User:Tim

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Tim Hohm, Postdoc

Tim Hohm is a postdoc at the Computational Biology Group in the Department of Medical Genetics at the University of Lausanne. He received his PhD from ETH Zurich in 2009, developing techniques for parameter estimation on gene regulative networks for multi-cell systems. He is now involved in the Plant Growth project from SystemsX.ch, investigating gene regulative networks responsible for phototropism in Arabidopsis thaliana.


Contents

Contact Details

  • address: Rue du Bugnon 27 - BU 01 116 - CH-1005 Lausanne - Switzerland
  • email: tim.hohm at unil.ch
  • phone: +41 - 21 - 692 - 53 78

Publications

2013

  1. Preuten T, Hohm T, Bergmann S, and Fankhauser C. Defining the site of light perception and initiation of phototropism in Arabidopsis. Curr Biol 2013 Oct 7; 23(19) 1934-8. doi:10.1016/j.cub.2013.07.079 pmid:24076239. PubMed HubMed [phbf2013]
  2. Hohm T, Preuten T, and Fankhauser C. Phototropism: translating light into directional growth. Am J Bot 2013 Jan; 100(1) 47-59. doi:10.3732/ajb.1200299 pmid:23152332. PubMed HubMed [hpf2012]
All Medline abstracts: PubMed HubMed

2010

  1. Hohm T, Zitzler E, and Simon R. A dynamic model for stem cell homeostasis and patterning in Arabidopsis meristems. PLoS One 2010 Feb 12; 5(2) e9189. doi:10.1371/journal.pone.0009189 pmid:20169148. PubMed HubMed [hzs2010a]
  2. Woehrle M, Brockhoff D, Hohm T, and Bleuler S. Investigating Coverage and Connectivity Trade-offs in Wireless Sensor Networks: The Benefits of MOEAs. In Ehrgott M et al., editors, Multiple Criteria Decision Making for Sustainable Energy and Transportation Systems (MCDM 2008), volume 634 of LNEMS, pages 211–221, Heidelberg, Germany, 2010. Springer. doi

    [wbhb2010a]

  3. Brockhoff D, Auger A, Arnold DV, and Hohm T. Mirrored Sampling and Sequential Selection for Evolution Strategies . In Schaefer R et al., editors, Parallel Problem Solving from Nature (PPSN XI), volume 6238 of LNCS, pages 11–21, Heidelberg, Germany, 2010. Springer. doi

    [baha2010a]

  4. Hohm T and Zitzler E. A hierarchical approach to model parameter optimization for developmental systems. Biosystems 2010 Nov-Dec; 102(2-3) 157-67. doi:10.1016/j.biosystems.2010.09.002 pmid:20851739. PubMed HubMed [hz2010a]
All Medline abstracts: PubMed HubMed

2009

  1. Hohm T and Zitzler E. A Multiobjective Evolutionary Algorithm for Numerical Parameter Space Characterization of Reaction Diffusion Systems. In Kadirkamanathan V et al., editors, International Conference on Pattern Recognition in Bioinformatics (PRIB 2009), volume 5780 of LNBI, pages 162–174, Heidelberg, Germany, 2009. Springer. doi [hz2009b]
  2. Hohm T and Zitzler E. Multicellular pattern formation: parameter estimation for ordinary differential equation-based gene regulatory network models. IEEE Eng Med Biol Mag 2009 Jul-Aug; 28(4) 52-7. doi:10.1109/MEMB.2009.932905 pmid:19622425. PubMed HubMed [hz2009c]
  3. Hohm T and Zitzler E. Multiobjectivization for parameter estimation: a case-study on the segment polarity network of drosophila. In Rothlauf F et al., editors, GECCO '09: Genetic and Evolutionary Computation Conference (GECCO 2009), pages 209–216, New York, NY, USA, 2009. ACM. doi

    [hz2009a]

2008

  1. Hohm T, Egli M, Gaehwiler S, Bleuler S, Feller J, Frick D, Huber R, Karlsson M, Lingenhag R, Ruetimann T, Sasse T, Steiner T, Stocker J, and Zitzler E. An Evolutionary Algorithm for the Block Stacking Problem. In Monmarché N et al., editors, Evolution Artificielle 2007, volume 4926 of LNCS, pages 111–122, Berlin, Germany, 2008. Springer. doi [hegb2008a]
  2. Gronwald W, Hohm T, and Hoffmann D. Evolutionary Pareto-optimization of stably folding peptides. BMC Bioinformatics 2008 Feb 19; 9 109. doi:10.1186/1471-2105-9-109 pmid:18284690. PubMed HubMed [ghh2008a]

2007

  1. Hohm T and Zitzler E. Modeling the Shoot Apical Meristem in A. thaliana: Parameter Estimation for Spatial Pattern Formation. In Marchiori E et al., editors, Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (evoBIO 2007), volume 4447 of LNCS, pages 102–113. Springer, 2007. doi [hz2007a]

2006

  1. Hohm T, Limbourg P, and Hoffmann D. A multiobjective evolutionary method for the design of peptidic mimotopes. J Comput Biol 2006 Jan-Feb; 13(1) 113-25. doi:10.1089/cmb.2006.13.113 pmid:16472025. PubMed HubMed [hlh2006a]

2005

  1. Hohm T and Hoffmann D. A multi-objective evolutionary approach to peptide structure redesign and stabilization. In Beyer H-G and O'Reilly U-M, editors, Genetic and Evolutionary Computation Conference (GECCO 2005), pages 423–429, New York, NY, USA, 2005. ACM Press. doi [hh2005a]