ISA

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An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Matsuda N, Tanida J, Naruse M, Horisaki R
Noninvasive holographic imaging through dynamically scattering media.
Opt Lett: 2024 May 1, 49(9);2389-2392
[PubMed:38691726] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Xie Z, Zhu M, Lin W, Huang G, Ge Y, Hu Y, Jin X, Xu M
Reciprocal polarization imaging of optical activity in reflection.
Opt Lett: 2024 May 1, 49(9);2349-2352
[PubMed:38691716] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Cui L, Jia Z, Wang J, Zhang C, Tian F, Meng F, Ohishi Y, Qin W, Qin G
Widely tunable S-band ring-cavity Tm(3+)-doped fluorotellurite fiber laser.
Opt Lett: 2024 May 1, 49(9);2333-2336
[PubMed:38691712] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Hao R, Zeng N, Zhang Z, He H, He C, Ma H
Polarization feature fusion and calculation of birefringence dynamics in complex anisotropic media.
Opt Lett: 2024 May 1, 49(9);2273-2276
[PubMed:38691697] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Bodtger U, Porcel JM, Bhatnagar R, Maskell N, Munavvar M, Jensen C, Clementsen PF, Rasmussen DB
Erratum: Local Anesthetic Thoracoscopy for Undiagnosed Pleural Effusion.
J Vis Exp: 2024 Jan 5, (203);
[PubMed:38691626] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Hu X, Yin R, Jeong J, Matyjaszewski K
Robust Miniemulsion PhotoATRP Driven by Red and Near-Infrared Light.
J Am Chem Soc: 2024 May 1;
[PubMed:38691625] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ali SF, Masood N
Evaluation of adjective and adverb types for effective Twitter sentiment classification.
PLoS One: 2024, 19(5);e0302423
[PubMed:38691567] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ota K, Maloney LT
Dissecting Bayes: Using influence measures to test normative use of probability density information derived from a sample test.
PLoS Comput Biol: 2024 May 1, 20(5);e1011999
[PubMed:38691544] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Madhugiri VS, Venkatesan S
Does Reader Engagement with Neurosurgery Journal Websites Correlate with the Number of Citations Received by Articles?
Neurol India: 2024 Mar 1, 72(2);352-357
[PubMed:38691481] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Smith L
Integrating the Physical Environment Within a Population Neuroscience Perspective.
Curr Top Behav Neurosci: 2024 May 2;
[PubMed:38691314] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wu P, Salmaniw Y, Wang X
Threshold dynamics of a reaction-advection-diffusion schistosomiasis epidemic model with seasonality and spatial heterogeneity.
J Math Biol: 2024 Apr 30, 88(6);76
[PubMed:38691213] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Yang Y, Wang H, Si J, Zhang L, Ding H, Wang F, He L, Chen X
Predicting response of hepatoblastoma primary lesions to neoadjuvant chemotherapy through contrast-enhanced computed tomography radiomics.
J Cancer Res Clin Oncol: 2024 Apr 30, 150(5);223
[PubMed:38691204] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Xu ZQ, Li XZ, Zhu R, Ge R, Wei H, Shi HW, Wang Z, Yang C, Yang YW, Lu XJ, Chen AD, Zhu GQ, Tan X
Asprosin contributes to vascular remodeling in hypertensive rats via superoxide signaling.
J Hypertens: 2024 Apr 23;
[PubMed:38690935] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ayebeng C, Okyere J, Dickson KS
Influence of type of cooking fuel on risk of hypertension among reproductive-age women in sub-Saharan Africa: insights from nationally representative cross-sectional surveys.
Int Health: 2024 May 1, 16(3);325-333
[PubMed:38690923] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ferreira MV, Naranjo E, Denis N, Cobine P, De La Fuente L, Siri MI
Calcium modulation of bacterial wilt disease on potato.
Appl Environ Microbiol: 2024 May 1;e0024224
[PubMed:38690890] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Franco LC, Ahmed M, Kendra CG, Sperling RM, Van Benten K, Lavik J-P, Emery CL, Relich RF, Gavina K
Validation of a qualitative real-time PCR assay for the detection of Candida auris in hospital inpatient screening.
J Clin Microbiol: 2024 May 1;e0015824
[PubMed:38690882] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Noël N, Martinez A, Massicot F, Vasse JL, Behr JB
Kinetics of Strain-Promoted Alkyne-Nitrone Cycloadditions (SPANC) with Unprotected Carbohydrate Scaffolded Nitrones.
Org Lett: 2024 May 1;
[PubMed:38690807] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hara A, Yokouchi H
Simply designed robotic combined subsegmentectomy for a lesion in the left S10 via a posterior approach.
Multimed Man Cardiothorac Surg: 2024 May 1, 2024;
[PubMed:38690776] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mughal AZ, El-Zeki A, Oliemy A, Habib AM
Manubriectomy made easy.
Multimed Man Cardiothorac Surg: 2024 May 1, 2024;
[PubMed:38690721] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Abumiya T, Fujimura M
Moyamoya Vasculopathy and Moyamoya-Related Systemic Vasculopathy: A Review With Histopathological and Genetic Viewpoints.
Stroke: 2024 May 1;
[PubMed:38690664] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Almidani S, Abo Hilal M, Alghadban M, Abou Helal O, Alkourdi M, Kannan J, Ekzayez A, Patel P, El Achi N
Demographics and risk factors for suicide in Syria: A retrospective media content analysis of online news sources.
Glob Ment Health (Camb): 2024, 11;e50
[PubMed:38690572] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ullah I, Asghar MZ, Barbera E, Cimen M
Integrating social media-based community of inquiry with theory of planned behavior to promote equitable educational intentions among pre-service teachers in Gilgit Baltistan, Pakistan.
Front Psychol: 2023, 14;1150421
[PubMed:38690526] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Panchamia J, Sinha A, Pandya A
From Campus to Crisis: Psychological Effect of the COVID-19 Pandemic on Indian Management Students.
Cureus: 2024 Mar, 16(3);e57330
[PubMed:38690473] [WorldCat.org: ISSN ESSN ] [DOI] ( )

AlAbdullah G, Al Ahmed F, Alatiyyah ZJ, Alibraheem G, Almuqahwi A
Barriers Impact the Primary Healthcare Providers When Dealing With Emergency Cases: A Cross-Sectional Study in Al-Ahsa, Saudi Arabia.
Cureus: 2024 Mar, 16(3);e57344
[PubMed:38690472] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ahmed S, Jehad Hassan S, Gajdhar S, Saleh Alhazmi L, Yahya Khalifah R, Alhusain Alrifai J, Salem Aljhdali S, Sheriff Maqbul M
Prevalence of Enterococcus faecalis and Candida albicans in endodontic retreatment Cases: A comprehensive study.
Saudi Dent J: 2024 Apr, 36(4);539-545
[PubMed:38690386] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Machackova H, Jaron Bedrosova M, Muzik M, Zlamal R, Fikrlova J, Literova A, Dufkova E, Smahel D, Boomgaarden H, Song H, Tolochko P, d'Haenens L, Joris W, Kalmus V, Tikerperi ML, Opermann S, Napp M, Soidla I, Uibos A, Soo K, Salmela-Aro K, Järvinen J, Mannerström R, Suvila E, Waechter N, Brando C, Kadera S, Mascheroni G, Cino D, Lombi L, van Deursen A, van Laar E, Pyżalski J, Walter N, Iwanicka A, Ponte C, Batista S, Baptista R, Schneider L, Helsper EJ
Digital skills among youth: A dataset from a three-wave longitudinal survey in six European countries.
Data Brief: 2024 Jun, 54;110396
[PubMed:38690314] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ibrahim IA, Mohamed MHM, Alenezi A
Exploring the linkages between social media use, self-esteem, and academic performance among nursing students in Saudi Arabia: A descriptive correlational study.
Belitung Nurs J: 2024, 10(2);152-159
[PubMed:38690305] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ventura T, Fidanza A, Wilson MC, Ferguson DCJ, Lewis PA, May A, Taylor H, Rimmer MP, Gregory CD, Frayne J, Forrester LM
Proteomic analysis reveals a potential role for extracellular vesicles within the erythroblastic island niche.
Front Mol Biosci: 2024, 11;1370933
[PubMed:38690294] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Goin-Kochel RP, Lozano I, Duhon G, Marzano G, Daniels A, Law JK, Diehl K, Green Snyder L, Feliciano P, Chung WK, SPARK Consortium
Evidence-based recruitment strategies for clinical research: Study personnel's and research participants' perceptions about successful methods of outreach for a U.S. Autism-Research Cohort.
J Clin Transl Sci: 2024, 8(1);e65
[PubMed:38690223] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Every-Palmer S, Hansby O, Barry-Walsh J
Stalking, harassment, gendered abuse, and violence towards politicians in the COVID-19 pandemic and recovery era.
Front Psychiatry: 2024, 15;1357907
[PubMed:38690205] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Adachi E, Otani A, Yotsuyanagi H, Saijo M, Saito T
Crisis management for the future: Building a platform to provide information on emerging and re-emerging infectious diseases from normal times in Japan.
Glob Health Med: 2024 Apr 30, 6(2);156-159
[PubMed:38690136] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Battista D
Political reconfiguration in the social space: data analysis and future perspective.
Front Sociol: 2023, 8;1226509
[PubMed:38690123] [WorldCat.org: ISSN ESSN ] [DOI] ( )

El Amir D, Sayed AM, El-Hawary SS, Elsakhawy OM, Attia EZ, Abdelmohsen UR, Mohammed R
Metabolomic profiling of Medicago sativa-derived fungal endophytes and evaluation of their biological activities.
RSC Adv: 2024 Apr 25, 14(20);14296-14302
[PubMed:38690109] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Choi YJ, Eom H, Park J, Park J, Cheon S, Ro HS
Fungal Diversity in Nam River and Their Biodegradative Activities.
Mycobiology: 2024, 52(2);102-110
[PubMed:38690029] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ribeiro Tomé LM, Dornelles Parise MT, Parise D, de Carvalho Azevedo VA, Brenig B, Badotti F, Góes-Neto A
Pure lignin induces overexpression of cytochrome P450 (CYP) encoding genes and brings insights into the lignocellulose depolymerization by Trametes villosa.
Heliyon: 2024 Apr 15, 10(7);e28449
[PubMed:38689961] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Rong Y, Li J
The role played by insider transfer information in esports coverage.
Front Sports Act Living: 2024, 6;1346984
[PubMed:38689872] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Salim FA, Postma DBW, Haider F, Luz S, van Beijnum BF, Reidsma D
Enhancing volleyball training: empowering athletes and coaches through advanced sensing and analysis.
Front Sports Act Living: 2024, 6;1326807
[PubMed:38689871] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Pàmies A, Llop D, Ibarretxe D, Rosales R, Masana L, Vallvé JC, Paredes S
Angiopoietin-2, vascular endothelial growth factor family, and heparin binding endothelial growth factor are associated with subclinical atherosclerosis in rheumatoid arthritis.
Comput Struct Biotechnol J: 2024 Dec, 23;1680-1688
[PubMed:38689721] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Waring ME, Arigo D, Rudin LR, Pagoto SL, Moore Simas TA, Horkachuck AB
Interest in an Instagram-delivered gestational weight gain intervention among pregnant women with pre-pregnancy overweight or obesity.
Mhealth: 2024, 10;12
[PubMed:38689614] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Aboelsayed KMS, Abdel Razek MK, Assal S, Habib AMA, Negm RA
Effect of prosthetic management and its timing on otological and audiological outcomes in infants with cleft lip and palate: A clinical trial.
J Prosthodont: 2024 Apr 30;
[PubMed:38689452] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nieto V, VanDuine S, Peltz K, Rulli D
Oral health statuses of individuals diagnosed with gastroparesis: A Cross-Section study.
Int J Dent Hyg: 2024 Apr 30;
[PubMed:38689384] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Slavec A, Iwanowska M, Bałandynowicz-Panfil K, Olah Ș, Zvonar MŠ, Štebe J, Łosiewicz M
Determinants of COVID-19 vaccination intention in Central and Eastern Europe: A cross-sectional study in Poland, Romania, and Slovenia.
Arch Public Health: 2024 Apr 30, 82(1);60
[PubMed:38689314] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jibril MK, Yimam AA, Abdu NR, Ali SY
Psychological impact and associated factors of the COVID-19 pandemic among pregnant women in Fafan Zone health institutions, Somali Region, Eastern Ethiopia, 2021.
BMC Womens Health: 2024 Apr 30, 24(1);270
[PubMed:38689303] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Barnes A, Toson B, Bryant RV, Mukherjee S, Andrews JM, Spizzo P, Mountifield R
Latent profiles of fatigue in inflammatory bowel disease.
BMC Gastroenterol: 2024 Apr 30, 24(1);148
[PubMed:38689277] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Jones HE, Manze M, Brakman A, Kwan A, Davies M, Romero D
Physician engagement in reproductive health advocacy: findings from a mixed methods evaluation of a leadership and advocacy program.
BMC Med Educ: 2024 Apr 30, 24(1);476
[PubMed:38689263] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Eitze S, Felgendreff L, Horstkötter N, Seefeld L, Betsch C
Exploring pre-pandemic patterns of vaccine decision-making with the 5C model: results from representative surveys in 2016 and 2018.
BMC Public Health: 2024 Apr 30, 24(1);1205
[PubMed:38689253] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Müller-Franzes G, Huck L, Bode M, Nebelung S, Kuhl C, Truhn D, Lemainque T
Diffusion probabilistic versus generative adversarial models to reduce contrast agent dose in breast MRI.
Eur Radiol Exp: 2024 May 1, 8(1);53
[PubMed:38689178] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim HJ, Jang J, Na K, Lee EH, Gu HJ, Lim YH, Joo SA, Baek SE, Roh JY, Maeng HJ, Kim YH, Lee YJ, Oh BC, Jung Y
TLR7-dependent eosinophil degranulation links psoriatic skin inflammation to small intestinal inflammatory changes in mice.
Exp Mol Med: 2024 May 1;
[PubMed:38689088] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang C, Bai YX, Li XW, Lin LT
Effects of extreme temperatures on public sentiment in 49 Chinese cities.
Sci Rep: 2024 Apr 30, 14(1);9954
[PubMed:38688992] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mokhtariazar A, Hassani AH, Borghei M, Massoudinejad M
A comparative study on performance of the conventional and fixed-bed membrane bioreactors for treatment of Naproxen from pharmaceutical wastewater.
Sci Rep: 2024 Apr 30, 14(1);9944
[PubMed:38688946] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kalvas LB, Harrison TM
Sources of Sound Exposure in Pediatric Critical Care.
Am J Crit Care: 2024 May 1, 33(3);202-209
[PubMed:38688851] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Higaki F, Morimitsu Y, Iguchi T, Saito H, Takaki H, Nakagoshi A, Wada M, Uka M, Akagi N, Mitsuhashi T, Matsui Y, Hiraki T
Photon-Counting Detector CT: Potential for 75% Reduction in Contrast Medium Amount: A Phantom Study.
Acta Med Okayama: 2024 Apr, 78(2);135-142
[PubMed:38688831] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Diamond-Smith N, Gopalakrishnan L, Leslie H, Katz E, Harper C, Weiser S, Patil SR
Life skills and reproductive health empowerment intervention for newly married women and their families to reduce unintended pregnancy in India: protocol for the TARANG cluster randomised controlled trial.
BMJ Open: 2024 Apr 30, 14(4);e086778
[PubMed:38688674] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mafi A, Naqvi H, L'Esperance V
Taking racism out of clinical guidelines.
BMJ: 2024 Apr 30, 385;q942
[PubMed:38688551] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Evans JP, Smith CD, Evans JT
Choosing the best shoulder replacement.
BMJ: 2024 Apr 30, 385;q952
[PubMed:38688527] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Galloway AM, Keene DJ, Anderson A, Holton C, Redmond AC, Siddle HJ, Richards S, Perry DC
Clinical consensus recommendations for the non-surgical treatment of children with Perthes' disease in the UK.
Bone Joint J: 2024 May 1, 106-B(5);501-507
[PubMed:38688522] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Cao XY, Liu Y, Kan JS, Huang XX, Kambey PA, Zhang CT, Gao J
Microglial SIX2 suppresses lipopolysaccharide (LPS)-induced neuroinflammation by up-regulating FXYD2 expression.
Brain Res Bull: 2024 Apr 28;110970
[PubMed:38688414] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Zhang Q, Li Y, Liu Y, Wang X, Yang Y, Shi L
The cGAS/STING signaling pathway is involved in sevoflurane induced neuronal necroptosis via regulating microglia M1 polarization.
Cell Signal: 2024 Apr 28;111195
[PubMed:38688381] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ai M, Liu X, Lin Y, Deng H, Yu F
Efficacy of balloon Eustachian tuboplasty plus tympanostomy tube insertion in postirradiation otitis media with effusion.
Am J Otolaryngol: 2024 Apr 16, 45(4);104301
[PubMed:38688091] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kaplan K, Mendenhall E
Framing Long Covid through Patient activism in the United States: Patient, Provider, Academic, and Policymaker Views.
Soc Sci Med: 2024 Apr 17, 350;116901
[PubMed:38688088] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lytvynenko A, Baluchová S, Zima J, Krůšek J, Schwarzová-Pecková K
Biofouling and performance of boron-doped diamond electrodes for detection of dopamine and serotonin in neuron cultivation media.
Bioelectrochemistry: 2024 Apr 21, 158;108713
[PubMed:38688079] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Casalini T, Treacher K, Grant I, Marucci M
In Vitro Release from Polymeric Core/Shell Nanoparticles through the Lens of Multiscale Modeling.
Mol Pharm: 2024 Apr 30;
[PubMed:38687999] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bhattacharyya A, Das A, Guchhait N
Investigating the Photophysical Aspects of a Naphthalene-Based Excited-State Proton Transfer Dye 1-(1H-Benzo[d]imidazol-2-yl)naphthalen-2-ol: pH-Dependent Modulation of Photodynamics.
J Phys Chem A: 2024 Apr 30;
[PubMed:38687998] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Innominato PF, Macdonald JH, Saxton W, Longshaw L, Granger R, Naja I, Allocca C, Edwards R, Rasheed S, Folkvord F, de Batlle J, Ail R, Motta E, Bale C, Fuller C, Mullard AP, Subbe CP, Griffiths D, Wreglesworth NI, Pecchia L, Fico G, Antonini A
Digital Remote Monitoring Using an mHealth Solution for Survivors of Cancer: Protocol for a Pilot Observational Study.
JMIR Res Protoc: 2024 Apr 30, 13;e52957
[PubMed:38687985] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Zhao J, Wang Z, Yang M, Guo J, Gao Z, Song P, Song YY
Pore-Forming Toxin-Driven Recovery of Peroxidase-Mimicking Activity in Biomass Channels for Label-Free Electrochemical Bacteria Sensing.
Anal Chem: 2024 Apr 30;
[PubMed:38687969] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Matsoso JB, Antonatos N, Dekanovský L, Lontio Fomekong R, Elliot JD, Gianolio D, Mazánek V, Journet C, Sofer Z
Enhancing Nitrogen Reduction Reaction through Formation of 2D/2D Hybrid Heterostructures of MoS(2)@rGO.
ACS Appl Mater Interfaces: 2024 Apr 30;
[PubMed:38687904] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nyirandamutsa F, Niyonsenga J, Lisette GK, Izabayo J, Kambibi E, Munderere S, Sebuhoro C, Muhayisa A, Vincent S
The mental health prognosis of offspring born of genocidal rape is influenced by family members, the community and their perceptions toward them.
PLoS One: 2024, 19(4);e0302330
[PubMed:38687773] [WorldCat.org: ISSN ESSN ] [DOI] ( )

O'Brien A, Hayton A, Cutler K, Adler A, Shaw DJ, Clarke J, Watt N, Harkiss GD
Diagnostic accuracy of the Enferplex Bovine TB antibody test using individual milk samples from cattle.
PLoS One: 2024, 19(4);e0301609
[PubMed:38687765] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Muni I, Behera HS, Sahu SK, Priyadarshini SR, Das S
Microbiological Profile of Culture-Positive Fungal Keratitis.
Eye Contact Lens: 2024 Apr 30;
[PubMed:38687618] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gaysynsky A, Senft Everson N, Heley K, Chou WS
Perceptions of Health Misinformation on Social Media: Cross-Sectional Survey Study.
JMIR Infodemiology: 2024 Apr 30, 4;e51127
[PubMed:38687591] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Anikamadu O, Ezechi O, Engelhart A, Nwaozuru U, Obiezu-Umeh C, Ogunjemite P, Bale BI, Nwachukwu D, Gbaja-Biamila T, Oladele D, Musa AZ, Mason S, Ojo T, Tucker J, Iwelunmor J
Expanding Youth-Friendly HIV Self-Testing Services During the COVID-19 Pandemic: Qualitative Analysis of a Crowdsourcing Open Call in Nigeria.
JMIR Form Res: 2024 Apr 30, 8;e46945
[PubMed:38687582] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Feng X, Ye W, Liu X, Lu Y, Gao M, Lai R, Chen Y
First Report of Kiwifruit Root Rot Caused by Globisporangium spinosum in China.
Plant Dis: 2024 Apr 30;
[PubMed:38687573] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Onur E, Lee J, Aymerich-Armengol R, Lim J, Dai Y, Tüysüz H, Scheu C, Weidenthaler C
Exploring the Effects of the Photochromic Response and Crystallization on the Local Structure of Noncrystalline Niobium Oxide.
ACS Appl Mater Interfaces: 2024 Apr 30;
[PubMed:38687307] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sheikh IS, Katyal R, Hadjinicolaou A, Bibby BM, Olandoski M, Nascimento FA, Beniczky S
The online educational tool "Roadmap to EEGs" significantly improved trainee performance in recognizing EEG patterns.
Epileptic Disord: 2024 Apr 30;
[PubMed:38687239] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Berg WA, Berg JM, Bandos AI, Vargo A, Chough DM, Lu AH, Ganott MA, Kelly AE, Nair BE, Hartman JY, Waheed U, Hakim CM, Harnist KS, Reginella RF, Shinde DD, Carlin BA, Cohen CS, Wallace LP, Sumkin JH, Zuley ML
Addition of Contrast-enhanced Mammography to Tomosynthesis for Breast Cancer Detection in Women with a Personal History of Breast Cancer: Prospective TOCEM Trial Interim Analysis.
Radiology: 2024 Apr, 311(1);e231991
[PubMed:38687218] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Itatani M, Onishi Y, Suematsu NJ, Lagzi I
Periodic Precipitation in a Confined Liquid Layer.
J Phys Chem Lett: 2024 Apr 30;4948-4957
[PubMed:38687169] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hundt M, Chen A, Donovan J, Kim N, Yilma M, Tana M, Mehta N, Zhou K
Barriers to liver transplant referral in safety net settings: A national provider survey.
Liver Transpl: 2024 May 1;
[PubMed:38687168] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

MacGillivray I, Skvortsov A
Acoustic radiation from multilayered materials using the reciprocity principle.
J Acoust Soc Am: 2024 Apr 1, 155(4);2891-2902
[PubMed:38687145] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ardissone A, Leonowicz-Bukała I, Struck-Peregończyk M
"Can Anyone Tell Me…". Online Health Communities in Diabetes Self-Management in Poland and Italy.
Health Commun: 2024 Apr 30;1-8
[PubMed:38687112] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Alberoni C, Pavan G, Scattolin T, Aliprandi A
Critical Aspects and Challenges in the Design of Small Molecules for Electrochemiluminescence (ECL) Application.
Chempluschem: 2024 Apr 30;e202400142
[PubMed:38687095] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Mao R, Yu J, Deng B, Dai X, Du Y, Du S, Zhang W, Rao Y
Conditional chemoconnectomics (cCCTomics) as a strategy for efficient and conditional targeting of chemical transmission.
Elife: 2024 Apr 30, 12;
[PubMed:38686992] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kim Y
Stent-assisted coil embolization of large coronary artery aneurysm under intravascular ultrasound guidance.
Cardiol J: 2024, 31(2);359-360
[PubMed:38686988] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Klaudel J, Trenkner W, Pawłowski K, Radowski P, Surman D, Ziniewicz B, Smolarczyk M, Kossakowska-Jemioło U, Krasowski W
Large-bore SOFIA catheter for bailout thrombus aspiration in STEMI.
Cardiol J: 2024, 31(2);352-354
[PubMed:38686985] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

O'Donnell NH, Erlichman S, Nickerson CG
Health Motivation in the Influencer Era: Analyzing Entertainment, Personal, and Social Media Role Models.
Health Commun: 2024 Apr 30;1-12
[PubMed:38686947] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chappell TC, Maiello KG, Tierney AJ, Yanagi K, Lee JA, Lee K, Mace CR, Bennett CS, Nair NU
Rapid spectrophotometric detection for optimized production of landomycins and characterization of their therapeutic potential.
Biotechnol Bioeng: 2024 Apr 30;
[PubMed:38686918] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Rangkadilok N, Pholphana N, Akanimanee J, Panomvana D, Puranajoti P, Songvut P, Satayavivad J
Comparison of diterpenoid contents and dissolution profiles of selected Andrographis paniculata crude and extract capsules.
Phytochem Anal: 2024 Apr 30;
[PubMed:38686639] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Döring N, Mohseni MR, Pietras L, Dekker A, Briken P
Research in brief: How prevalent is rough sex? Results from a national online sample of adults in Germany.
Perspect Sex Reprod Health: 2024 Apr 30;
[PubMed:38686462] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lin X, Sun W, Lin M, Chen T, Duan K, Lin H, Zhang C, Qi H
Bicomponent core/sheath melt-blown fibers for air filtration with ultra-low resistance.
RSC Adv: 2024 Apr 25, 14(20);14100-14113
[PubMed:38686297] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Takano M, Taka F, Ogiue C, Nagata N
Online harassment of Japanese celebrities and influencers.
Front Psychol: 2024, 15;1386146
[PubMed:38686089] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Gu X
Enhancing social media engagement using AI-modified background music: examining the roles of event relevance, lyric resonance, AI-singer origins, audience interpretation, emotional resonance, and social media engagement.
Front Psychol: 2024, 15;1267516
[PubMed:38686081] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Song X, Han D, Zhang J, Fan J, Ning P, Peng Y
Study on the impact of COVID-19 pandemic on the mental health of Chinese college students: a cross-sectional analysis.
Front Public Health: 2024, 12;1340642
[PubMed:38686032] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Khan S, McWhorter AR, Andrews DM, Underwood GJ, Moore RJ, Van TTH, Gast RK, Chousalkar KK
A live attenuated Salmonella Typhimurium vaccine dose and diluent have minimal effects on the caecal microbiota of layer chickens.
Front Vet Sci: 2024, 11;1364731
[PubMed:38686027] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Witzel TC, Ghobrial A, Palich R, Charles H, Rodger AJ, Sabin C, Sparrowhawk A, Pool ERM, Prochazka M, Vivancos R, Sinka K, Folkard K, Burns FM, Saunders J
Experiences of mpox illness and case management among cis and trans gay, bisexual and other men who have sex with men in England: a qualitative study.
EClinicalMedicine: 2024 Apr, 70;102522
[PubMed:38685928] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Collier-Sewell F, Monteux S
What is the purpose of nurse education (and what should it be)?
Nurs Inq: 2024 Apr 29;e12640
[PubMed:38685718] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hung P, Miciak M, Godziuk K, Gross DP, Forhan M
Reducing weight bias and stigma in qualitative research interviews: Considerations for researchers.
Obes Rev: 2024 Apr 29;e13750
[PubMed:38685680] [WorldCat.org: ISSN ESSN ] [DOI] ( a)


Expression of Concern: Hydrophobic ammonium based ionic liquids for efficient extraction of textile dyes from aqueous media: Extraction study and antibacterial evaluation.
Chemosphere: 2024 May, 356;142015
[PubMed:38685655] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Du X, Zhou L, Li Y, Zhang F, Wang L, Yao J, Chen X, Liu S, Cao Y
Effects of yak rumen anaerobic fungus Orpinomyces sp. YF3 fermented on in vitro wheat straw fermentation and microbial communities in dairy goat rumen fluid, with and without fungal flora.
J Anim Physiol Anim Nutr (Berl): 2024 Apr 29;
[PubMed:38685575] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hauc SC, Mehrzad R, Rivera JC, Hanrahan GB, de Baun HM, Cruz CA, Woo AS
Assessing the Reliability of Facial Feminization Content on Social Media and Its Impact on the Dissemination of Misinformation.
Ann Plast Surg: 2024 May 1, 92(5);580-584
[PubMed:38685497] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Tarlao C, Leclerc F, Brochu J, Guastavino C
Current approaches to planning (with) sound.
Sci Total Environ: 2024 Apr 27;172826
[PubMed:38685418] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Inkster T, Caldwell I, Aird H, Willis C, Lai S, Mallon J
Development and Evaluation of Test Methods for the Detection and Enumeration of Opportunistic Waterborne Pathogens from the Hospital Environment.
J Hosp Infect: 2024 Apr 27;
[PubMed:38685413] [WorldCat.org: ISSN ESSN ] [DOI] ( a)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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