ISA

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An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Fernández-Fernández E, Brugarolas E, Monjo-Henry I, Novella-Navarro M, Balsa A, De Miguel E
The influence of the cardiac cycle on the halo sign and its impact on the ultrasound diagnosis of giant cell arteritis.
Rheumatology (Oxford): 2024 May 17;
[PubMed:38759208] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Keogh RR, Kozhukhov T, Thijssen K, Shendruk TN
Active Darcy's Law.
Phys Rev Lett: 2024 May 3, 132(18);188301
[PubMed:38759204] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

An S, Liu T, Cao L, Gu Z, Fan H, Zeng Y, Cheng L, Zhu J, Assouar B
Multibranch Elastic Bound States in the Continuum.
Phys Rev Lett: 2024 May 3, 132(18);187202
[PubMed:38759185] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Segal A, Doyle NW
Technology trends in practice: A survey of occupational therapy practitioners.
Work: 2024 May 16;
[PubMed:38759088] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rana SS, Choudhury J
Orchestrated Octuple C-H Activation: A Bottom-Up Topology Engineering Approach toward Stimuli-Responsive Double-Heptagon-Embedded Wavy Polycyclic Heteroaromatics.
Angew Chem Int Ed Engl: 2024 May 17;e202406514
[PubMed:38758986] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Baudrit C, Fernandez C, Couteaux J, Ndiaye A
Electronic knowledge books (eK-Books) as a medium to capitalise on and transfer scientific, engineering, operational, technological and craft knowledge.
PLoS One: 2024, 19(5);e0299150
[PubMed:38758949] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Lee JH, Lee SE, Kwon YS
Exploring empathic engagement in immersive media: An EEG study on mu rhythm suppression in VR.
PLoS One: 2024, 19(5);e0303553
[PubMed:38758939] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Baral P, Afnan N, Ahmad Zahra M, Akter B, Rabia Prapti S, Muazzam Hossan M, Haque FKM
Bacteriological analysis and antibiotic resistance in patients with diabetic foot ulcers in Dhaka.
PLoS One: 2024, 19(5);e0301767
[PubMed:38758936] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Liu J, Liu Y, Chen V, Chee W, Im EO
Feasibility and acceptability of a home-based virtual group exercise program in global Asian adult population: Baseline characteristics of a cohort study.
Medicine (Baltimore): 2024 May 17, 103(20);e38121
[PubMed:38758883] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Daga P, Thurakkal B, Rawal S, Das T
Matrix stiffening promotes perinuclear clustering of mitochondria.
Mol Biol Cell: 2024 May 17;mbcE23040139
[PubMed:38758658] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang Y, Fu J, Lai J, Deng S, Guo Z, Zhong C, Tang J, Cao W, Wu Y
Reporting of Ethical Considerations in Qualitative Research Utilizing Social Media Data on Public Health Care: Scoping Review.
J Med Internet Res: 2024 May 17, 26;e51496
[PubMed:38758590] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ramsey WA, Cobler-Lichter MD, O'Neil CF, Ishii M, Satahoo SS, Kaufman JI, Pizano LR, Koru-Sengul T, Szapocznik J, Schulman CI
Mental Health Support Is an Unmet Need for Long-Term Burn Survivors: A Web-Based Survey.
J Burn Care Res: 2024 May 17;
[PubMed:38758544] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rodrigues NT, Alves Aarão Reis FD
Adsorption of Diffusing Tracers, Apparent Tortuosity, and Application to Mesoporous Silica.
Langmuir: 2024 May 17;
[PubMed:38758366] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mir NUD, Hossain S, Biswas S
A recyclable luminescent MOF sensor for on-site detection of insecticide dinotefuran and anti-Parkinson's drug entacapone in various environmental and biological specimens.
Chem Asian J: 2024 May 17;e202400377
[PubMed:38758347] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Reis FCG, Castelli RF, Kuczera D, Oliveira HC, Rodrigues ML
Analysis of Cryptococcus Extracellular Vesicles.
Methods Mol Biol: 2024, 2775;359-365
[PubMed:38758329] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Wilson PC, Hinz FO, Farrell I
Impacts of Fulvic Acid on the Toxicity of the Herbicide Atrazine to Lemna minor.
Bull Environ Contam Toxicol: 2024 May 17, 112(6);77
[PubMed:38758236] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Wang L, Zhang K, Zhang X, Tan Y, Guo L, Xia Y, Wang X
Mismatched Supramolecular Interactions Facilitate the Reprocessing of Super-Strong and Ultra-Tough Thermoset Elastomers.
Adv Mater: 2024 May 17;e2311758
[PubMed:38758171] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Snieder R, Deheuvels M
Energy partitioning among compressional and shear waves in three-dimensional attenuating elastic media.
J Acoust Soc Am: 2024 May 1, 155(5);3336-3344
[PubMed:38758054] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Côrte-Real L, Sergi B, Yildirim B, Colucas R, Starosta R, Fontrodona X, Romero I, André V, Acilan C, Correia I
Enhanced selectivity towards melanoma cells with zinc(II)-Schiff bases containing imidazole derivatives.
Dalton Trans: 2024 May 17;
[PubMed:38758025] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Furuyama T, Yamamoto R, Kato N, Ono M
Erratum: Modified Fear Conditioning for Inducing Flight Behaviors in Mice.
J Vis Exp: 2024 May 17, (207);
[PubMed:38758020] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Landers S, Parsh B
Risks of 'bone smashing' trend on social media.
Nursing: 2024 Jun 1, 54(6);11
[PubMed:38757990] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Romer D, Patterson ST, Jamieson PE, Jamieson KH
What Caused the Narrowing of Black-White COVID-19 Vaccination Disparity in the US? A Test of 5 Hypotheses.
J Health Commun: 2024 May 17;1-12
[PubMed:38757709] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bai K, Tan KH
The Influence of Online Social and Physical Presence on User Consumption Decisions in TikTok Livestreaming: A Scoping Review.
Cyberpsychol Behav Soc Netw: 2024 May 17;
[PubMed:38757705] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ansari S, Azeem A, Khan I, Iqbal N
Association of Phubbing Behavior and Fear of Missing Out: A Systematic Review and Meta-Analysis.
Cyberpsychol Behav Soc Netw: 2024 May 17;
[PubMed:38757677] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang T, Wang Y, Fu Y, Chen Z, Jiang C, Ji YE, Lu Y
Angle-Multiplexed 3D Photonic Superstructures with Multi-Directional Switchable Structural Color for Information Transformation, Storage, and Encryption.
Adv Sci (Weinh): 2024 May 17;e2400442
[PubMed:38757669] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Moghaddam M, Godeffroy L, Jasielec JJ, Kostopoulos N, Noël JM, Piquemal JY, Lemineur JF, Peljo P, Kanoufi F
Scanning Electrochemical Microscopy Meets Optical Microscopy: Probing the Local Paths of Charge Transfer Operando in Booster-Microparticles for Flow Batteries.
Small: 2024 May 17;e2309607
[PubMed:38757541] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yılmaz N, Deniz OG, Secgin S, Secgin Y, Bozduman F
Investigation of the effectiveness of atmospheric pressure cold plasma on sciatic nerve injury in rats.
Folia Morphol (Warsz): 2024 May 17;
[PubMed:38757499] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tootoonchian P, Holló G, Uzunlar R, Lagzi I, Baytekin B
Periodic Stratification of Colloids in a Liquid Phase Produced by a Precipitation Reaction and Gel Swelling.
Langmuir: 2024 May 17;
[PubMed:38757442] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gao Y, Huang Y, Ren C, Chou P, Wu C, Pan X, Quan G, Huang Z
Looking back, moving forward: protein corona of lipid nanoparticles.
J Mater Chem B: 2024 May 17;
[PubMed:38757190] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yang TT, Zhang YQ, Xie MS, Tian Y, Wang DC, Guo HM
Dearomative [2 + 1] Spiroannulation of Bromophenols with Electron-Deficient Alkenes.
J Org Chem: 2024 May 17;
[PubMed:38757188] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Roberts AR, Vallabhaneni N, Russi B, Spence TL, Leiding JW, Sochet AA
Azithromycin for Pediatric Critical Asthma: A Multicenter Retrospective Cohort Study.
Hosp Pediatr: 2024 May 17;
[PubMed:38757173] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Murray C, Mitchell L, Tuke J, Mackay M
Revealing patient-reported experiences in healthcare from social media using thedesign-acquire-process-model-analyse-visualise framework.
Digit Health: 2024 Jan-Dec, 10;20552076241251715
[PubMed:38757085] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Pechlaner G
Biotechnology activism is dead; long live biotechnology activism! The lure and legacy of market-based food movement strategies.
Agric Human Values: 2024, 41(2);583-597
[PubMed:38756988] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Hennocq Q, Bongibault T, Garcelon N, Khonsari RH
Humanitarian Facial Recognition for Rare Craniofacial Malformations.
Plast Reconstr Surg Glob Open: 2024 May, 12(5);e5780
[PubMed:38756957] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zhang Y, Chow EPF, Sudarto B, Wang D, Stoove M, Medland N, O'Donnell D, Keen P, Ong JJ, Phillips TR
HIV self-testing knowledge, attitudes, and practices among Asian-born gay, bisexual, and other men who have sex with men in Australia: a qualitative study.
Front Public Health: 2024, 12;1325081
[PubMed:38756874] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Walker AIB, Trani JF, Banks CF, Murphy SA, Zha W, Williams MM, Day GS, Zhu Y, Ances BM, Hill CV, Hudson DL, Babulal GM
Recruiting a prospective community cohort to study Alzheimer's disease and structural and social determinants of health among adults racialized as Black: The ARCHES cohort.
Alzheimers Dement (N Y): 2024 Apr-Jun, 10(2);e12473
[PubMed:38756718] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Suraseth C, Koraneekij P
Cyberbullying among secondary school students: Analyzing prediction and relationship with background, social status, and ICT use.
Heliyon: 2024 May 15, 10(9);e30775
[PubMed:38756584] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Wu Y, Mai C
Dynamic spillover between crude oil, gold, and Chinese stock market sectors -analysis of spillovers during financial crisis data during the last two decades.
Heliyon: 2024 May 15, 10(9);e30219
[PubMed:38756561] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Stieger S, Volsa S, Willinger D, Lewetz D, Batinic B
Laughter in everyday life: an event-based experience sampling method study using wrist-worn wearables.
Front Psychol: 2024, 15;1296955
[PubMed:38756489] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Galily Y, Pack S, Tamir I
Editorial: Spectator sport and fan behavior: a sequel.
Front Psychol: 2024, 15;1414407
[PubMed:38756488] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Creary MS, Greer SL, Kitzmiller S, Singer PM, Unwala NA, Vaziri S, Willison CE
Pivot: partisan policy responses to COVID-19 health disparities.
Health Aff Sch: 2023 Dec, 1(6);qxad054
[PubMed:38756359] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Savvopoulou N, Asimakopoulos K, Gourzis P, Jelastopulu E
Exploring the Psychological Impact of Quarantine: An Investigation into Eating Patterns, Emotions, and Loneliness During the COVID-19 Pandemic in Greece.
Cureus: 2024 Apr, 16(4);e58411
[PubMed:38756319] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Reese I
"Climate-friendly" diets from an allergy point of view.
Allergol Select: 2024, 8;199-205
[PubMed:38756209] [WorldCat.org: ISSN ESSN ] [DOI] ( )

de Araújo AC, Xavier KDS, Moya-Mata I, da Costa AQ, Canon-Buitrago EA, Oliverira BN, Carvalho RS
Digital technology in national curricula: a dialogue among Iberoamerican countries.
Front Sports Act Living: 2024, 6;1355967
[PubMed:38756187] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Liang A, Liu C, Branicio PS
Colloid Transport in Bicontinuous Nanoporous Media.
Langmuir: 2024 May 17;
[PubMed:38756103] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hamdan S, Guz T, Zalsman G
The Clinical Sequelae of the COVID-19 Pandemic: Loneliness, Depression, Excessive Alcohol Use, Social Media Addiction, and Risk for Suicide Ideation.
Arch Suicide Res: 2024 May 16;1-14
[PubMed:38756019] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sulistyarsi P, Fauziah E, Budiardjo SB
Effect of electronic book "Traumatic dental injury to children's permanent teeth" on primary school teacher's knowledge.
J Clin Pediatr Dent: 2024 May, 48(3);101-106
[PubMed:38755988] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Diksha, Eswar G, Biswas S
Prediction of depinning transitions in interface models using Gini and Kolkata indices.
Phys Rev E: 2024 Apr, 109(4-1);044113
[PubMed:38755897] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Sahimi M
Physics-informed and data-driven discovery of governing equations for complex phenomena in heterogeneous media.
Phys Rev E: 2024 Apr, 109(4-1);041001
[PubMed:38755895] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Poperechny IS
Superparamagnetic effects in the linear magnetic response of polydisperse ensembles of nanoparticles suspended in a fluid.
Phys Rev E: 2024 Apr, 109(4-1);044601
[PubMed:38755891] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Jakuszeit T, Croze OA
Role of tumbling in bacterial scattering at convex obstacles.
Phys Rev E: 2024 Apr, 109(4-1);044405
[PubMed:38755868] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ansari S, Raghuram H, Bhan A
Saviour siblings in India: A reminder of our existing challenges and biases.
Indian J Med Ethics: 2024 Apr-Jun, IX(2);168
[PubMed:38755767] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Osborne A, James PB, Bangura C, Kangbai JB
Exploring the drivers of unmet need for contraception among adolescents and young women in Sierra Leone. a cross-sectional study.
Contracept Reprod Med: 2024 May 17, 9(1);25
[PubMed:38755669] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Seifu BL, Legesse BT, Yehuala TZ, Kase BF, Asmare ZA, Mulaw GF, Tebeje TM, Mare KU
Factors associated with the co-utilization of oral rehydration solution and zinc for treating diarrhea among under-five children in 35 sub-saharan Africa countries: a generalized linear mixed effect modeling with robust error variance.
BMC Public Health: 2024 May 16, 24(1);1329
[PubMed:38755544] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Afsharipour S, Mirzaalian Dastjerdi A, Seyedi A
Optimizing Cucumis sativus seedling vigor: the role of pistachio wood vinegar and date palm compost in nutrient mobilization.
BMC Plant Biol: 2024 May 16, 24(1);407
[PubMed:38755531] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hanson KR, Döring N, Walter R
Sex Doll Specifications versus Human Body Characteristics.
Arch Sex Behav: 2024 May 16;
[PubMed:38755504] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Paul M, Ghosh B, Biswas S
F127/chlorin e6-nanomicelles to enhance Ce6 solubility and PDT-efficacy mitigating lung metastasis in melanoma.
Drug Deliv Transl Res: 2024 May 16;
[PubMed:38755500] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ma Y, Li C, Yan J, Yu H, Kan H, Yu W, Zhou X, Meng Q, Dong P
Application and mechanism of carbonate material in the treatment of heavy metal pollution: a review.
Environ Sci Pollut Res Int: 2024 May 17;
[PubMed:38755474] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liu Y, Wang R, Liu J, Fan M, Ye Z, Hao Y, Xie F, Wang T, Jiang Y, Liu N, Cui X, Lv Q, Yan L
The vacuolar fusion regulated by HOPS complex promotes hyphal initiation and penetration in Candida albicans.
Nat Commun: 2024 May 16, 15(1);4131
[PubMed:38755250] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Bhattacharyya S, Borthakur A, Tobacman JK
Common food additive carrageenan inhibits proglucagon expression and GLP-1 secretion by human enteroendocrine L-cells.
Nutr Diabetes: 2024 May 16, 14(1);28
[PubMed:38755184] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Faber T, Coffeng LE, Sheikh A, Reiss IK, Mackenbach JP, Been JV
Tobacco control policies and respiratory conditions among children presenting in primary care.
NPJ Prim Care Respir Med: 2024 May 16, 34(1);11
[PubMed:38755181] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lee J, Ouellette RR, Morean ME, Kong G
Adolescents and Young Adults Use of Social Media and Following of e-Cigarette Influencers.
Subst Use Misuse: 2024 May 16;1-7
[PubMed:38755112] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kim J, Yoon S, Kim HYS
Prevalence of Selected Ophthalmic Diseases Using a Smartphone-Based Fundus Imaging System in Quang Tri and Thai Nguyen, Vietnam.
Healthc Inform Res: 2024 Apr, 30(2);162-167
[PubMed:38755107] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Jiménez Mayordomo M, Bresó Vila MC, Gimeno Cardona C, Ocete Mochón MD
Comparison of culture media for the detection of Legionella spp. in sanitary water samples: Adaptation to ISO 11731:2017.
Enferm Infecc Microbiol Clin (Engl Ed): 2024 May 15;
[PubMed:38755040] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Cosquer M, Finck C, Jousselme C, Lefebvre A
Violent video gaming among French adolescents: Impact on mental health by gender.
Encephale: 2024 May 15;
[PubMed:38755029] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hopkinson NS, Vrinten C, Parnham JC, Radó MK, Filippidis F, Vamos EP, Laverty AA
Association of time spent on social media with youth cigarette smoking and e-cigarette use in the UK: a national longitudinal study.
Thorax: 2024 May 16;
[PubMed:38755014] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lavoie KL
Strengthening the evidence base to support stronger regulation of social media based advertising of e-cigarette products to youth.
Thorax: 2024 May 16;
[PubMed:38755013] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Garcia-Iglesias J, Heaphy B, Mowlabocus S, Yodovich N, Nagington M, Patton K, Atherton S, Ford A
Dating apps as health allies? Examining the opportunities and challenges of dating apps as partners in public health.
Med Humanit: 2024 May 15;
[PubMed:38754966] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Viseskul N, Kasatpibal N, Kaewsakol C, Kunkhet A, Viriyachetkun S, Turale S
Nurses' satisfaction with an educational web application to prevent transmission of multidrug-resistant organisms.
Nurs Health Sci: 2024 Jun, 26(2);e13126
[PubMed:38754867] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Chien Y, Huang XY, Yarmishyn AA, Chien CS, Liu YH, Hsiao YJ, Lin YY, Lai WY, Huang SC, Lee MS, Chiou SH, Yang YP, Chiou GY
Paracrinal Regulation of Neutrophil Functions by Coronaviral Infection in iPSC-derived Alveolar Type II Epithelial Cells.
Virus Res: 2024 May 14;199391
[PubMed:38754785] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Terefinko D, Dzimitrowicz A, Bielawska-Pohl A, Pohl P, Klimczak A, Jamroz P
Comprehensive studies on the biological activities of human metastatic (MDA-MB-231) and non-metastatic (MCF-7) breast cancer cell lines, directly or combinedly treated using non-thermal plasma-based approaches.
Toxicol In Vitro: 2024 May 14;105846
[PubMed:38754599] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yao L, Cooper A, Gill A, Koziol A, Wong A, Blais BW, Carrillo CD
Overcoming microbial inhibition of S. sonnei through the exploitation of genomically-predicted antibiotic resistance profiles for the development of food enrichment media.
J Food Prot: 2024 May 14;100302
[PubMed:38754553] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Naci H, Zhang Y, Woloshin S, Guan X, Xu Z, Wagner AK
Overall survival benefits of cancer drugs initially approved by the US Food and Drug Administration on the basis of immature survival data: a retrospective analysis.
Lancet Oncol: 2024 May 13;
[PubMed:38754451] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kravitz ND
Adjusting a MARA appliance after substantial maxillary expansion.
J Clin Orthod: 2024 Mar, 58(3);1000
[PubMed:38754383] [WorldCat.org: ISSN ESSN ] ( p)

Simonsson C, Nyman E, Gennemark P, Gustafsson P, Hotz I, Ekstedt M, Lundberg P, Cedersund G
A unified framework for prediction of liver steatosis dynamics in response to different diet and drug interventions.
Clin Nutr: 2024 May 9, 43(6);1532-1543
[PubMed:38754305] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Haucke M, Heinzel S, Liu S
Social mobile sensing and problematic alcohol consumption: Insights from smartphone metadata.
Int J Med Inform: 2024 May 14, 188;105486
[PubMed:38754285] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Marrie RA, Patel R, Schaffer SA
Carotid intima media thickness in multiple sclerosis: A CLSA study.
Mult Scler Relat Disord: 2024 May 10, 87;105660
[PubMed:38754248] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Raza MA, Kim SA, Kim DI, Song MK, Han SS, Park SH
Synthesis of carboxymethyl chitosan-guar gum-poly(vinylpyrrolidone) ternary blended hydrogels with antibacterial/anticancer efficacy and drug delivery applications.
J Biomater Sci Polym Ed: 2024 May 16;1-20
[PubMed:38754029] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Muñoz-Zapata DE, Osorio-Franco JM
[Social media as platforms for the visibility of gender-based violence during the COVID-19 pandemic in Colombia].
Salud Colect: 2024 Apr 2, 20;e4601
[PubMed:38753982] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ang B, Jirapanjawat T, Tay KP, Ashtiani D, Greening C, Tuck KL, Neild A, Cadarso VJ
Rapid Concentration and Detection of Bacteria in Milk Using a Microfluidic Surface Acoustic Wave Activated Nanosieve.
ACS Sens: 2024 May 16;
[PubMed:38753893] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rathbone AP, Pearson H, Akinyemi O, Cartwright N, Tierney S, Rowlands G, Lindsey L
"You don't get side effects from social prescribing"-A qualitative study exploring community pharmacists' attitudes to social prescribing.
PLoS One: 2024, 19(5);e0301076
[PubMed:38753861] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Mekonen EG, Workneh BS, Tamir TT, Zegeye AF
Prompt treatment of fever and its associated factors among under-five children in sub-Saharan Africa: A multilevel analysis of evidence from 36 countries.
PLoS One: 2024, 19(5);e0303680
[PubMed:38753676] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Yang N, Wang X, Ren J
Numerical simulation of temperature field of a new type of freezing device under seepage effect.
PLoS One: 2024, 19(5);e0298003
[PubMed:38753601] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Barajas-Ochoa A, Ramos-Remus C
Posting sensitive personal data in social media: opportunities for improvement.
Gac Med Mex: 2024, 160(1);104-106
[PubMed:38753546] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Smith SL, Parashar R, Nanda S, Shiffman J, Shroff ZC, Shawar YR, Hamunakwadi DL
Shifting patterns and competing explanations for infectious disease priority in global health agenda setting arenas.
Health Policy Plan: 2024 May 16;
[PubMed:38753344] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chen D, Parsa R, Hope A, Hannon B, Mak E, Eng L, Liu FF, Fallah-Rad N, Heesters AM, Raman S
Physician and Artificial Intelligence Chatbot Responses to Cancer Questions From Social Media.
JAMA Oncol: 2024 May 16;
[PubMed:38753317] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Horrocks L, Holloway D, Rymer J, Bruce D
Quality improvement project - Reducing the inadvertent prescribing of unopposed estrogen in primary care Dr Liz Horrocks Banstead PCN.
Post Reprod Health: 2024 May 16;20533691241240552
[PubMed:38753305] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

McAlpine D, MacKay M, Grant LE, Papadopoulos A, McWhirter JE
Modernizing public health communication competencies in Canada: A survey of the Canadian public health workforce.
Can J Public Health: 2024 May 16;
[PubMed:38753267] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Giroux CM, Kim S, Thomas A
How the knowledge shared using social media is taken up into health professions education practice: A qualitative descriptive study.
Adv Health Sci Educ Theory Pract: 2024 May 16;
[PubMed:38753203] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yoshida K, Nagayama Y, Funama Y, Ishiuchi S, Motohara T, Masuda T, Nakaura T, Ishiko T, Hirai T, Beppu T
Low tube voltage and deep-learning reconstruction for reducing radiation and contrast medium doses in thin-slice abdominal CT: a prospective clinical trial.
Eur Radiol: 2024 May 16;
[PubMed:38753193] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chen Y, Meng Y, Zhang J, Xie Y, Guo H, He M, Shi X, Mei Y, Sheng X, Xie D
Leakage Proof, Flame-Retardant, and Electromagnetic Shield Wood Morphology Genetic Composite Phase Change Materials for Solar Thermal Energy Harvesting.
Nanomicro Lett: 2024 May 16, 16(1);196
[PubMed:38753068] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

İzgördü ÖK, Gurbanov R, Darcan C
Understanding the transition to viable but non-culturable state in Escherichia coli W3110: a comprehensive analysis of potential spectrochemical biomarkers.
World J Microbiol Biotechnol: 2024 May 16, 40(7);203
[PubMed:38753033] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Srinivasan N, Chandran R, Narayanan J, Sasikumar DK, Raju V
Half-turned truncal switch operation for dextro-transposition of the great arteries with ventricular septal defect and left ventricular outflow tract obstruction and an abnormal coronary pattern.
Multimed Man Cardiothorac Surg: 2024 May 16, 2024;
[PubMed:38752879] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

He K, Kou G, Cai H, Tian G, Xu Z, Yang Z
Effects of Contact Surface Shape on Dynamic Lifetime and Strength of Molecular Bond Clusters under Displacement- and Force-Controlled Loading Conditions.
Langmuir: 2024 May 16;
[PubMed:38752855] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li X, Wang Y, Cui J, Shi Y, Cai Y
Occurrence and Fate of Per- and Polyfluoroalkyl Substances (PFAS) in Atmosphere: Size-Dependent Gas-Particle Partitioning, Precipitation Scavenging, and Amplification.
Environ Sci Technol: 2024 May 16;
[PubMed:38752583] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tieu L, Qiu JL, Puvipalan V, Pasternak R
EXPRESS: Experimental evidence for a semantic typology of emoji: Inferences of co-, pro-, and post-text emoji.
Q J Exp Psychol (Hove): 2024 May 16;17470218241255786
[PubMed:38752511] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gao J, Proffitt DR, Marecki JC, Protacio RU, Wahls WP, Byrd AK, Raney KD
Two residues in the DNA binding site of Pif1 helicase are essential for nuclear functions but dispensable for mitochondrial respiratory growth.
Nucleic Acids Res: 2024 May 16;
[PubMed:38752483] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chowdhury MZI, Mubin N, Mohib T, Chowdhury N, Chowdhury TF, Laskar AMH, Sultana S, Raihan M, Turin TC
Cancer screening research in Bangladesh: Insights from a scoping review.
Glob Public Health: 2024 Jan, 19(1);2351186
[PubMed:38752425] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Salzer R, Hrastelj N, Smith A
European Employment Survey for Chemists (ESEC3) Careers of Chemistry Graduates in Europe.
Chemistry: 2024 May 16;e202401223
[PubMed:38752275] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Shen X, Jia G
[Research progress in the treatment of distal humeral metaphyseal-diaphyseal junction fracture in children].
Zhongguo Xiu Fu Chong Jian Wai Ke Za Zhi: 2024 May 15, 38(5);613-617
[PubMed:38752250] [WorldCat.org: ISSN ESSN ] [DOI] ( p) 

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151] [WorldCat.org: ISSN ESSN ] [DOI] ( o)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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