on the Reinforcement Loop in Aesthetic Medicine and Surgery: The Interplay of Social Media, Self-Perception, and Repeat Procedures.
Aesthetic Plast Surg: 2024 May 9;
[PubMed:38724639] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rosenberger G, Li W, Turunen M, He J, Subramaniam PS, Pampou S, Griffin AT, Karan C, Kerwin P, Murray D, Honig B, Liu Y, Califano A
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis.
Nat Commun: 2024 May 9, 15(1);3909
[PubMed:38724493] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chen D, Yu R, Yu K, Lu R, Zhao H, Jiao J, Yao Y, Zhu J, Wu J, Mu S
Bicontinuous RuO(2) nanoreactors for acidic water oxidation.
Nat Commun: 2024 May 9, 15(1);3928
[PubMed:38724489] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Foster M, Frith H, John M
'I'm still su!c!dal when you're done with the paperwork': an inductive framework thematic analysis of #camhs on TikTok.
J Child Psychol Psychiatry: 2024 May 9;
[PubMed:38724448] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zacharelou A, Major M, van der Meer P, van der Schaaf M, Vloet L, van Mol MMC
Opinions and priorities for an e-health platform: A member consultation from an intensive care patient organisation.
Aust Crit Care: 2024 May 9;
[PubMed:38724410] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tehan PE, Browne K, Matterson G, Cheng AC, Dawson S, Graves N, Johnson D, Kiernan M, Madhuvu A, Marshall C, McDonagh J, Northcote M, O'Connor J, Orr L, Rawson H, Russo P, Sim J, Stewardson AJ, Wallace J, White N, Wilson R, Mitchell BG
Oral care practices and hospital-acquired pneumonia prevention: A national survey of Australian nurses.
Infect Dis Health: 2024 May 8;
[PubMed:38724299] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bullmann T, Kaas T, Ritzau-Jost A, Wöhner A, Kirmann T, Rizalar FS, Holzer M, Nerlich J, Puchkov D, Geis C, Eilers J, Kittel RJ, Arendt T, Haucke V, Hallermann S
Human iPSC-derived neurons with reliable synapses and large presynaptic action potentials.
J Neurosci: 2024 May 9;
[PubMed:38724283] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Copaescu AM, Li L, Blumenthal KG, Trubiano JA
How to Define and Manage Low-Risk Drug Allergy Labels.
J Allergy Clin Immunol Pract: 2024 May, 12(5);1095-1106
[PubMed:38724164] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Chai J, Sun X, Zhu X, Li Q, Huang B, Hu C
A 74-Year-Old Woman With Spontaneous Life-Threatening Bleeding Post Cardiac Surgery.
Chest: 2024 May, 165(5);e143-e146
[PubMed:38724153] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Tippareddy C, Faraji N, Awan OA
The Application of ChatGPT to Enhance Medical Education.
Acad Radiol: 2024 May, 31(5);2185-2187
[PubMed:38724132] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Øyri SF, Wiig S, Tjomsland O
Influence of external assessment on quality and safety in surgery: a qualitative study of surgeons' perspectives.
BMJ Open Qual: 2024 May 8, 13(2);
[PubMed:38724111] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Slade E, Berg L, Dworzynski K, Manchanda R, Guideline Committee
Ovarian cancer: identifying and managing familial and genetic risk-summary of new NICE guidance.
BMJ: 2024 May 9, 385;q807
[PubMed:38724099] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Waigwa S, Bradbury-Jones C, Doos L, Taylor J
Six aspects of female genital mutilation education (SAFE) model: findings from a qualitative study.
BMJ Open: 2024 May 9, 14(5);e077838
[PubMed:38724052] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Duan X, Li J, Li Y, Xu Y, Chao S, Shi Y
Accumulation of typical persistent organic pollutants and heavy metals in bioretention facilities: distribution, risk assessment, and microbial community impact.
Environ Res: 2024 May 7;119107
[PubMed:38723989] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gad MS, Elsherbiny NM, Refat D, Omar N, Ali S, Al-Shabrawey M, Tawfik A
Exploring the role of Müller cells-derived exosomes in diabetic retinopathy.
Microvasc Res: 2024 May 7;104695
[PubMed:38723843] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bhuiyan HA, Khan JM, Kumar D, Banjare MK, Islam R, Rana S, Hoque A, Rahman MM, Kabir SE
Phase separation, aggregation, and complexation of triton-100 and bovine serum albumin mixture: A combined cloud point and UV-visible spectroscopic approaches.
Int J Biol Macromol: 2024 May 7;132184
[PubMed:38723814] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Eales BM, Smith JE, Pouya N, Teran NS, Miller WR, Tam VH
Alternative iron-depleted media for cefiderocol susceptibility testing.
Int J Antimicrob Agents: 2024 May 7;107193
[PubMed:38723696] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tran HCM, Mbemba E, Mourot N, Faltas B, Rousseau A, Lefkou E, Sabbah M, van Dreden P, Gerotziafas G
The procoagulant signature of cancer cells drives fibrin network formation in tumor microenvironment and impacts its quality. Implications in cancer cell migration and the resistance to anticancer agents.
Thromb Res: 2024 Apr 17, 238;172-183
[PubMed:38723522] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kim E, Kim M, Oh MK
Whole-cell bioconversion for producing thymoquinone by engineered Saccharomyces cerevisiae.
Enzyme Microb Technol: 2024 Apr 26, 178;110455
[PubMed:38723387] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Whitlock C, Chang C, Onishchenko R, Joassaint M, Madlambayan E, Oshman L, Frank CJ
Perspectives of adolescents and young adults on cannabis use during pregnancy.
Addict Behav: 2024 May 7, 156;108059
[PubMed:38723313] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang Z, Liew K, Kuijer R, She WJ, Yada S, Wakamiya S, Aramaki E
Differing Content and Language Based on Poster-Patient Relationships on the Chinese Social Media Platform Weibo: Text Classification, Sentiment Analysis, and Topic Modeling of Posts on Breast Cancer.
JMIR Cancer: 2024 May 9, 10;e51332
[PubMed:38723250] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Olajide BR, van der Pligt P, McKay FH
Cultural food practices and sources of nutrition information among pregnant and postpartum migrant women from low- and middle-income countries residing in high income countries: A systematic review.
PLoS One: 2024, 19(5);e0303185
[PubMed:38723007] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Fox D, Coddington R, Levett KM, Scarf V, Sutcliffe KL, Newnham E
Tending to the machine: The impact of intrapartum fetal surveillance on women in Australia.
PLoS One: 2024, 19(5);e0303072
[PubMed:38722999] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Napolitano JM, Srikanth S, Noorai RE, Wilson S, Williams KE, Rosales-Garcia RA, Krueger B, Emerson C, Parker S, Pruitt J, Dango R, Iyer L, Shafi A, Jayawardena I, Parkinson CL, McMahan C, Rennert L, Peng CA, Dean D
SARS-CoV-2 variant introduction following spring break travel and transmission mitigation strategies.
PLoS One: 2024, 19(5);e0301225
[PubMed:38722935] [WorldCat.org: ISSN ESSN ] [DOI] ( )

de Faria LL, Ponich Clementino C, Véras FASE, Khalil DDC, Otto DY, Oranges Filho M, Suzuki L, Bedoya MA
Staging and Restaging Pediatric Abdominal and Pelvic Tumors: A Practical Guide.
Radiographics: 2024 Jun, 44(6);e230175
[PubMed:38722785] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Pahari S, Neehus AL, Trapnell BC, Bustamante J, Casanova JL, Schlesinger LS
Protocol to develop human alveolar macrophage-like cells from mononuclear cells or purified monocytes for use in respiratory biology research.
STAR Protoc: 2024 May 8, 5(2);103061
[PubMed:38722740] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jessiman-Perreault G, Boucher JC, Kim SY, Frenette N, Badami A, Smith HM, Allen Scott LK
The Role of Scientific Research in Human Papillomavirus Vaccine Discussions on Twitter: Social Network Analysis.
JMIR Infodemiology: 2024 May 9, 4;e50551
[PubMed:38722678] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

da Conceição RRP, Queiroz VAV, Simeone MLF, da Silva Araújo DD, do Carmo PHF, de Menezes CB, Figueiredo JEF, de Resende Stoianoff MA
Does sorghum phenolic extract have antifungal effect?
Braz J Microbiol: 2024 May 9;
[PubMed:38722522] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yuan D, Wang L, Lyu P, Zhang Y, Gao J, Liu J
Evaluation of image quality on low contrast media with deep learning image reconstruction algorithm in prospective ECG-triggering coronary CT angiography.
Int J Cardiovasc Imaging: 2024 May 9;
[PubMed:38722507] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Palanisamy J, Almutairi MH, Almutairi BO
Developing new Hydrazine Carbothioamide Molecules for Selective Colorimetric/Fluorometric Detection of Environmentally Essential Hg(2+) and Ag(+) Metal Ions in Mixed Aqueous Media.
J Fluoresc: 2024 May 9;
[PubMed:38722499] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ekanger LA, Shah RK, Porowski ME, Ziolkowski Z, Calello A
Spectroscopic, electrochemical, and kinetic trends in Fe(III)-thiolate disproportionation near physiologic pH.
J Biol Inorg Chem: 2024 May 9;
[PubMed:38722396] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang B, Zhang Z, Guo D, Yan Y, Wang D, Wang H, Lu L, Zhang K, Zhang J, Liu B
A morphology-based integrated teaching mode combining pathology and radiology with the aid of teaching media: A randomized controlled trial.
J Dent Educ: 2024 May 9;
[PubMed:38722295] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Alus L, Houben L, Shaked N, Niazov-Elkan A, Pinkas I, Oron D, Addadi L
Bio-Inspired Crystalline Core-Shell Guanine Spherulites.
Adv Mater: 2024 May 9;e2308832
[PubMed:38722270] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Das S, Walker D, Rajwal S, Lakamana S, Sumner SA, Mack KA, Kaczkowski W, Sarker A
Emerging Trends of Self-Harm Using Sodium Nitrite in an Online Suicide Community: Observational Study Using Natural Language Processing Analysis.
JMIR Ment Health: 2024 May 2, 11;e53730
[PubMed:38722220] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Aguirre A, Hilsabeck R, Smith T, Xie B, He D, Wang Z, Zou N
Assessing the Quality of ChatGPT Responses to Dementia Caregivers' Questions: Qualitative Analysis.
JMIR Aging: 2024 May 6, 7;e53019
[PubMed:38722219] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hawkins D, Patel J
Suicide mortality according to occupation and method of suicide, Massachusetts, 2010-2019.
Am J Ind Med: 2024 May 9;
[PubMed:38722102] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Walsh EI, Sargent GM, Gooyers L, Masters J, Laachir K, Vardoulakis S
How researchers can translate health evidence into books for children.
Health Promot Int: 2024 Jun 1, 39(3);
[PubMed:38722020] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Zhang Y, Li K, Li Y, Mi J, Li C, Li H, Wang L
Charge Redistribution of Lattice-Mismatched Co─Cu(3)P Boosting pH-Universal Water/Seawater Hydrogen Evolution.
Small: 2024 May 9;e2400244
[PubMed:38721969] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chinchan K, Jiajaroen S, Theppitak C, Laksee S, Sukwattanasinitt M, Chainok K
Synthesis, structure and photoluminescence properties of heterometallic-based coordination polymers of trimesic acid.
Acta Crystallogr C Struct Chem: 2024 Jun 1;
[PubMed:38721808] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Špilak A, Brachner A, Friedl HP, Klepe A, Nöhammer C, Neuhaus W
Effects of small extracellular vesicles derived from normoxia- and hypoxia-treated prostate cancer cells on the submandibular salivary gland epithelium in vitro.
Tissue Barriers: 2024 May 9;2347062
[PubMed:38721756] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hall W
Commentary: The Conflict Between Protecting Public Health and Raising Tax Revenue.
Healthc Policy: 2024 Feb, 19(3);29-32
[PubMed:38721731] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ward MC, Delgado Setien P, Konopasky A, Conserve DF
Conceptualizing National Advisory Boards in primary care research: application to the Two in One HIV and COVID screening and testing model.
Prim Health Care Res Dev: 2024 May 9, 25;e26
[PubMed:38721697] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chereka AA, Demsash AW, Butta FW, Shibabaw AA, Gebeyehu CD, Adane D, Limeneh WD, Fentahun AD, Tadesse MN, Kitil GW
Examining students' level of understanding toward COVID-19 and its associated factors in Ethiopia: a systematic review and meta-analysis.
Front Public Health: 2024, 12;1369738
[PubMed:38721537] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ostrowski AK, Zhang J, Breazeal C, Park HW
Promising directions for human-robot interactions defined by older adults.
Front Robot AI: 2024, 11;1289414
[PubMed:38721392] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Angelini F, Gini G, Marino C, Van Den Eijnden R
Social media features, perceived group norms, and adolescents' active social media use matter for perceived friendship quality.
Front Psychol: 2024, 15;1222907
[PubMed:38721319] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Beiner L, Jeong J, Kang DY, Lombardo P, Kang HR, Boehm I
Immediate hypersensitivity reactions to iodinated contrast media despite drug prophylaxis-a comparative retrospective cohort study of breakthrough reactions in Bern (Switzerland) and Seoul (South Korea).
Quant Imaging Med Surg: 2024 May 1, 14(5);3326-3338
[PubMed:38720860] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Nyakurukwa K, Seetharam Y
Sentimental showdown: News media vs. social media in stock markets.
Heliyon: 2024 May 15, 10(9);e30211
[PubMed:38720765] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Thakker JN, Patel K, Dhandhukia P
Instigation of neurosporaxanthin from Rhodococcus ruber O16N isolated from Gulf of Khambhat.
Nat Prod Res: 2024 May 9;1-12
[PubMed:38720660] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shrestha U, Dee ME, Littrell J, Rice JH, Ouma W, Ownley BH, Butler DM
First report of root rot of strawberry caused by Fusarium cugenangense, a member of the F. oxysporum species complex, in Tennessee, USA.
Plant Dis: 2024 May 8;
[PubMed:38720536] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tiwaskar M, Vora A, Tewary K, Prakash A, Tripathi KK, Jain S, Ilambarati, Pandit G, Singh BP
Role of Bilastine in Allergic Rhinitis: A Narrative Review.
J Assoc Physicians India: 2023 Nov, 71(11);58-61
[PubMed:38720498] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Jurivich DA, Van Eck RN, Wood JR, Snustad D, Holloway J, Langendoen D, Hughes M, Galynker B, Brewster S, Manocha GD
A geriatric game to strengthen older adult healthcare delivery and outcomes.
J Am Geriatr Soc: 2024 May 8;
[PubMed:38720422] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Joshi M, Darooka N, Saha S, Dyball S, Sen P, Yaadav P, Javaid M, Kadam E, Shinjo SK, Dey D, Cavagna L, Makol A, Gutiérrez CET, Caballero Uribe CV, Kuwana M, Burmester GR, Ziade N, Wincup C, Andreoli L, Parodis I, Tan AL, Guillemin F, Knitza J, Wang G, Dalbeth N, Velikova T, Gracia-Ramos AE, Nikiphorou E, Day J, Chinoy H, Aggarwal R, Agarwal V, Gupta L, COVAD study group
Listening to patients, for the patients: The COVAD Study-Vision, organizational structure, and challenges.
Int J Rheum Dis: 2024 May, 27(5);e15161
[PubMed:38720408] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Lynch F, Best S, Gaff C, Downie L, Archibald AD, Gyngell C, Goranitis I, Peters R, Savulescu J, Lunke S, Stark Z, Vears DF
Australian public perspectives on genomic newborn screening: which conditions should be included?
Hum Genomics: 2024 May 8, 18(1);45
[PubMed:38720401] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Moore CO, Lashnits E, Lappin M, Hawley J, Breitschwerdt EB
A case of mistaken identity: a systematic review, meta-analysis, and reinvestigation of hemotropic Mycoplasma spp. infection in Ctenocephalides felis (cat flea).
Parasit Vectors: 2024 May 9, 17(1);209
[PubMed:38720359] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Andrew A
Understanding the "Infodemic" Threat: A Case Study of the COVID-19 Pandemic.
Korean J Fam Med: 2024 May 9;
[PubMed:38720234] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hirpara KR, Hinsu AT, Kothari RK
Metagenomic evaluation of peanut rhizosphere microbiome from the farms of Saurashtra regions of Gujarat, India.
Sci Rep: 2024 May 8, 14(1);10525
[PubMed:38720057] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yin H, Bai X, Zhang F, Yang Z
Dual single atomic Ni sites constructing Janus hollow graphene for boosting electrochemical sensing of glucose.
Mikrochim Acta: 2024 May 8, 191(6);314
[PubMed:38720024] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhao QX, Wu C, Tan S, Yang Y, Cui XW, Dietrich CF, Yang B, Xu CL, Gao YY, Xie MX, Wu CJ, Liu LP, Wang XH, Ling-Hu RZ, Wang N, Wang F, Wang XL, Liu GY, Yu XL, Yu J, Cheng ZG, Liang P
Comparing Sonazoid contrast-enhanced ultrasound to contrast-enhanced CT and MRI for differentially diagnosing renal lesions: a prospective multicenter study.
World J Urol: 2024 May 8, 42(1);302
[PubMed:38720010] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Fetisov V
Analysis of numerical modeling of steady-state modes of methane-hydrogen mixture transportation through a compressor station to reduce CO(2) emissions.
Sci Rep: 2024 May 8, 14(1);10605
[PubMed:38719975] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wei T, Wang HL, Tian Y, Xie MS, Guo HM
Enantioselective construction of stereogenic-at-sulfur(IV) centres via catalytic acyl transfer sulfinylation.
Nat Chem: 2024 May 8;
[PubMed:38719944] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mittal T, Chowdhury S, Guhan P, Chelluri S, Manocha D
Towards determining perceived audience intent for multimodal social media posts using the theory of reasoned action.
Sci Rep: 2024 May 8, 14(1);10606
[PubMed:38719904] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Park A, Kim SE, Yu J, Son D, Kim KS, Koh E, Park KS
Cadherin-6 is a novel mediator for the migration of mesenchymal stem cells to glioblastoma cells in response to stromal cell-derived factor-1.
FEBS Open Bio: 2024 May 8;
[PubMed:38719785] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Elhashani S, Glenn M, Raymant M, Schmid MC, Mielgo A
Expression of versican isoforms V0/V1 by pancreatic cancer associated fibroblasts increases fibroblast proliferation.
Pancreatology: 2024 Apr 26;
[PubMed:38719756] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kahlig CI, Moser S, Micutkova L, Grillari J, Kraus B, Hernandez Bort JA
Enhancement of rAAV titers via inhibition of the interferon signaling cascade in transfected HEK293 suspension cultures.
Biotechnol J: 2024 May, 19(5);e2300672
[PubMed:38719621] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Klimpel M, Terrao M, Bräuer M, Dersch H, Biserni M, Melo Do Nascimento L, Schwingal S, Vogel JE, Ferlemann C, Brandt T, Lal NI, Bridgeman K, Petzke A, McDwyer E, Lim JL, Oh S, Brumatti G, Garcia Minambres A, Otte E, Noll T, Pirzas V, Laux H
Generation of stable suspension producer cell lines for serum-free lentivirus production.
Biotechnol J: 2024 May, 19(5);e2400090
[PubMed:38719592] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Binh N, Rebecca R, James K, Becky F, Philayrath P, Helen C, Katharine S, Baur LA, Partridge SR
"What concerns me or what is most interesting to me": A qualitative study about what influences adolescent engagement with public health issues.
Health Promot J Austr: 2024 May 8;
[PubMed:38719529] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yu X, Meng W, Li Y, Luo X
A low-fouling electrochemical biosensor based on BSA hydrogel doped with carbon black for the detection of cortisol in human serum.
Anal Chim Acta: 2024 Jun 8, 1307;342645
[PubMed:38719410] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Zhong Y, Lan M, Chen H, Chen Y, Zhang Y
Comparative efficacy and acceptability of different exercise patterns for reducing cardiovascular events in pre-diabetes: protocol for a systematic review and network meta-analysis of randomised controlled trials.
BMJ Open: 2024 May 7, 14(5);e075783
[PubMed:38719281] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
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1. Kutalik2008NB pmid=18464786 // PDF
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