ISA
Large sets of data, like expression profile from many samples, require
analytic tools to reduce their complexity.
The Iterative Signature Algorithm (ISA) was designed to reduce the
complexity of very large sets of data by decomposing it into so-called
"modules". In the context of gene expression data these modules consist of
subsets of genes that exhibit a coherent expression profile only over a
subset of microarray experiments. Genes and arrays may be attributed to
multiple modules and the level of required coherence can be varied resulting
in different "resolutions" of the modular mapping. Since the ISA does not
rely on the computation of correlation matrices (like many other tools), it
is extremely fast even for very large datasets.
Contents
Software for Gene expression data
We developed the eisa
GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.
Requirements, download and installation
To use eisa
you will need a working GNU R installation.
As of the 23rd of April, 2010, the eisa
package is an official BioConductor package.
eisa
depends on a number of other R packages: isa2
, Biobase
, AnnotationDbi
, Category
, genefilter
, DBI
. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in
source("http://bioconductor.org/biocLite.R") biocLite("eisa")
at your R prompt. See the eisa package page at the BioConductor website for details.
Alternatively, you can also download the package from here:
- Microsoft Windows (32 bit)
Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files
' and select the saved file. - Microsoft Windows (64 bit)
Download this file, save it in a temporary directory, and then start R. From the Packages menu choose 'Install packages from local zip files
' and select the saved file. - Mac OSX (Leopard)
Download and install this file. - Linux and Unix systems, R source package
Download this file, save it in a temporary directory, and start R. Install the downloaded package using theinstall.packages()
function: give the full path of the saved file and use the 'repos=NULL
' argument ofinstall.packages()
.
License
The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.
Software for any tabular data
The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2
R package for such an analysis.
Requirements
No additional R package is required to install and use isa2
. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential
package.
Installation
The isa2
package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in
install.packages("isa2")
at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.
License
The isa2
package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.
Tutorials
The Iterative Signature Algorithm for Gene Expression Data
Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML
PDF
Rnw
R code
ISA and the biclust package
The biclust
package implements several biclustering algorithms. It is possible to convert the results of biclust
to transcription modules and vice-versa.
HTML
PDF
Rnw
R code
Tissue specific expression with the Iterative Signature Algorithm
Hierarchical module trees
A module tree is the hierarchical modular organization of a data set.
HTML
PDF
Rnw
R code
The Iterative Signature Algorithm
Tutorial for the analysis of tabular data with the isa2
R package.
HTML
PDF
Rnw
R code
Running ISA in parallel
Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi
and snow
R packages.
HTML
PDF
Rnw
R code
ISA internals
Matlab package
You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.
Papers
Custers PA, Beets GL, Bach SP, Blomqvist LK, Figueiredo N, Gollub MJ, Martling A, Melenhorst J, Ortega CD, Perez RO, Smith JJ, Lambregts DMJ, Beets-Tan RGH, Maas M
An International Expert-Based Consensus on the Definition of a Clinical Near-Complete Response After Neoadjuvant (Chemo)radiotherapy for Rectal Cancer.
Dis Colon Rectum: 2024 Jun 1, 67(6);782-795
[PubMed:38701503]
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[DOI]
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Gavassino L, Disconzi M, Noronha J
Dispersion Relations Alone Cannot Guarantee Causality.
Phys Rev Lett: 2024 Apr 19, 132(16);162301
[PubMed:38701454]
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[DOI]
( p)
Arnone AA, Wilson AS, Soto-Pantoja DR, Cook KL
Diet modulates the gut microbiome, metabolism, and mammary gland inflammation to influence breast cancer risk.
Cancer Prev Res (Phila): 2024 May 3;
[PubMed:38701438]
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[DOI]
( a)
Hu R, Xia L, Shi C, Zhou Y, Guo X
Otitis media with effusion in preschool children with adenoid hypertrophy: Risk factors and nursing care.
Nurs Open: 2024 May, 11(5);e2165
[PubMed:38701327]
[WorldCat.org:
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[DOI]
( p)
Worku KM, Araya D, Tesfa H, Birru EM, Hailu A, Aemero M
In vitro antileishmanial activities of hydro-methanolic crude extracts and solvent fractions of Clematis simensis fresen leaf, and Euphorbia abyssinica latex.
Medicine (Baltimore): 2024 May 3, 103(18);e38039
[PubMed:38701291]
[WorldCat.org:
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[DOI]
( p)
Okamoto N, Seiyama A, Hori S, Takahashi S
Role of the left posterior middle temporal gyrus in shape recognition and its reconstruction during drawing: A study combining transcranial magnetic stimulation and functional near infrared spectroscopy.
PLoS One: 2024, 19(5);e0302375
[PubMed:38701103]
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[DOI]
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Muhi S, Buultjens AH, Porter JL, Marshall JL, Doerflinger M, Pidot SJ, O'Brien DP, Johnson PDR, Lavender CJ, Globan M, McCarthy J, Osowicki J, Stinear TP
Mycobacterium ulcerans challenge strain selection for a Buruli ulcer controlled human infection model.
PLoS Negl Trop Dis: 2024 May 3, 18(5);e0011979
[PubMed:38701090]
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[DOI]
( a)
Adedokun ST, Yaya S
Prevalence of oral rehydration solution use and its determinants in the treatment of diarrhea among under-five children in sub-Saharan Africa.
PLoS One: 2024, 19(5);e0303193
[PubMed:38701083]
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[DOI]
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Teney C, Pietrantuono G, Wolfram T
What polarizes citizens? An explorative analysis of 817 attitudinal items from a non-random online panel in Germany.
PLoS One: 2024, 19(5);e0302446
[PubMed:38701079]
[WorldCat.org:
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[DOI]
( )
Keleynikov M, Cohen N, Benatov J
Maternal distress during the COVID-19 outbreak: A socio-ecological perspective.
PLoS One: 2024, 19(5);e0302266
[PubMed:38701039]
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[DOI]
( )
Stenner K, Edwards J, Mills L, Sherrington S, Mold F
Delegation of insulin administration: a survey of community nursing teams in England.
Br J Community Nurs: 2024 May 2, 29(5);238-244
[PubMed:38701013]
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[DOI]
( p)
Margarita V, Carboni G, Fiori PL, Rappelli P
The presence of Trichomonas vaginalis in urogenital samples can affect the sensitivity of Mycoplasma hominis identification techniques, leading to an underestimation of bacterial infections.
New Microbiol: 2024 May, 47(1);103-106
[PubMed:38700890]
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( p)
Le YH, Ikawa K, Hoang HTT, Isomura H, Khong DT, Nguyen TN, Que TA, Pham DT, Tanaka K, Yamamoto Y
Abundance of Colistin-Resistance Genes in Retail Meats in Vietnam.
Foodborne Pathog Dis: 2024 May 3;
[PubMed:38700849]
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[DOI]
( a)
Geurts SM, Vossen HGM, Van den Eijnden RJJM, Koning IM
Bidirectional Within-Family Effects of Restrictive Mediation Practices and Adolescents' Problematic Social Media Use.
J Youth Adolesc: 2024 May 3;
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( a)
Sato T, Ogihara Y, Kitagawa K, Ogura T, Yamada N, Dohi K
Diagnostic performance of fluoroscopic video analysis for pulmonary embolism: a prospective observational study.
Int J Cardiovasc Imaging: 2024 May 3;
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[DOI]
( a)
Ali MS, Roy VC, Park JS, Haque AR, Mok JH, Zhang W, Chun BS
Protein and Polysaccharide Recovery from Shrimp Wastes by Natural Deep Eutectic Solvent Mediated Subcritical Water Hydrolysis for Biodegradable Film.
Mar Biotechnol (NY): 2024 May 3;
[PubMed:38700616]
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[DOI]
( a)
Lima VH, Matugawa AT, Mascarin GM, Fernandes ÉKK
Complex nitrogen sources from agro-industrial byproducts: impact on production, multi-stress tolerance, virulence, and quality of Beauveria bassiana blastospores.
Microbiol Spectr: 2024 May 3;e0404023
[PubMed:38700331]
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[DOI]
( a)
Wilson IM, Willoughby B, Tanyos A, Graham K, Walker M, Laslett AM, Ramsoomar L
A global review of the impact on women from men's alcohol drinking: the need for responding with a gendered lens.
Glob Health Action: 2024 Dec 31, 17(1);2341522
[PubMed:38700277]
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[DOI]
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A decade of amplifying your voice.
Vet Rec: 2024 May 4, 194(9);362
[PubMed:38700197]
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[DOI]
( p)
Sohn SY, Inoue K, Bashir MT, Currier JW, Neverova NV, Ebrahimi R, Rhee CM, Lee ML, Leung AM
Thyroid Dysfunction Risk After Iodinated Contrast Media Administration: A Prospective Longitudinal Cohort Analysis.
J Clin Endocrinol Metab: 2024 May 3;
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[DOI]
( a)
Singha R, Maity P, Samanta D
Chiral Induction in a Self-Assembled Pd4 Coordination Cage with Chiral Guests.
Chemistry: 2024 May 3;e202401013
[PubMed:38700019]
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[DOI]
( a)
Ou J, Cui W, Zhao Y, Tang Y, Williams A, Wasalathanthri D, Xu J, Lee J, Borys MC, Khetan A
Use of spectroscopic process analytical technology for rapid quality evaluation during preparation of CHO cell culture media.
Biotechnol Prog: 2024 May 3;e3477
[PubMed:38699906]
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[DOI]
( a)
Jing Z, Feng X, Li X, Zhang X, Pan C
Vaspin facilitates the proliferation and osteogenic differentiation of periodontal ligament stem cells.
J Periodontal Res: 2024 May 3;
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[DOI]
( a)
Hong Y, Lee N, Kirkpatrick CE, Hu S, Lee S, Hinnant A
"Trust Me, I'm a Doctor." How TikTok Videos from Different Sources Influence Clinical Trial Participation.
Health Commun: 2024 May 3;1-12
[PubMed:38699819]
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[DOI]
( a)
Constante Catuto MP, Tigrero-Vaca J, Villavicencio-Vasquez M, Montoya DC, Cevallos JM, Coronel-León J
Evaluation of stress tolerance and design of alternative culture media for the production of fermentation starter cultures in cacao.
Heliyon: 2024 Apr 30, 10(8);e29900
[PubMed:38699711]
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[DOI]
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Yang F, Guo Q, Ma J
A neuron model with nonlinear membranes.
Cogn Neurodyn: 2024 Apr, 18(2);673-684
[PubMed:38699608]
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[DOI]
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Chipako I, Singhal S, Hollingsworth B
Impact of sexual and reproductive health interventions among young people in sub-Saharan Africa: a scoping review.
Front Glob Womens Health: 2024, 5;1344135
[PubMed:38699461]
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[DOI]
( )
Feng B
Gaming with health misinformation: a social capital-based study of corrective information sharing factors in social media.
Front Public Health: 2024, 12;1351820
[PubMed:38699427]
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[DOI]
( )
He L, Chen X, Hu J, Meng Y, Zhang Y, Chen W, Fan Y, Li T, Fang J
Score based on contrast-enhanced ultrasound predict central lymph node metastasis in papillary thyroid cancer.
Front Endocrinol (Lausanne): 2024, 15;1336787
[PubMed:38699389]
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[DOI]
( )
Anand S, Fusco A, Günday C, Günday-Türeli N, Donnarumma G, Danti S, Moroni L, Mota C
Tunable ciprofloxacin delivery through personalized electrospun patches for tympanic membrane perforations.
Bioact Mater: 2024 Aug, 38;109-123
[PubMed:38699239]
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[DOI]
( )
Gary S, Landry M, Bloom S
Spectral and Electrochemical Properties of Common Photocatalysts in Water: A Compendium for Aqueous Photoredox Catalysis.
Synlett: 2023 Oct, 34(16);1911-1914
[PubMed:38699236]
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[DOI]
( o)
Clemons EK, Savin A, Schreieck M, Teilmann-Lock S, Trzaskowski J, Waran R
A face of one's own: The role of an online personae in a digital age and the right to control one's own online personae in the presence of digital hacking.
Electron Mark: 2024, 34(1);31
[PubMed:38699202]
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[DOI]
( o)
Koshy P, Furian L, Nickerson P, Zaza G, Haller M, de Vries APJ, Naesens M
European Survey on Clinical Practice of Detecting and Treating T-Cell Mediated Kidney Transplant Rejection.
Transpl Int: 2024, 37;12283
[PubMed:38699173]
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[DOI]
( )
Heston TF
Critical Gaps in Medical Research Reporting by Online News Media.
Cureus: 2024 Apr, 16(4);e57457
[PubMed:38699087]
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[DOI]
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Shankar Havaldar K, Thoyalil M, Sathyaprasad S, Zaheer A, Belchada DK, Puthukkulangara A
A Comparative Evaluation of the Periodontal Ligament Cell Viability Using Placentrex, Propolis, and Hanks' Balanced Salt Solution: An In-Vitro Study.
Cureus: 2024 Apr, 16(4);e57454
[PubMed:38699086]
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[DOI]
( )
Beard JH, Raissian R, Roberts L, Partain L, Midberry J, Walker T, Trombley S, MacMillan J, Morrison CN
Systematic disparities in reporting on community firearm violence on local television news in Philadelphia, PA, USA.
Prev Med Rep: 2024 Jun, 42;102739
[PubMed:38699078]
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[DOI]
( )
Lin HH, Lin KH, Tsai YL, Chen RJ, Lin YC, Chen YC
Influences of Ipomoea batatas Anti-Cancer Peptide on Tomato Defense Genes.
Curr Protein Pept Sci: 2024 May 2;
[PubMed:38698748]
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[DOI]
( a)
Kumar V, Tolosa M, Ge X, Rao G
Reinventing shake flask fermentation: The breathable flask.
Biotechnol Bioeng: 2024 May 3;
[PubMed:38698719]
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[DOI]
( a)
Carreño-Campos C, Villegas E, Villarreal ML, Morales-Aguilar M, Govea-Alonso D, Romero-Maldonado A, Jimenez-Capdeville ME, Rosales-Mendoza S, Ortiz-Caltempa A
Statistical Experimental Designs for cLTB-Syn Vaccine Production Using Daucus carota Cell Suspension Cultures.
Planta Med: 2024 May 2;
[PubMed:38698590]
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[DOI]
( a)
Munzer TG, Miller AL, Weeks HM, Kaciroti N, Radesky J
Greater mobile device-prompted phone pickups are associated with daily parent stress.
Acta Paediatr: 2024 May 2;
[PubMed:38698532]
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[DOI]
( a)
Wang H, Zhang X, Zhang W, Sun H
The effects of exosomes originating from different cell sources on the differentiation of bone marrow mesenchymal stem cells into schwann cells.
J Nanobiotechnology: 2024 May 3, 22(1);220
[PubMed:38698449]
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[DOI]
( e)
Mao T, Zhao X, Jiang K, Yang J, Xie Q, Fu J, Du B, Lei Z, Gao F
Evaluation of TikTok videos on acute pancreatitis: content quality and reliability analysis.
BMC Public Health: 2024 May 2, 24(1);1216
[PubMed:38698404]
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[DOI]
( e)
D'Alfonso A, De Carolis F, Serva A, Valiyeva S, Guido M, Pietroletti R
Haemorrhoidal disease in pregnancy: results from a self-assessment questionnaire administered by means of a social network.
BMC Gastroenterol: 2024 May 2, 24(1);150
[PubMed:38698334]
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[DOI]
( e)
Purhonen R, Atanasova NS, Salokas J, Duplissy J, Loikkanen E, Maunula L
A Pilot Study of Aerosolization of Infectious Murine Norovirus in an Experimental Setup.
Food Environ Virol: 2024 May 2;
[PubMed:38698288]
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[DOI]
( a)
Yang L, Ma XZ, Su H, Zhang J, Sheng JQ, Jin P
Safe and effective hybrid endoscopic submucosal dissection with ALL IN ONE snare in porcine gastric model (with video).
Sci Rep: 2024 May 2, 14(1);10060
[PubMed:38698246]
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[DOI]
( e)
Mangalik S, Eichstaedt JC, Giorgi S, Mun J, Ahmed F, Gill G, V Ganesan A, Subrahmanya S, Soni N, Clouston SAP, Schwartz HA
Robust language-based mental health assessments in time and space through social media.
NPJ Digit Med: 2024 May 2, 7(1);109
[PubMed:38698174]
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[DOI]
( e)
Patel AA, Weber PC, Levi JR
The effect of tympanostomy tubes on otoacoustic emissions.
Eur Arch Otorhinolaryngol: 2024 May 2;
[PubMed:38698162]
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[DOI]
( a)
Lai C, Toriumi F, Yoshida M
A multilingual analysis of pro Russian misinformation on Twitter during the Russian invasion of Ukraine.
Sci Rep: 2024 May 2, 14(1);10155
[PubMed:38698157]
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[DOI]
( e)
Shoshani A, Kor A, Bar S
The impact of social media use on psychiatric symptoms and well-being of children and adolescents in the Post-COVID-19 era: a four-year longitudinal study.
Eur Child Adolesc Psychiatry: 2024 May 2;
[PubMed:38698136]
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[DOI]
( a)
Hu J, Lai Y, Yi X
Effectiveness of social media-assisted course on learning self-efficacy.
Sci Rep: 2024 May 2, 14(1);10112
[PubMed:38698034]
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[DOI]
( e)
Istrate R, Tulus V, Grass RN, Vanbever L, Stark WJ, Guillén-Gosálbez G
The environmental sustainability of digital content consumption.
Nat Commun: 2024 May 2, 15(1);3724
[PubMed:38697974]
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[DOI]
( e)
Jalanko P, Bond B, Laukkanen JA, Brage S, Ekelund U, Laitinen T, Määttä S, Kähönen M, Haapala EA, Lakka TA
Association between arterial health and cognition in adolescents: The PANIC study.
Physiol Rep: 2024 May, 12(9);e16024
[PubMed:38697946]
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[DOI]
( p)
Granell R, Haider S, Deliu M, Ullah A, Mahmoud O, Fontanella S, Lowe L, Simpson A, Dodd JW, Arshad SH, Murray CS, Roberts G, Hughes A, Park C, Holloway JW, Custovic A, STELAR/UNICORN investigators
Lung function trajectories from school age to adulthood and their relationship with markers of cardiovascular disease risk.
Thorax: 2024 May 2;
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[DOI]
( a)
Lochman I, Thon V, Šíma P
Lessons from the COVID-19 pandemic.
Epidemiol Mikrobiol Imunol: 2024, 73(1);51-58
[PubMed:38697840]
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[DOI]
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Roca Suarez AA, Plissonnier ML, Grand X, Michelet M, Giraud G, Saez-Palma M, Dubois A, Heintz S, Diederichs A, Van Renne N, Vanwolleghem T, Daffis S, Li L, Kolhatkar N, Hsu YC, Wallin JJ, Lau AH, Fletcher SP, Rivoire M, Levrero M, Testoni B, Zoulim F
TLR8 agonist selgantolimod regulates Kupffer cell differentiation status and impairs HBV entry into hepatocytes via an IL-6-dependent mechanism.
Gut: 2024 May 2;
[PubMed:38697771]
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[DOI]
( a)
Li H, Liu S, Zhang D, Zong X, Jiang G, Zhu C
Dysregulation of ferroptosis may participate in the mitigating effect of CoCl(2) on contrast-induced nephropathy.
Nefrologia (Engl Ed): 2024 Mar-Apr, 44(2);180-193
[PubMed:38697696]
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[DOI]
( p)
Kneist W
Robot-assisted oesophagectomy (Ivor-Lewis) for a complex stenosis previously managed by open gastrostomy tube placement.
BMJ Case Rep: 2024 May 2, 17(5);
[PubMed:38697681]
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[DOI]
( e)
Li B, Tang M, Wang P, Liu S, Yao M, Dong J
A new method of alkalinity remediation for Cd-contaminated groundwater by PAAS-modified MgCO(3)/Mg(OH)(2) colloid.
Chemosphere: 2024 Apr 30;142200
[PubMed:38697565]
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[DOI]
( a)
Rajesh K, Anahas AMP, Prasannabalaji N, Sophiya M, Ramanathan K, Sivakumar N, Dhanraj G, Dhanasekaran D
Histological validation of in-vivo larvicidal efficacy of marine Streptomyces sp. RD06 secondary metabolites against filariasis causing Culex quinquefasciatus and statistical media optimization for larvicidal derivatives production.
Acta Trop: 2024 Apr 30;107226
[PubMed:38697451]
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[DOI]
( a)
Fatima U, Yadav N, Venkatesu P
Sustainable combination of ionic liquid and deep eutectic solvent for protecting and preserving of the protein structure: The synergistic interaction of enzymes and eco-friendly hybrid ionic fluids.
Int J Biol Macromol: 2024 Apr 30;131997
[PubMed:38697420]
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[DOI]
( a)
Karadeniz H, Kesen S, Akhan MB, Unlu S, Kardas RC, Guler AA, Yıldırım D, Vasi I, Kaya B, Duran R, Tore NG, Erden A, Kucuk H, Goker B, Ozturk MA, Tufan A
Vascular Calcification in Takayasu Arteritis; Relationship with Metabolic Syndrome, Left Ventricular Mass Index and Intima-Media Thickness.
Hellenic J Cardiol: 2024 Apr 30;
[PubMed:38697292]
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[DOI]
( a)
Zheng D, Xie Q, Li F, Huang W, Qi Z, Dong J, Li G, Zhang F
Spatiotemporal dynamic temperature variation dominated by ion behaviors during groundwater remediation using direct current.
Environ Pollut: 2024 Apr 30;124091
[PubMed:38697248]
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[DOI]
( a)
Brusis T
[From the expert opinion practice: Noise-induced hearing loss and chronic otitis media (Assessment for combined hearing loss)].
Laryngorhinootologie: 2024 May, 103(5);368-370
[PubMed:38697083]
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[DOI]
( o)
Gu S, Xie L, Guan Q, Sheng X, Fang Y, Wang X
Effect of ethylene production by four pathogenic fungi on the postharvest diseases of green pepper (Capsicum annuum L.).
Int J Food Microbiol: 2024 Apr 30, 418;110729
[PubMed:38696986]
[WorldCat.org:
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[DOI]
( a)
Lindgren L, Holmlund S, Dunge J, Nording ML, Vinnars MT, Lindqvist M
"Navigating in a maze without a map". Partners' experiences of hyperemesis gravidarum- a qualitative study.
Sex Reprod Healthc: 2024 Apr 26, 40;100976
[PubMed:38696948]
[WorldCat.org:
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[DOI]
( a)
Lucy M
"Fighting demons": Stigma and shifting norms in explicit mention of overdose in obituaries, 2010-2019.
Soc Sci Med: 2024 Apr 29, 350;116926
[PubMed:38696937]
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[DOI]
( a)
Rai AK, Basak N, Chandra P, Sundha P, Kaur H, Bedwal S, Patel S, Kumar S, Choubey K, Meena RL, Sharma PC, Yadav RK
Occurrence of Sphingomonas olei with elemental S oxidation capability in sodic soil: Potential role in sodicity reclamation and plant growth promotion.
Ecotoxicol Environ Saf: 2024 May 1, 278;116396
[PubMed:38696872]
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[DOI]
( a)
Çetin OG, Gülgöz S
Autobiographical phenomenology of memories of fiction.
Memory: 2024 May 2;1-14
[PubMed:38696742]
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[DOI]
( a)
Buksa H, Johnson EC, Chan DHH, McBride RJ, Sanderson G, Corrigan RM, Armes SP
Arginine-Functional Methacrylic Block Copolymer Nanoparticles: Synthesis, Characterization, and Adsorption onto a Model Planar Substrate.
Biomacromolecules: 2024 May 2;
[PubMed:38696732]
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[DOI]
( a)
Manekin D, Mitts T, Zeira Y
The politics of allyship: Multiethnic coalitions and mass attitudes toward protest.
Proc Natl Acad Sci U S A: 2024 May 7, 121(19);e2314653121
[PubMed:38696470]
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[DOI]
( o)
Basu S, Yudkin JS, Jawad M, Ghattas H, Hamad BA, Jamaluddine Z, Safadi G, Ragi ME, Ahmad RES, Vamos EP, Millett C
Reducing non-communicable diseases among Palestinian populations in Gaza: A participatory comparative and cost-effectiveness modeling assessment.
PLOS Glob Public Health: 2024, 4(5);e0003168
[PubMed:38696423]
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[DOI]
( )
Zheng B, Wu X, Huo X, Wang S
Can low-carbon cities pilot policy promote enterprise sustainable development? Quasi-experimental evidence from China.
PLoS One: 2024, 19(5);e0301317
[PubMed:38696407]
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[DOI]
( )
Ijaiya MA, Anibi A, Abubakar MM, Obanubi C, Anjorin S, Uthman OA
A multilevel analysis of the determinants of HIV testing among men in Sub-Saharan Africa: Evidence from Demographic and Health Surveys across 10 African countries.
PLOS Glob Public Health: 2024, 4(5);e0003159
[PubMed:38696392]
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[DOI]
( )
Riley GM, Steffner R, Kwong S, Chin A, Boutin RD
MRI of Soft-Tissue Tumors: What to Include in the Report.
Radiographics: 2024 Jun, 44(6);e230086
[PubMed:38696323]
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[DOI]
( p)
Glayzer JE, Bray BC, Kobak WH, Steffen AD, Schlaeger JM
Lack of Diversity in Research on Females with Ehlers-Danlos Syndromes: Recruitment Protocol for a Quantitative Online Survey.
JMIR Res Protoc: 2024 May 2, 13;e53646
[PubMed:38696252]
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[DOI]
( e)
Leas EC, Ayers JW, Desai N, Dredze M, Hogarth M, Smith DM
Using Large Language Models to Support Content Analysis: A Case Study of ChatGPT for Adverse Event Detection.
J Med Internet Res: 2024 May 2, 26;e52499
[PubMed:38696245]
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[DOI]
( e)
Stukov Y, Maybauer MO, Ricks W, Rackauskas M
Dual lumen venopulmonary extracorporeal membrane oxygenation cannulation technique using the ProtekDuo.
Multimed Man Cardiothorac Surg: 2024 May 2, 2024;
[PubMed:38696241]
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[DOI]
( e)
Gouy G, Attali L, Voillot P, Fournet P, Agostini A
Experiences of Women With Medical Abortion Care Reflected in Social Media (VEILLE Study): Noninterventional Retrospective Exploratory Infodemiology Study.
JMIR Infodemiology: 2024 May 2, 4;e49335
[PubMed:38696232]
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[DOI]
( e)
Bah M, Banchani JS, Banchani E, Baatiema L, Issakah MA
Promoting lifestyle changes in patients with prediabetes from African-Caribbean backgrounds in the United Kingdom.
Ethn Health: 2024 May 2;1-19
[PubMed:38696222]
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[DOI]
( a)
Shah S, Famta P, Sharma A, Kumar R, Pandey G, Vambhurkar G, Srinivasarao DA, Shinde A, Prasad SB, Asthana A, Srivastava S
Quality by design empowered preparation of itraconazole albumin nanoparticles for prostate cancer.
Drug Deliv Transl Res: 2024 May 2;
[PubMed:38696091]
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[DOI]
( a)
Meli C, Cerami C, Arighi A, Mitolo M, Serra L, Bozzali M, Bruni AC, Marra C, Lavorgna L, Dodich A, SINdem4juniors, SINdem Dementia Digital He@lth working groups
Are we…social enough? Use of social media among members of the Italian Society of Neurology for the study of dementia.
Neurol Sci: 2024 May 2;
[PubMed:38695968]
[WorldCat.org:
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[DOI]
( a)
Mwamlima P, Njau KN, Rwiza M, Chacha N
Evaluating the performance of faecal sludge dewatering technologies in urban settings of developing African countries: a review.
Int J Environ Health Res: 2024 May 2;1-13
[PubMed:38695860]
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[DOI]
( a)
Vernon AR, Sandoval Medina K, Garcia MA, Cooper TV
The relationships between fear of missing out and psychological and sociocultural factors in Latinx emerging adult college students.
Cultur Divers Ethnic Minor Psychol: 2024 May 2;
[PubMed:38695818]
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[DOI]
( a)
Ojea V, Ruiz M
DLPNO-CCSD(T) and DFT study of the acetate-assisted C-H activation of benzaldimine at [RuCl(2)(p-cymene)](2): the relevance of ligand exchange processes at ruthenium(II) complexes in polar protic media.
Dalton Trans: 2024 May 2;
[PubMed:38695752]
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[DOI]
( a)
Wang XY, Yuan ZF, Gan KH, Zhong Y, Huang JX, Huang WJ, Xie YH, Pei XQ
Contrast-enhanced Imaging in Peripheral Pulmonary Lesions: The Role in US-guided Biopsies.
Radiol Cardiothorac Imaging: 2024 Jun, 6(3);e230234
[PubMed:38695742]
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[DOI]
( p)
Ohira S, Gregory V, Spielvogel D
Redo partial aortic root remodelling in type A dissection with an aorto-left atrial fistula.
Multimed Man Cardiothorac Surg: 2024 May 2, 2024;
[PubMed:38695663]
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[DOI]
( e)
Hiremath SD, Kumar N, Banerjee S
Metal Ion Responsive Luminescent Bio-templated Co-assemblies: Label-Free Detection of Multi-Metal Ions in Aqueous Media.
Chem Asian J: 2024 May 2;e202400291
[PubMed:38695635]
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[DOI]
( a)
Wirtz L, Casanova F, Schaffrath U, Wegner A
Development of a telomere vector-based approach to overcome limitations caused by lethal phenotypes in the study of essential genes in Magnaporthe oryzae.
Mol Plant Pathol: 2024 May, 25(5);e13460
[PubMed:38695626]
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[DOI]
( p)
Paul Raj E, Rajesh P, Anjali S, Dash S
Effect of irradiated nonionic surfactant on drug-protein binding.
J Biomol Struct Dyn: 2024 May 2;1-15
[PubMed:38695559]
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[DOI]
( a)
Batista KBC, Fernandez MV, Barberia LG, Silva ETD, Pedi VD, Pontes BMLM, Araujo G, Moreira RDS, Pedrosa M, Verotti MP, Henriques CMP, Florêncio AC, Amorim MMR
[Overview of long COVID in Brazil: a preliminary analysis of a survey to think about health policies].
Cad Saude Publica: 2024, 40(4);e00094623
[PubMed:38695461]
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[DOI]
( )
Hasdeu S, Beliera A, Alvarez J, Sanchez-Viamonte J
[Asymmetries between national articulation and the autonomy of state governments in implementing health technologies to fight COVID-19 in Argentina].
Cad Saude Publica: 2024, 40(4);e00117923
[PubMed:38695457]
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[DOI]
( )
Czaplicki L, Barker HE, Thrul J, Cui Y, Yang T, Cohen JE
Quantifying cigarette and e-cigarette marketing exposure among Chinese adolescents using ecological momentary assessment.
Nicotine Tob Res: 2024 May 2;
[PubMed:38695345]
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[DOI]
( a)
Sari E, Gungor Satilmis İ
Concerns about fertility, social appearance, and relationships in young adults with polycystic ovary syndrome.
J Reprod Infant Psychol: 2024 May 2;1-11
[PubMed:38695338]
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[DOI]
( a)
Chen D, Jia Y, Wang X, Guo L
Micro- and Mesoporous Structural Effects of Beta Zeolites for Volatile Organic Compound Sorption.
Langmuir: 2024 May 2;
[PubMed:38695309]
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[DOI]
( a)
Conaty S, Ike JD, Lane W, Bayerle H, Logan RA, Parker RM
Understanding Breast Cancer Images in Art History as a Form of Health Communication.
J Health Commun: 2024 May 2;1-7
[PubMed:38695299]
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[DOI]
( a)
Li J, Yu X, Shu D, Liu H, Gu M, Zhang K, Mao G, Yang S, Yang R
Accelerated Activity-Based Sensing by Fluorogenic Reporter Engineering Enables to Rapidly Determine Unstable Analyte.
Anal Chem: 2024 May 2;
[PubMed:38695281]
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[DOI]
( a)
Baltrus DA, Carter M, Clark M, Smith C, Spraker J, Inderbitzin P, Arnold AE
Luteibacter mycovicinus sp. nov., a yellow-pigmented gammaproteobacterium found as an endohyphal symbiont of endophytic Ascomycota.
Int J Syst Evol Microbiol: 2024 May, 74(5);
[PubMed:38695275]
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[DOI]
( p)
Urciuolo F, Imparato G, Netti PA
Engineering cell instructive microenvironments for in vitro replication of functional barrier organs.
Adv Healthc Mater: 2024 May 2;e2400357
[PubMed:38695274]
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[DOI]
( a)
Addo J, Davy M, Newlands A, Orford L, Guta P, Scott R, van Hasselt J, Maher-Edwards G
The Africa non-communicable diseases (NCD) Open Lab: Impact of a portfolio of clinical studies to deepen the understanding of NCDs in sub-Saharan Africa.
J Glob Health: 2024 May 3, 14;04065
[PubMed:38695258]
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[DOI]
( e)
Sellitto S, Tarantino L, Barone F, Barone N, Perna A, Lucariello A, Guerra G, De Luca A, Filippelli A, Sellitto C
Contrast-Enhanced Ultrasound as a Diagnostic Procedure in Renal Diseases: A Case Report.
G Ital Nefrol: 2024 Apr 29, 41(2);
[PubMed:38695227]
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( e)
Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968]
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[DOI]
( p)
Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247]
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[DOI]
( o)
Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187]
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( o)
Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096]
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[DOI]
( o)
Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151]
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( o)
<biblio>
- Kutalik2008NB pmid=18464786 // PDF
- Ihmels2004 pmid=15606968 // PDF
- Ihmels2004a pmid=15044247 // PDF
- Bergmann2004 pmid=14737187 // PDF
- Bergmann2003 pmid=12689096 //PDF
- Ihmels2002 pmid=12134151 // PDF
</biblio>