ISA

Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

• Microsoft Windows (32 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Microsoft Windows (64 bit)
  Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files' and select the saved file.
• Mac OSX (Leopard)
  Download and install this file.
• Linux and Unix systems, R source package
  Download this file, save it in a temporary directory, and start R. Install the downloaded package using the install.packages() function: give the full path of the saved file and use the 'repos=NULL' argument of install.packages().

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Jourdain A, Taviot-Gueho C, Nielsen UG, Prévot V, Forano C
In-depth characterization of phosphate intercalated Mg Al Layered double hydroxides and study of the PO(4) release properties.
Dalton Trans: 2024 May 21;
[PubMed:38771566] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhu H, Szymczyk A, Ghoufi A
Multiscale modelling of transport in polymer-based reverse-osmosis/nanofiltration membranes: present and future.
Discov Nano: 2024 May 21, 19(1);91
[PubMed:38771417] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kovalyov AM, Ismatullin DD, Kokorev DA, Khaliulin AV, Nikitina TR, Lyamin AV
Identification of the Optimal Cultivation Period Required to Isolate Representatives of Mycobacterium abscessus Complex Isolated from Patients with Cystic Fibrosis.
Int J Mycobacteriol: 2024 Jan 1, 13(1);34-39
[PubMed:38771277] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bauer B, Norel R, Leow A, Rached ZA, Wen B, Cecchi G
Using Large Language Models to Understand Suicidality in a Social Media-Based Taxonomy of Mental Health Disorders: Linguistic Analysis of Reddit Posts.
JMIR Ment Health: 2024 May 16, 11;e57234
[PubMed:38771256] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dong S, Chapman SL, Pluen A, Richardson SM, Miller AF, Saiani A
Effect of Peptide-Polymer Host-Guest Electrostatic Interactions on Self-Assembling Peptide Hydrogels Structural and Mechanical Properties and Polymer Diffusivity.
Biomacromolecules: 2024 May 21;
[PubMed:38771115] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Biermann K, Taddicken M
Visible scientists in digital communication environments: An analysis of their role performance as public experts on Twitter/X during the Covid-19 pandemic.
Public Underst Sci: 2024 May 21;9636625241249389
[PubMed:38771041] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ranger BJ, Moerman KM, Feigin M, Herr HM, Anthony BW
3D Ultrasound Shear Wave Elastography for Musculoskeletal Tissue Assessment Under Compressive Load: A Feasibility Study.
Ultrason Imaging: 2024 May 21;1617346241253798
[PubMed:38770999] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chiereghin A, Squillace L, Pizzi L, Sanna T, Bazzani C, Roti L, Mezzetti F
Scelte gestionali per sostenere e migliorare i programmi di screening oncologico.
Epidemiol Prev: 2024 Mar-Apr, 48(2);158-164
[PubMed:38770733] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Sturma A, Boesendorfer A, Gstoettner C, Baumgartner B, Salminger S, Farina D, Brånemark R, Vujaklija I, Hobusch G, Aszmann O
Long-term functional and clinical outcome of combined targeted muscle reinnervation and osseointegration for functional bionic reconstruction in transhumeral amputees: a case series.
J Rehabil Med: 2024 May 21, 56;jrm34141
[PubMed:38770700] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Suhag K, Rauniyar S
Social Media Effects Regarding Eating Disorders and Body Image in Young Adolescents.
Cureus: 2024 Apr, 16(4);e58674
[PubMed:38770510] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Staubach P, Körber A, Trüeb RM, Mann C, von Kiedrowski R
A narrative review of fixed combination calcipotriol/betamethasone aerosol foam (Enstilar(®)) in the management of psoriasis with scalp involvement.
Drugs Context: 2024, 13;
[PubMed:38770372] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Januszka J, Drwiega E, Burgos R, Smith R, Badowski M
Real-world prevalence of integrase inhibitor resistance and virological failure since adoption as guideline-preferred therapy.
Drugs Context: 2024, 13;
[PubMed:38770371] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Clarke LL, Hine B, England D, Flew PPMS, Alzahri R, Juriansz SN, Garcia MJBC
The gendered behaviors displayed by Disney protagonists.
Front Sociol: 2024, 9;1338900
[PubMed:38770351] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yulianto JE, Swastika GLD, Kiling IY
How inter-ethnic relations are reproduced through everyday social practices: A perspective from the Javanese nasi pecel vendors in Mataraman cities.
Heliyon: 2024 May 30, 10(10);e30843
[PubMed:38770336] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Markos A, Tsigilis N
Dimensionality assessment in ordinal data: a comparison between parallel analysis and exploratory graph analysis.
Front Psychol: 2024, 15;1359111
[PubMed:38770253] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zaso MJ, Read JP, Colder CR
Social influences on alcohol outcome expectancy development from childhood to young adulthood: A narrative review.
Curr Addict Rep: 2023 Dec, 10(4);690-701
[PubMed:38770224] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Venetsanaki V, Zisimopoulou E, Zouli C, Boudina M, Gkiouras K, Xirou P, Fotiadou A, Stamati M, Argyropoulou E, Chrisoulidou A
Mönckeberg sclerosis in patients with thyroid papillary carcinoma.
Endocr Oncol: 2024 Jan 1, 4(1);e230047
[PubMed:38770191] [WorldCat.org: ISSN ESSN ] [DOI] ( )

El-Shahawi MS, Alwael H, Alsibaai AA, Hamza A, Algethami FK, Alshareef FM, El-Khouly SH, Eweda N
Sorption Characteristics and Chromatographic Separation of (90)Y(3+) from (90)Sr(2+) from Aqueous Media by Chelex-100 (Anion Ion Exchange) Packed Column.
Int J Anal Chem: 2024, 2024;6232381
[PubMed:38770043] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bassetto R, Amadio E, Ciampanelli F, Perin S, Ilari P, Gaballo P, Callegari M, Feltrin S, Gobbo J, Zanatta S, Bertin W
Designing an effective dissolution test for bilayer tablets tailored for optimal melatonin release in sleep disorder management.
Front Nutr: 2024, 11;1394330
[PubMed:38769992] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Dickinson OB, Roberts ME
Attributions of Sexual Assault: Effects of Victim and Perpetrator Stereotypes, Presentation Order, and Participant Characteristics.
J Interpers Violence: 2024 May 20;8862605241253035
[PubMed:38769885] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Armstrong GM, Hopper KM, Friedman HP, Bilsky SA
Adolescent Sleep Quality and Alcohol Use: An Initial Examination of the Serial Indirect Effects of Anxiety Symptoms and Coping Motives for Alcohol Use.
Subst Use Misuse: 2024 May 20;1-11
[PubMed:38769730] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Griggio TB, de Camargo PSF, Costa ML, Luz AG
Professional activity and experience after a residency training program in ObGyn: A 10-year analysis.
Int J Gynaecol Obstet: 2024 May 20;
[PubMed:38769696] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Galper EF, Widman L, Brasileiro J, Noar SM
Adolescents' pornography viewing frequency and its relationship with condom attitudes.
Sex Health: 2024 May, 21;
[PubMed:38769682] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Valencia J, Bonilla-Correal S, Pinart E, Bonet S, Yeste M
Clustering of spermatozoa examined through flow cytometry provides more information than the conventional assessment: a resilience to osmotic stress example.
Reprod Fertil Dev: 2024 May, 36;
[PubMed:38769680] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Butler LH, Prike T, Ecker UKH
Nudge-based misinformation interventions are effective in information environments with low misinformation prevalence.
Sci Rep: 2024 May 20, 14(1);11495
[PubMed:38769362] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

El-Nagar RA, Nessim MI, Khalil NA, Elewa SI
Experimental and computational studies of novel cyclic ammonium based ionic liquids as corrosion inhibitors for carbon steel in acid medium.
Sci Rep: 2024 May 20, 14(1);11484
[PubMed:38769355] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hand CJ, Ingram J, Glover K, Brodie ZP, Scott GG
Initial tweet valence, abuse volume, and observer Dark Tetrad characteristics influence perceptions of female celebrity abuse on Twitter.
Sci Rep: 2024 May 20, 14(1);11507
[PubMed:38769333] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Salazar OR, Chen K, Melino VJ, Reddy MP, Hřibová E, Čížková J, Beránková D, Arciniegas Vega JP, Cáceres Leal LM, Aranda M, Jaremko L, Jaremko M, Fedoroff NV, Tester M, Schmöckel SM
SOS1 tonoplast neo-localization and the RGG protein SALTY are important in the extreme salinity tolerance of Salicornia bigelovii.
Nat Commun: 2024 May 20, 15(1);4279
[PubMed:38769297] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bendau A, Petzold MB, Ströhle A, Plag J
Viral Transmission? A Longitudinal Study of Media Use and Its Relation to Mental Strain During the First 2 Years of the COVID-19 Pandemic.
Int J Behav Med: 2024 May 20;
[PubMed:38769221] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Samanta P, Cooke SF, McNulty R, Hormoz S, Rosenthal A
ProBac-seq, a bacterial single-cell RNA sequencing methodology using droplet microfluidics and large oligonucleotide probe sets.
Nat Protoc: 2024 May 20;
[PubMed:38769144] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kirschner U, Kahn M, Papukchieva S, Stosio K, Keis A, Biermann MHC, Häusser-Fruh G, Sturm L, Eberl M, Friedrich B, Kurzen H
Diagnostic delay in Hidradenitis suppurativa investigated using data from social media and from statutory health insurances.
J Dtsch Dermatol Ges: 2024 May 20;
[PubMed:38769083] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li M, Wu S, Liu D, Ye Z, Wang L, Kan M, Ye Z, Khan M, Zhang J
Engineering Spatially Adjacent Redox Sites with Synergistic Spin Polarization Effect to Boost Photocatalytic CO(2) Methanation.
J Am Chem Soc: 2024 May 20;
[PubMed:38769050] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Falade IO, Wilson JC, Mehari ME, Soroudi D, Song S, Kim EA
The complexity of online patient education materials for wound care strategies: A readability analysis.
Surgery: 2024 May 19;
[PubMed:38769036] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mason F, Mayer J, O'Toole B, Williamson J, Ross Russell A
How to use podcasts in neurology.
Pract Neurol: 2024 May 20;
[PubMed:38769014] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tian J, Cheng P, Wang X, Xiang H, Gao Q, Zhu H
Exploring home fall events among infants and toddlers using social media information: an infodemiology study in China.
Inj Prev: 2024 May 20;
[PubMed:38768979] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Brodell RT
JAAD Game Changers: "Increased serum leptin and resistin levels and increased carotid intima-media wall thickness in patients with psoriasis: Is psoriasis associated with atherosclerosis?".
J Am Acad Dermatol: 2024 May 18;
[PubMed:38768859] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Williamson T, Sugg M, Singh D, Green S, Runkle JD
Crisis response in Texas youth impacted by Hurricane Harvey: A difference-in-differences analysis.
J Affect Disord: 2024 May 18;
[PubMed:38768821] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu Z, Zhang F, Gao S, Zhang L, Fu Q, Cui S
Neonicotinoid insecticides in paddy fields: Dissipation dynamics, migration, and dietary risk.
Chemosphere: 2024 May 18;142371
[PubMed:38768784] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lakshmi Sadhana S, Priya Dharshini K, Ramya Devi D, Naryanan VHB, Veerapandian B, Luo RH, Yang JX, Shanmugam SR, Ponnusami V, Brzezinski M, Zheng YT
Investigation of Levan-derived Nanoparticles of Dolutegravir: A Promising Approach for the Delivery of anti-HIV Drug as Milk Admixture.
J Pharm Sci: 2024 May 18;
[PubMed:38768757] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ma H, Zhang T
Histone demethylase KDM3B mediates matrix stiffness-induced osteogenic differentiation of adipose-derived stem cells.
Arch Biochem Biophys: 2024 May 18;110028
[PubMed:38768746] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Garrigós V, Vallejo B, Mollà-Martí E, Picazo C, Peltier E, Marullo P, Matallana E, Aranda A
Up-regulation of Retrograde Response in yeast increases glycerol and reduces ethanol during wine fermentation.
J Biotechnol: 2024 May 18;
[PubMed:38768686] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Pasqualotto BA, Nelson A, Deheshi S, Sheldon CA, Vogl AW, Rintoul GL
Impaired mitochondrial morphological plasticity and failure of mitophagy associated with the G11778A mutation of LHON.
Biochem Biophys Res Commun: 2024 May 14, 721;150119
[PubMed:38768545] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhao M, Yang L, Chen F, Zhuang J
Bacterial transport mediated by micro-nanobubbles in porous media.
Water Res: 2024 May 12, 258;121771
[PubMed:38768521] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Palacz-Poborczyk I, Naughton F, Luszczynska A, Januszewicz A, Quested E, Hagger MS, Pagoto S, Verboon P, Robinson S, Kwasnicka D
Choosing Health: acceptability and feasibility of a theory-based, online-delivered, tailored weight loss, and weight loss maintenance intervention.
Transl Behav Med: 2024 May 20;
[PubMed:38768381] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liyanage I, Dassanayaka DARK, Chellapillai FMD, Liyanage E, Rathnayake S, Rikas M, Mayooran S
Manual and ventilator hyperinflation parameters used by intensive care physiotherapists in Sri Lanka: An online survey.
PLoS One: 2024, 19(5);e0297880
[PubMed:38768181] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Wiener RC, Waters C, Bhandari R
A theory of oral healthcare decision-making in Appalachia.
PLoS One: 2024, 19(5);e0303831
[PubMed:38768179] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kramer T, Groh G, Stüben N, Soyka M
Analysis of addiction craving onset through natural language processing of the online forum Reddit.
PLoS One: 2024, 19(5);e0301682
[PubMed:38768143] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Brogly C, Lizotte DJ, Mitchell M, Speechley M, MacDougall A, Huner E, Anderson KK, Bauer MA
An app-based ecological momentary assessment of undergraduate student mental Health during the COVID-19 pandemic in Canada (Smart Healthy Campus Version 2.0): Longitudinal study.
PLOS Digit Health: 2024 May, 3(5);e0000239
[PubMed:38768087] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Tian J, Zhou S, Fan B, Zhang H
A Novel Image Formation Model for Descattering.
IEEE Trans Pattern Anal Mach Intell: 2024 May 20, PP;
[PubMed:38767998] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Haake M, Aldakov D, Pérard J, Veronesi G, Tapia AA, Reuillard B, Artero V
Impact of the Surface Microenvironment on the Redox Properties of a Co-Based Molecular Cathode for Selective Aqueous Electrochemical CO(2)-to-CO Reduction.
J Am Chem Soc: 2024 May 20;
[PubMed:38767986] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhu J, Jin R, Kenne DR, Phan N, Ku WS
User Dynamics and Thematic Exploration in r/Depression During the COVID-19 Pandemic: Insights From Overlapping r/SuicideWatch Users.
J Med Internet Res: 2024 May 20, 26;e53968
[PubMed:38767953] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Liu C, Gao C, Song L, Li X, Chen X, Wu J, Song W, Wei W, Liu L
Fine-Tuning Pyridoxal 5'-Phosphate Synthesis in Escherichia coli for Cadaverine Production in Minimal Culture Media.
ACS Synth Biol: 2024 May 20;
[PubMed:38767944] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ma H, Collins MKR, Ritchie C, Galper EF, Sheeran P, Sutfin E, Noar SM
How Do Behavioral Framing, Linguistic Certainty, and Target Specification Impact Responses to Vaping Prevention Messages?
J Health Commun: 2024 May 20;1-12
[PubMed:38767865] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Fickweiler W, Chokshi T, Jangolla S, Mitzner M, Wu IH, Park H, Park K, Aiello LP, Sun J, King GL
CLINICAL CHARACTERIZATION OF AQUEOUS AND VITREOUS RETINOL-BINDING PROTEIN 3 CONCENTRATIONS IN RELATION TO DIABETIC RETINOPATHY SEVERITY, RETINAL STRUCTURES, AND SYSTEMIC COMPLICATIONS.
Retina: 2024 Jun 1, 44(6);1026-1033
[PubMed:38767850] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Geng A, Zhang C, Wang J, Zhang X, Qiu W, Wang L, Xi J, Yang B
Current advances of chlorinated organics degradation by bioelectrochemical systems: a review.
World J Microbiol Biotechnol: 2024 May 20, 40(7);208
[PubMed:38767676] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Klerx SP, Bruijn SM, Coppieters MW, Kiers H, Twisk JWR, Pool-Goudzwaard AL
Differences in the organization of the primary motor cortex in people with and without low back pain and associations with motor control and sensory tests.
Exp Brain Res: 2024 May 20;
[PubMed:38767666] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Koiek S, Brandt C, Möller S, Dillon H, Neher T
Masked speech recognition by 6-13-year-olds with early-childhood otitis media: effects of acoustic condition and otologic history.
Int J Audiol: 2024 May 20;1-8
[PubMed:38767554] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ferren MD
A Call for Nurses to Become Media Competent: An Interview With Barbara Glickstein.
J Nurs Adm: 2024 Jun 1, 54(6);324-326
[PubMed:38767523] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Wang H, Lan Y, Chen C, Yang L, Sun J, Zeng Y, Wu J
LPS and ATP-induced Death of PMA-differentiated THP-1 Macrophages and its Validation.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767387] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Guo C, Wen J, Sun Y, Liang G, Wang Z, Pan L, Huang J, Liao Y, Wang Z, Chen Q, Mu P, Deng Y
Pyrroloquinoline quinone production defines the ability of Devosia species to degrade deoxynivalenol.
Food Funct: 2024 May 20;
[PubMed:38767386] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Caso R, Khaitan PG
Surgical Management of Persistent or New Symptoms After Hiatal Hernia Repair.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767385] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Moreno-Loshuertos R, Fernández-Silva P
Isolation of Mitochondria for Mitochondrial Supercomplex Analysis from Small Tissue and Cell Culture Samples.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767381] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhang H, Zhu T, Luo Y, Xu R, Li G, Hu Z, Cao X, Yao J, Chen Y, Zhu Y, Wu K
Embedded Bioprinting of Tissue-like Structures Using κ-Carrageenan Sub-Microgel Medium.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767380] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Perez-Pedroza R, Moretti M, Hauser CAE
Fabrication and Characterization of Colorectal Cancer Organoids from SW1222 Cell Line in Ultrashort Self-Assembling Peptide Matrix.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767378] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mancinelli L, Schoedel KE, Weiss KR, Intini G
Methods to Enable Spatial Transcriptomics of Bone Tissues.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767376] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Liang R, Mess G, Punnoose J, Kempski Leadingham KM, Smit C, Thakor N, Habela CW, Tyler B, Salimpour Y, Manbachi A
Focused Ultrasound Neuromodulation of Human In Vitro Neural Cultures in Multi-Well Microelectrode Arrays.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767374] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Qian L, Yan J, Chen S, Abbas Karekad MM, Wu Y, Wu X, Xu X, Zhang X
Isolation and Culture of Primary Human Mammary Epithelial Cells.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767371] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhang T, Dhamotharan V, Xiao Y, Ballengee S, Pollon J, Gittes GK
A Streamlined and Standardized Procedure for Generating High-Titer, High-Quality Adeno-Associated Virus Vectors Utilizing a Cell Factory Platform.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767370] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang B, Xu YZ, Zhou YC, Ha S, Qin XS, Cai J, Cong B, Chen JH, Deng JQ
DNA Extraction and Comparison between Old and Fresh Necrophilic Fly Samples.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767369] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Elingaard-Larsen LO, Whytock KL, Divoux A, Hopf M, Kershaw EE, Justice JN, Goodpaster BH, Lane NE, Sparks LM
Isolation of Nuclei from Human Intermuscular Adipose Tissue and Downstream Single-Nuclei RNA Sequencing.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767365] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang Y, Han Y, Han Y
Purification and Characterization of Extracellular Vesicles from Human Adipose-Derived Mesenchymal Stem Cells.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767363] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Han J, Wang Z, Dong Y, Zou X, Wang H, Chen Y, Abdalbary SA, Tu T, Lu H
Regulating Schwann Cell Growth by Nanosecond Pulsed Electric Field for Peripheral Nerve Regeneration In Vitro.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767361] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yang W, Liu HL, Lu SS, Fan PX, Yi W, Ji XL
Acupoint Catgut Embedding for Treatment of Chronic Pelvic Pain due to the Sequelae of Pelvic Inflammatory Disease.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767359] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Paterson CA, Weatherston D, Teeples T, Vargis E
Isolation of Primary Porcine Retinal Pigment Epithelial Cells for In Vitro Modeling.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767357] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tong Q, Raele R, Bergen D, Hammond C
Zebrafish Scale Regeneration In Toto and Ex Vivo Culture of Scales.
J Vis Exp: 2024 May 3, (207);
[PubMed:38767351] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hartson KR, Della LJ, King KM, Liu S, Chatman JM, Rhodes RE
A Web-Based Intervention for Insufficiently Active College Students: Feasibility and Preliminary Efficacy.
West J Nurs Res: 2024 May 20;1939459241253218
[PubMed:38767319] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang N, Ma Q, Zhang X, Huang Q
Implicit theories of health predict HPV vaccination intention among young adult Chinese women: The mediating effect of consideration of future consequences and future self-continuity.
J Health Psychol: 2024 May 20;13591053241253065
[PubMed:38767276] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mullens BG, Marlton FP, Nicholas MK, Permana AJ, Avdeev M, Mukherjee S, Vaitheeswaran G, Li C, Liu J, Chater PA, Kennedy BJ
Seeing the Unseen: The Structural Influence of the Lone Pair Electrons in PbWO(4).
Inorg Chem: 2024 May 20;
[PubMed:38767205] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Dugershaw-Kurzer B, Bossart J, Buljan M, Hannig Y, Zehnder S, Gupta G, Kissling VM, Nowak-Sliwinska P, van Beijnum JR, Griffioen AW, Masjosthusmann S, Zühr E, Fritsche E, Hornung R, Rduch T, Buerki-Thurnherr T
Nanoparticles Dysregulate the Human Placental Secretome with Consequences on Angiogenesis and Vascularization.
Adv Sci (Weinh): 2024 May 20;e2401060
[PubMed:38767187] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Singh S, Nguyen T, Deleemans J, Oberoi D, Piedalue KA, Carlson LE
A Phenomenological Qualitative Exploration of Mind-Body Therapy Use and Effectiveness Among Young, Middle, and Older Adult Cancer Survivors.
Integr Cancer Ther: 2024 Jan-Dec, 23;15347354241253847
[PubMed:38767143] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Alghamdi R, Alamoudi W, Daggag W, Bokhary A, Zelai N
Minoxidil nanoliposomes as a hair growth stimulator and a scalp disinfectant.
Pak J Pharm Sci: 2024 Mar, 37(2);399-404
[PubMed:38767107] [WorldCat.org: ISSN ESSN ] ( p)

Paquin V, Guay E, Moderie C, Paradis C, Nahiddi N, Philippe FL, Geoffroy MC
Psychotic-like experiences and associated factors in resident physicians: A Canadian cross-sectional study.
Early Interv Psychiatry: 2024 May 20;
[PubMed:38767000] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ruamcharoen B
Tropicalizing the Portable Radio: Electronics and the U.S. Military's Battle against Fungi in the Pacific War.
Technol Cult: 2024, 65(2);497-529
[PubMed:38766959] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Drummond N, Miller A, Kramer M, Zielinski R
Social Media and Nutritional Guidelines in Pregnancy.
J Midwifery Womens Health: 2024 May 20;
[PubMed:38766882] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lapinova J, Balaz M, Balazova L, Csaderova L, Golias T, Zatovicova M, Heeren J, Pastorekova S, Takacova M
Unlocking the paracrine crosstalk: adipocyte-derived factors affect carbonic anhydrase IX expression in colon and breast cancer cells.
Neoplasma: 2024 Apr, 71(2);164-179
[PubMed:38766857] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Woszczyk D, Płonka M, Różańska M, Miedziaszczyk M, Idasiak-Piechocka I
Hypertensive emergency due to a delayed dialysis modality transition in a patient with familial hypomagnesemia with hypercalciuria and nephrocalcinosis: a case report.
Eur Rev Med Pharmacol Sci: 2024 May, 28(9);3313-3317
[PubMed:38766789] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Zhang Q, Halle JL, Counts BR, Carson JA
mTORC1 and BMP-Smad1/5 Regulation of Serum-Stimulated Myotube Hypertrophy: A Role for Autophagy.
Am J Physiol Cell Physiol: 2024 May 20;
[PubMed:38766767] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Knock M, Carpenter DM, Thomas KC, Lee C, Adjei A, Lowery J, Coyne I, Garcia N, Sleath B
Disseminating a health information website to teens using a three-pronged approach with social media outreach.
PEC Innov: 2024 Dec, 4;100288
[PubMed:38766572] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lastyautari I, Fahlevi Rizal M, Fauziah E
A comparison between clinical and digital images with various resolutions to evaluate glass ionomer cement restoration on primary teeth.
Saudi Dent J: 2024 May, 36(5);804-809
[PubMed:38766284] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Richie TG, Wiechman H, Ingold C, Heeren L, Kamke A, Pogranichniy S, Monk K, Summers T, Ran Q, Sarkar S, Plattner BL, Sidebottom AM, Chang E, Lee STM
Eubacterium rectale detoxification mechanism increases resilience of the gut environment.
bioRxiv: 2024 May 9;
[PubMed:38766022] [DOI] ( e)

Rivera-Pousa A, Otero-Mato JM, Montes-Campos H, Méndez-Morales T, Diddens D, Heuer A, Varela LM
Ternary Solid Polymer Electrolytes at the Electrochemical Interface: A Computational Study.
Macromolecules: 2024 May 14, 57(9);3921-3936
[PubMed:38765500] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Morsy SA, Tawfik AM, Badayyan SY, Shaikh LK, AzizKhan S, Zakari AA
Assessment of the Level of Knowledge About Risk Factors, Prevention, and Treatment of Gestational Diabetes Mellitus in a Community Sample From Saudi Arabia.
Cureus: 2024 Apr, 16(4);e58435
[PubMed:38765423] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Khired ZA, Zogel B, Darraj H, Asiri RK, Hennawi YB, Alhazmi SM
Community Awareness About Developmental Dysplasia of the Hip (DDH) in the Western and Southern Regions of Saudi Arabia.
Cureus: 2024 Apr, 16(4);e58442
[PubMed:38765418] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Algaadi SA, Aldhafiri HJ, Alsubhi RS, Almakrami M, Aljamaan NH, Almulhim YA
The Saudi Population's Knowledge and Attitude Towards Human Papillomavirus (HPV) Infection and Its Vaccination.
Cureus: 2024 Apr, 16(4);e58427
[PubMed:38765415] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kalinowski J, Hintz EA, Izeogu C
The Untapped Power of "We Don't Know": Epistemological Humility in the Era of COVID-19.
J Patient Exp: 2024, 11;23743735241252475
[PubMed:38765222] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sreepadmanabh M, Arun AB, Bhattacharjee T
Design approaches for 3D cell culture and 3D bioprinting platforms.
Biophys Rev (Melville): 2024 Jun, 5(2);021304
[PubMed:38765221] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chong GPL, de Kloet J
Be strong, be confident: the rise of China and the 2022 Beijing Winter Games.
InterAsia Cult Stud: 2024, 25(3);322-347
[PubMed:38765180] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Koňuchová M, Boháčiková A, Valík Ľ
Characterisation of the surface growth of Mucor circinelloides in cheese agar media using predictive mathematical models.
Heliyon: 2024 May 15, 10(9);e30812
[PubMed:38765159] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mahmoudi K, Farzadkia M, Rezaei Kalantary R, Sobhi HR, Yeganeh M, Esrafili A
Efficient removal of oxytetracycline antibiotic from aqueous media using UV/g-C(3)N(4)/Fe(3)O(4) photocatalytic process.
Heliyon: 2024 May 15, 10(9);e30604
[PubMed:38765134] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Shafiq A, Sindhu TN, Riaz MB, Hassan MKH, Abushal TA
A statistical framework for a new Kavya-Manoharan Bilal distribution using ranked set sampling and simple random sampling.
Heliyon: 2024 May 15, 10(9);e30762
[PubMed:38765132] [WorldCat.org: ISSN ESSN ] [DOI] ( )

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