ISA

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An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Brijnath B, Rao R, Baruah U, Antoniades J, Loganathan S, Varghese M, Cooper C, Kent M, Dow B
Relational solidarity and conflicting ethics in dementia care in urban India.
J Gerontol B Psychol Sci Soc Sci: 2024 May 6;
[PubMed:38708694] [WorldCat.org: ISSN ESSN ] [DOI] ( a)


[Interpreting the evidence. Reducing subjectivity in appraising the evidence calls for a return to teaching evidence-based medicine.].
Recenti Prog Med: 2024 May, 115(5);213-214
[PubMed:38708531] [WorldCat.org: ISSN ESSN ] [DOI] ( p)


Un mese nei tweet
per conoscere, per riflettere, per costruire reti.
Recenti Prog Med: 2024 May, 115(5);210-211
[PubMed:38708530] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Adachi K, Azakami H, Yamauchi M, Koshoji M, Yamamoto A, Tanaka S
Cyclodextrin-Assisted Surface-Enhanced Photochromic Phenomena of Tungsten(VI) Oxide Nanoparticles for Label-Free Colorimetric Detection of Phenylalanine.
ACS Omega: 2024 Apr 30, 9(17);18957-18972
[PubMed:38708261] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Huang T, Ren X, Chen Y, Ma J, Yi D, Wan Z, Yu B, Zeng W
Transient Combustion Characteristics of Methane-Hydrogen Mixtures in Porous Media Burner.
ACS Omega: 2024 Apr 30, 9(17);19525-19535
[PubMed:38708215] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ghaitaranpour A, Koocheki A, Mohebbi M
Multi-agent simulation of doughnut deep fat frying considering two domain heating media and sample flipping.
Curr Res Food Sci: 2024, 8;100751
[PubMed:38708098] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Upham F, Lee JH, Park SY
Audience reconstructed: social media interaction by BTS fans during live stream concerts.
Front Psychol: 2024, 15;1214930
[PubMed:38708012] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Gao Y, Liu H, Sun Y
Research on the Evolution Trend of Group Psychological Security Risks Under Public Health Emergencies: Mining and Analysis Based on Social Media Data.
Psychol Res Behav Manag: 2024, 17;1787-1801
[PubMed:38707961] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cuperus T, Wit B, Castelijn G, Hengeveld P, Opsteegh M, van der Giessen J, Harmanus C, van Prehn J, Kuijper EJ, Smits WK
Clostridioides difficile in calves, cattle and humans from Dutch dairy farms: Predominance of PCR ribotype 695 (clade 5, sequence type 11) in cattle.
One Health: 2024 Jun, 18;100739
[PubMed:38707933] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ni B, Xiao Y, Wei R, Liu W, Zhu L, Liu Y, Ruan Z, Li J, Wang S, Zhao J, Huang W
Qufeng tongluo decoction decreased proteinuria in diabetic mice by protecting podocytes via promoting autophagy.
J Tradit Complement Med: 2024 May, 14(3);312-320
[PubMed:38707926] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zhu C, Jiang Y, Lei H, Wang H, Zhang C
The relationship between short-form video use and depression among Chinese adolescents: Examining the mediating roles of need gratification and short-form video addiction.
Heliyon: 2024 May 15, 10(9);e30346
[PubMed:38707427] [WorldCat.org: ISSN ESSN ] [DOI] ( )

James CE, Müller DM, Müller CAH, Van De Looij Y, Altenmüller E, Kliegel M, Van De Ville D, Marie D
Randomized controlled trials of non-pharmacological interventions for healthy seniors: Effects on cognitive decline, brain plasticity and activities of daily living-A 23-year scoping review.
Heliyon: 2024 May 15, 10(9);e26674
[PubMed:38707392] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Hajjaj M, Borodin V, Perțicas DC, Florea AG
Qatar's FIFA World Cup odyssey: A quest for legacy transforming a small nation into a global destination.
Heliyon: 2024 May 15, 10(9);e30282
[PubMed:38707289] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ducret J, Barbeau B
A revised digestion method to characterize manganese content in solids.
MethodsX: 2024 Jun, 12;102731
[PubMed:38707215] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Morris K, Lane F, Nelson AL, Stohl HE
How Do Women Vote: What Women Post About Home Birth Versus Hospital Birth on Popular Social Media Platforms.
Cureus: 2024 Apr, 16(4);e57621
[PubMed:38707150] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Abaturovas R, Jakstas T, Talijūnas A, Balseris S, Arechvo I
Cholesteatoma Complicated by Parapharyngeal Abscess That Occurred After Temporal Bone Fracture.
Cureus: 2024 Apr, 16(4);e57523
[PubMed:38707133] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Sham S, Shiwlani S, Kirshan Kumar S, Bai P, Bendari A
Empowering Patients Through Digital Health Literacy and Access to Electronic Medical Records (EMRs) in the Developing World.
Cureus: 2024 Apr, 16(4);e57527
[PubMed:38707104] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Persaud SA, Jankie S, Andrews R, Varachhia S, Morris M
High Self-Reported Prevalence of Kidney Stones in Trinidad and Tobago: Results of a Cross-Sectional Online Survey.
Cureus: 2024 Apr, 16(4);e57651
[PubMed:38707028] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ghosh Moulic A, Deshmukh P, Gaurkar SS
A Comprehensive Review on Biofilms in Otorhinolaryngology: Understanding the Pathogenesis, Diagnosis, and Treatment Strategies.
Cureus: 2024 Apr, 16(4);e57634
[PubMed:38707023] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Caton S, Hatton C, Gillooly A, Oloidi E, Clarke L, Bradshaw J, Flynn S, Taggart L, Mulhall P, Jahoda A, Maguire R, Marriott A, Todd S, Abbott D, Beyer S, Gore N, Heslop P, Scior K, Hastings RP
Online social connections and Internet use among people with intellectual disabilities in the United Kingdom during the COVID-19 pandemic.
New Media Soc: 2024 May, 26(5);2804-2828
[PubMed:38706952] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Mondkar S, Khandagale S, Shah N, Khadilkar A, Oza C, Bhor S, Gondhalekar K, Wagle A, Kajale N, Khadilkar V
Effect of metformin adjunct therapy on cardiometabolic parameters in Indian adolescents with type 1 diabetes: a randomized controlled trial.
Front Clin Diabetes Healthc: 2024, 5;1353279
[PubMed:38706949] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Chakraborty G, Balinin K, Villar-Guerra RD, Emondts M, Portale G, Loznik M, Niels Klement WJ, Zheng L, Weil T, Chaires JB, Herrmann A
Supramolecular DNA-based catalysis in organic solvents.
iScience: 2024 May 17, 27(5);109689
[PubMed:38706840] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jawed A, Hogan A
Is social media our new quitline? A descriptive study assessing youtube coverage of tobacco cessation.
J Prev Med Hyg: 2024 Mar, 65(1);E25-E35
[PubMed:38706763] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Simonetti O, Cosimi L, Cigana M, Penco A, DI Bella S, Martini M
Balto and Togo during the cold winter of Alaska (1925): the two canine heroes in the fight against diphtheria.
J Prev Med Hyg: 2024 Mar, 65(1);E98-E104
[PubMed:38706760] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Prasad PS, Pasha MB, Rao RN, Rao PV, Madaboosi N, Özcan M
A Review on Enhancing the Life of Teeth by Toothpaste Containing Bioactive Glass Particles.
Curr Oral Health Rep: 2024, 11(2);87-94
[PubMed:38706577] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Thakurdesai A, Rivera-Matos L, Nagra N, Busch B, Mais DD, Cave MC
Severe Drug-Induced Liver Injury Due to Self-administration of the Veterinary Anthelmintic Medication, Fenbendazole.
ACG Case Rep J: 2024 May, 11(5);e01354
[PubMed:38706451] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Bn L, Deshpande AD, Shukla S, Emmanuel RS, Singh A, Thirupathi Y, Singh V, Saikumar G, Chandra V, Sharma GT
Exploring the therapeutic potential of allogeneic amniotic membrane for quality wound healing in rabbit model.
Am J Reprod Immunol: 2024 May, 91(5);e13853
[PubMed:38706383] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Song Y, Do YK
Patient Experience and Nurse Staffing Level in South Korea.
Int J Qual Health Care: 2024 May 4;
[PubMed:38706179] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ellis K, Wood R
Research priorities of endometriosis patients and supporters in Aotearoa New Zealand.
Aust N Z J Obstet Gynaecol: 2024 May 5;
[PubMed:38706178] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Teräsjärvi J, Kainulainen L, Peltola V, Mertsola J, Hakanen A, He Q
Genetic polymorphisms of TLR1, TLR2, TLR3 and TLR4 in patients with recurrent or severe infections.
Int J Immunogenet: 2024 May 5;
[PubMed:38706134] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Limbu YB, McKinley C
Communication Strategies to Promote COVID-19 Vaccination Intention: How Effective are Source, Appeal, Framing, and Evidence Type Approaches?
Health Commun: 2024 May 5;1-16
[PubMed:38706043] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Giri NA, Bhangale A, Gaikwad NN, Manjunatha N, Raigond P, Marathe RA
Comparative study on effect of pomegranate peel powder as natural preservative and chemical preservatives on quality and shelf life of muffins.
Sci Rep: 2024 May 5, 14(1);10307
[PubMed:38705878] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Baker IR, Girguis PR
Sulfur cycling likely obscures dynamic biologically-driven iron redox cycling in contemporary methane seep environments.
Environ Microbiol Rep: 2024 Jun, 16(3);e13263
[PubMed:38705733] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Curtis GH, Reeve RE, Crespi EJ
Leptin signaling promotes blood vessel formation in the Xenopus tail during the embryo-larval transition.
Dev Biol: 2024 May 3;
[PubMed:38705558] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang Y, Wang M, Zhou X, Cheng W, Ren J, Wan T, Liu X
Transmission mechanism of antibiotic resistance genes and their differences between water and sediment in the Weihe River Basin.
Environ Res: 2024 May 3;119057
[PubMed:38705450] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Safenraider Crema AP, Müller D, Horn A Jr, Debacher NA
Plasma catalysis. A study of the influence of Oxysulfur, SO(x)(•) species through the degradation of sulfonated dyes by non-thermal plasma.
Chemosphere: 2024 May 3;142230
[PubMed:38705412] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tubita A, Menconi A, Lombardi Z, Tusa I, Esparís-Ogando A, Pandiella A, Gamberi T, Stecca B, Rovida E
Latent-transforming growth factor β-binding protein 1/Transforming growth factor β1 complex drives antitumoral effects upon ERK5 targeting in melanoma.
Am J Pathol: 2024 May 3;
[PubMed:38705382] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Iwegbue CMA, Ossai CJ, Ogwu IF, Olisah C, Ujam OT, Nwajei GE, Martincigh BS
Organochlorine pesticide contamination of soils and dust from an urban environment in the Niger Delta of Nigeria.
Sci Total Environ: 2024 May 3;172959
[PubMed:38705302] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Patel AA, Júnior de Andrade E, Srivatsa S, Recinos PF
Exoscopic retrosigmoid approach for an antero-medial tentorial meningioma: 2-D Operative Video.
World Neurosurg: 2024 May 3;
[PubMed:38705270] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sánchez Herrera M, Forero D, Calor AR, Romero GQ, Riyaz M, Callisto M, de Oliveira Roque F, Elme-Tumpay A, Khan MK, Justino de Faria AP, Pires MM, Silva de Azevêdo CA, Juen L, Zakka U, Samaila AE, Hussaini S, Kemabonta K, Guillermo-Ferreira R, Ríos-Touma B, Maharaj G
Systematic challenges and opportunities in insect monitoring: a Global South perspective.
Philos Trans R Soc Lond B Biol Sci: 2024 Jun 24, 379(1904);20230102
[PubMed:38705182] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Uski OJ, Rankin GD, Wingfors H, Magnusson R, Boman C, Muala A, Blomberg A, Bosson J, Sandström T
In vitro toxicity evaluation in A549 cells of diesel particulate matter from two different particle sampling systems and several resuspension media.
J Appl Toxicol: 2024 May 5;
[PubMed:38705171] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tinoco-Tafolla HA, López-Hernández J, Ortiz-Castro R, López-Bucio J, Reyes de la Cruz H, Campos-García J, López-Bucio JS
Sucrose supplements modulate the Pseudomonas chlororaphis-Arabidopsis thaliana interaction via decreasing the production of phenazines and enhancing the root auxin response.
J Plant Physiol: 2024 May 1, 297;154259
[PubMed:38705079] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yang T, Duan H, Nian H, Wang P, Yan C, Cao F, Li Q, Cao L
Unraveling the structure-chirality sensing relationship between achiral anthracene-based tetracationic nanotubes and nucleosides in aqueous host-guest complexation.
Biosens Bioelectron: 2024 May 1, 258;116342
[PubMed:38705071] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Murphy M, Carrión RE, Rubio J, Malhotra AK
Peak alpha frequency and electroencephalographic microstates are correlated with aggression in schizophrenia.
J Psychiatr Res: 2024 Apr 29, 175;60-67
[PubMed:38704982] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wilkinson C, Liu CYJ, Shrimpton S, Greenway E
Craniofacial identification standards: A review of reliability, reproducibility, and implementation.
Forensic Sci Int: 2024 Mar 23, 359;111993
[PubMed:38704925] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Friedrich HKJ, Michalke B, Karst U, Michaelis V
Using L-cysteine to enhance calibration range and prevent a memory effect in mercury analysis of complex samples via ICP-OES.
J Trace Elem Med Biol: 2024 Apr 27, 84;127467
[PubMed:38704916] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Takahashi M, Sawada Y, Aoyagi H
A forced aeration system for microbial culture of multiple shaken vessels suppresses volatilization.
Arch Microbiol: 2024 May 5, 206(6);246
[PubMed:38704767] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Clausen MC, Printz T, Nikoghosyan-Bossen G
The influence of tight tongue-ties and tongue-tie clips on speech development.
Ugeskr Laeger: 2024 Apr 29, 186(18);
[PubMed:38704717] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Erickson SJ, Yabes JG, Han Z, Roumelioti ME, Rollman BL, Weisbord SD, Steel JL, Unruh ML, Jhamb M
Associations Between Social Support and Patient-Reported Outcomes in Hemodialysis Patients: Results from the TACcare Study.
Kidney360: 2024 May 3;
[PubMed:38704664] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ni J, Ye D, Zeng W, Ma S, Wang Z, Kuang Y, Yang L
Promotion of hair growth by a conditioned medium from human umbilical cord mesenchymal stem cells cultivated in a 3D scaffold of gelatin sponge.
Eur J Med Res: 2024 May 4, 29(1);270
[PubMed:38704575] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Rolke K, Walter J, Weckbecker K, Münster E, Tillmann J
Identifying gaps in healthcare: a qualitative study of Ukrainian refugee experiences in the German system, uncovering differences, information and support needs.
BMC Health Serv Res: 2024 May 4, 24(1);585
[PubMed:38704571] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Saeidnia HR, Kozak M, Lund BD, Hassanzadeh M
Evaluation of ChatGPT's responses to information needs and information seeking of dementia patients.
Sci Rep: 2024 May 4, 14(1);10273
[PubMed:38704403] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dalton BA, Kiefer H, Netz RR
The role of memory-dependent friction and solvent viscosity in isomerization kinetics in viscogenic media.
Nat Commun: 2024 May 4, 15(1);3761
[PubMed:38704367] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Dhalaria P, Kumar P, Verma A, Priyadarshini P, Kumar Singh A, Tripathi B, Taneja G
Exploring landscape of measles vaccination coverage: A step towards measles elimination goal in India.
Vaccine: 2024 May 3;
[PubMed:38704248] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Takagi K, Yamada M, Umeda Y
Left posterior superior mesenteric artery approach using a hanging maneuver in robotic pancreaticoduodenectomy.
J Gastrointest Surg: 2024 May, 28(5);786-788
[PubMed:38704215] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Goeteyn J, Teijink SBJ, Pesser N, van Sambeek MRHM, van Nuenen BFL, Teijink JAW
Trans-axillary thoracic outlet decompression.
Semin Vasc Surg: 2024 Mar, 37(1);66-73
[PubMed:38704186] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Mohammad A, Madhavarao CN
Comparing nitric acid treatment and microwave digestion for efficiency of metal extraction from bioprocess samples.
Anal Biochem: 2024 May 2;115555
[PubMed:38704117] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Foroughi M, Arzehgar A, Seyedhasani SN, Nadali A, Zoroufchi Benis K
Application of machine learning for antibiotic resistance in water and wastewater: A systematic review.
Chemosphere: 2024 May 2;142223
[PubMed:38704045] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Takagi K, Yasui K, Fuji T
Usefulness of Robotic-arm Hopping Technique in Robotic Left Hemihepatectomy.
J Gastrointest Surg: 2024 May 2;
[PubMed:38703988] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Li JY, Yao S, Mo Z, Miao Y, Chen Y, He W, Jin L, Tang W
Submerged plant-biochar composite system exhibits effective control over residual organic pollutants in the benthic organisms of aquaculture ponds.
Environ Pollut: 2024 May 2;124078
[PubMed:38703986] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wu D, Chen L, Zong X, Jiang F, Wang X, Xu M, Ai F, Du W, Yin Y, Guo H
Elevated CO(2) exacerbates the risk of methylmercury exposure in consuming aquatic products: Evidence from a complex paddy wetland ecosystem.
Environ Pollut: 2024 May 2;124095
[PubMed:38703984] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Xu D, Ji Y, Du B, He B, Chen H, Sun H, Yin X
The synergistic effect of typical chiral organic acids and solution chemistry conditions on the transport of 2-arylpropionic acid chiral derivatives in porous media.
Environ Pollut: 2024 May 2;124059
[PubMed:38703979] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yang YT
Protecting humanitarian aid workers: an urgent call.
Lancet: 2024 May 1;
[PubMed:38703780] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Su D, Wang X, Liu X, Miao J, Zhang Z, Zhang Y, Zhao L, Yu Y, Leng K, Yu Y
A comprehensive study of the colloidal properties, biocompatibility, and synergistic antioxidant actions of Antarctic krill phospholipids.
Food Chem: 2024 Apr 24, 451;139469
[PubMed:38703727] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Carroll JH, Parkin T, Cross JH, Hickson M, Williams E, Aldridge V, Collinson A
Drug-resistant epilepsy and ketogenic diet therapy - a qualitative study of families' experiences.
Seizure: 2024 Apr 26, 118;137-147
[PubMed:38703599] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ma J, Zhang T, Li J, Tian Y, Sun C
Superhydrophilic/superaerophobic CoP/CoMoO(4) multi-level hierarchitecture electrocatalyst for urea-assisted hydrogen evolution reaction in alkaline media.
J Colloid Interface Sci: 2024 May 1, 669;43-52
[PubMed:38703581] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yan T, Lang S, Liu S, Wang S, Lin S, Cai Q, Zhao J
Strong interactions through the highly polar "Early-Late" metal-metal bonds enable single-atom catalysts good durability and superior bifunctional ORR/OER activity.
J Colloid Interface Sci: 2024 Apr 24, 669;32-42
[PubMed:38703580] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kim E, Baek G, Jo H, Kim J, Cho A, Byun M
Nurses' media competency: A concept analysis.
Nurse Educ Today: 2024 Apr 30, 139;106232
[PubMed:38703536] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ryan CD, Griffin BT, O'Shea JP
Rationalizing Counterion Selection for the Development of Lipophilic Salts: A Case Study with Venetoclax.
Mol Pharm: 2024 May 4;
[PubMed:38703358] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tang LK, Yobas P, Wong DNX, Pikkarainen M, Zhang R, Ho D, He HG
Personal and work-related factors associated with post-traumatic growth in nurses: A mixed studies systematic review.
J Nurs Scholarsh: 2024 May 4;
[PubMed:38703352] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang F, Chen L, Xu B, Ma J, Xing B, Su F, Shi C
Characterization of the migration of organic contaminants in laboratory-scale groundwater polluted by underground coal gasification.
Environ Sci Pollut Res Int: 2024 May 4;
[PubMed:38703318] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Arishi AA, Hakami IA, Mashbari HN, Hobani AH, Al-Musawa HI, Abuhadi RI, Maslouf AH, Matari MH, Albrahim HT, Algarni MA, Iskander O, Alyahyawi K
Knowledge, attitude, and perception of robotic-assisted surgery among the general population in Saudi Arabia: a cross-sectional study.
J Robot Surg: 2024 May 4, 18(1);196
[PubMed:38703278] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Ye Y, Yan X, Luo H, Kang J, Liu D, Ren Y, Ngo HH, Guo W, Cheng D, Jiang W
Comparative study of the removal of sulfate by UASB in light and dark environment.
Bioprocess Biosyst Eng: 2024 May 4;
[PubMed:38703203] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Keltsch NG, Gazanis A, Dietrich C, Wick A, Heermann R, Tremel W, Ternes TA
Development of an analytical method to quantify N-acyl-homoserine lactones in bacterial cultures, river water, and treated wastewater.
Anal Bioanal Chem: 2024 May 4;
[PubMed:38703199] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bartlett ER, Borkowski AK, Nilles CK, Blakemore JD, Thompson WH
Entropy Drives Accelerated Ion Diffusion upon Carbon Dioxide Expansion of Electrolytes.
J Phys Chem B: 2024 May 4;
[PubMed:38703113] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Jamali SS, Somerville SV, Dief EM, Gooding JJ
Stochastic Electrochemical Measurement of a Biofouling Layer on Gold.
Anal Chem: 2024 May 3;
[PubMed:38702865] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Paulino S, Petek S, le Strat Y, Bourgougnon N, Le Blay G
Cultivable epiphytic bacteria of the Chlorophyta Ulva sp. : diversity, antibacterial and biofilm-modulating activities.
J Appl Microbiol: 2024 May 3;
[PubMed:38702839] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

De Sousa PA, Perfect L, Ye J, Samuels K, Piotrowska E, Gordon M, Mate R, Abranches E, Wishart TM, Dockrell DH, Courtney A
Hyaluronan in mesenchymal stromal cell lineage differentiation from human pluripotent stem cells: application in serum free culture.
Stem Cell Res Ther: 2024 May 3, 15(1);130
[PubMed:38702837] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Li S, Chen X, Liu L, Sun C
The relationship between social withdrawal and problematic social media use in Chinese college students: a chain mediation of alexithymia and negative body image.
BMC Psychol: 2024 May 3, 12(1);246
[PubMed:38702805] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Chu W, Zhang F, Zeng X, He F, Shang G, Guo T, Wang Q, Wu J, Li T, Zhong ZZ, Liang X, Hu J, Liu M
A GMP-compliant manufacturing method for Wharton's jelly-derived mesenchymal stromal cells.
Stem Cell Res Ther: 2024 May 3, 15(1);131
[PubMed:38702793] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhang X, Leng S, Liu X, Hu X, Liu Y, Li X, Feng Q, Guo W, Li N, Sheng Z, Wang S, Peng J
Ion channel Piezo1 activation aggravates the endothelial dysfunction under a high glucose environment.
Cardiovasc Diabetol: 2024 May 3, 23(1);150
[PubMed:38702777] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Burdet H, Xanthos A, Marques-Vidal P
Women are lean and men are also lean: nutrition titles in women's and men's health magazines.
BMC Public Health: 2024 May 3, 24(1);1230
[PubMed:38702675] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lin X, Chen X, Chen Y, Xu P, Chen S
Sleep initiation patterns and sleep quality among toddlers in the southeast of China: initial study results.
BMC Pediatr: 2024 May 3, 24(1);298
[PubMed:38702673] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yousaf T, Saleem F, Andleeb S, Ali M, Farhan Ul Haque M
Methylotrophic bacteria from rice paddy soils: mineral-nitrogen-utilizing isolates richness in bulk soil and rhizosphere.
World J Microbiol Biotechnol: 2024 May 4, 40(6);188
[PubMed:38702590] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Stoye E
Mount Etna's spectacular smoke rings and more - April's best science images.
Nature: 2024 May 3;
[PubMed:38702579] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ochoa-Viñals N, Alonso-Estrada D, Faife-Pérez E, Chen Z, Michelena-Alvarez G, Martínez-Hernández JL, García-Cruz A, Ilina A
β-Carotene production from sugarcane molasses by a newly isolated Rhodotorula toruloides L/24-26-1.
Arch Microbiol: 2024 May 3, 206(6);245
[PubMed:38702537] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lee S, Kim J, You JS, Hyun YM, Kim JY, Lee JE
Ischemic stroke outcome after promoting CD4+CD25+ Treg cell migration through CCR4 overexpression in a tMCAO animal model.
Sci Rep: 2024 May 3, 14(1);10201
[PubMed:38702399] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Rogulska O, Vackova I, Prazak S, Turnovcova K, Kubinova S, Bacakova L, Jendelova P, Petrenko Y
Storage conditions affect the composition of the lyophilized secretome of multipotent mesenchymal stromal cells.
Sci Rep: 2024 May 3, 14(1);10243
[PubMed:38702388] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Fitzgerald MQ, Chu T, Puppo F, Blanch R, Chillón M, Subramaniam S, Muotri AR
Generation of 'semi-guided' cortical organoids with complex neural oscillations.
Nat Protoc: 2024 May 3;
[PubMed:38702386] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Loopstra R
Growth in UK children living in households with food insecurity.
BMJ: 2024 May 3, 385;q997
[PubMed:38702058] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Grocholl J, Ferguson M, Hughes S, Trujillo S, Burall LS
Listeria monocytogenes contamination leads to survival and growth during enoki mushroom cultivation.
J Food Prot: 2024 May 1;100290
[PubMed:38701973] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Andrés EÁ, de Miguel E, de Yébenes MJG, Carmona L, Miranda CG, Ramos PC, de la Peña Lefebvre PG
Relationship between nailfold videocapillaroscopic findings and cardiovascular risk factors.
Microvasc Res: 2024 May 1;104693
[PubMed:38701966] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Xie T, Liu T, Lian B, Qian T, Chen C, Xu C, Liang P, Yang S, Wang R, Chen K, Zhang A, Zhu J
Leaching behaviour of (226)Ra from uranium tailings and adsorption behaviour in geotechnical medias.
Environ Pollut: 2024 May 1;124062
[PubMed:38701963] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Linder AC, Lusseau D
Resilience of human-nature interaction network to pandemic conditions.
Sci Total Environ: 2024 May 1;172813
[PubMed:38701924] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hassan LF, Sen R, O'Shea TM
Trehalose-based coacervates for local bioactive protein delivery to the central nervous system.
Biomaterials: 2024 Apr 27, 309;122594
[PubMed:38701641] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Garcia-Llorens J, Garcia C, Paulet P, Le-Tallec B, Dauphin G, Comte S, Catalá-Gregori P, Simon F, Sevilla-Navarro S, Sarabia J
Research Note: Validation of a new differentiation approach using the commercial ASAP(TM) media to detect the Salmonella 441/014 vaccine strain.
Poult Sci: 2024 Mar 26, 103(6);103679
[PubMed:38701627] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Custers PA, Beets GL, Bach SP, Blomqvist LK, Figueiredo N, Gollub MJ, Martling A, Melenhorst J, Ortega CD, Perez RO, Smith JJ, Lambregts DMJ, Beets-Tan RGH, Maas M
An International Expert-Based Consensus on the Definition of a Clinical Near-Complete Response After Neoadjuvant (Chemo)radiotherapy for Rectal Cancer.
Dis Colon Rectum: 2024 Jun 1, 67(6);782-795
[PubMed:38701503] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Gavassino L, Disconzi M, Noronha J
Dispersion Relations Alone Cannot Guarantee Causality.
Phys Rev Lett: 2024 Apr 19, 132(16);162301
[PubMed:38701454] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Arnone AA, Wilson AS, Soto-Pantoja DR, Cook KL
Diet modulates the gut microbiome, metabolism, and mammary gland inflammation to influence breast cancer risk.
Cancer Prev Res (Phila): 2024 May 3;
[PubMed:38701438] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hu R, Xia L, Shi C, Zhou Y, Guo X
Otitis media with effusion in preschool children with adenoid hypertrophy: Risk factors and nursing care.
Nurs Open: 2024 May, 11(5);e2165
[PubMed:38701327] [WorldCat.org: ISSN ESSN ] [DOI] ( p)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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