Under-expression is coded with green,
over-expression with red color.
intracellular
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
cytoskeleton
Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
organelle
Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
intracellular non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
intermediate filament cytoskeleton
Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell.
neurofilament cytoskeleton
Intermediate filament cytoskeletal structure that is made up of neurofilaments. Neurofilaments are specialized intermediate filaments found in neurons.
all
This term is the most general term possible
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
intracellular non-membrane-bounded organelle
Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.
intracellular part
Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
intracellular organelle
Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
ABLIM1actin binding LIM protein 1 (200965_s_at), score: 0.74 ADAMTS3ADAM metallopeptidase with thrombospondin type 1 motif, 3 (214913_at), score: 0.71 ALDH1A1aldehyde dehydrogenase 1 family, member A1 (212224_at), score: 0.86 ARL15ADP-ribosylation factor-like 15 (219842_at), score: 0.8 C14orf169chromosome 14 open reading frame 169 (219526_at), score: 0.69 CAND2cullin-associated and neddylation-dissociated 2 (putative) (213547_at), score: 0.72 COBLL1COBL-like 1 (203642_s_at), score: 0.8 DAPK1death-associated protein kinase 1 (203139_at), score: 0.7 ENOSF1enolase superfamily member 1 (204142_at), score: 0.71 FAM174Bfamily with sequence similarity 174, member B (51158_at), score: 1 FAM46Cfamily with sequence similarity 46, member C (220306_at), score: 0.9 FAM65Bfamily with sequence similarity 65, member B (209829_at), score: 0.83 FLT1fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) (222033_s_at), score: 0.78 GAL3ST4galactose-3-O-sulfotransferase 4 (219815_at), score: 0.74 GALNT3UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) (203397_s_at), score: 0.85 GFRA1GDNF family receptor alpha 1 (205696_s_at), score: 0.83 GPR126G protein-coupled receptor 126 (213094_at), score: 0.77 GREM1gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis) (218469_at), score: 0.82 IL23Ainterleukin 23, alpha subunit p19 (211796_s_at), score: 0.89 INAinternexin neuronal intermediate filament protein, alpha (204465_s_at), score: 0.71 ISL1ISL LIM homeobox 1 (206104_at), score: 0.72 KCNJ2potassium inwardly-rectifying channel, subfamily J, member 2 (206765_at), score: 0.75 KCNN2potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 (220116_at), score: 0.7 KYNUkynureninase (L-kynurenine hydrolase) (217388_s_at), score: -0.73 L1CAML1 cell adhesion molecule (204584_at), score: 0.79 LMO7LIM domain 7 (202674_s_at), score: 0.72 LPPR4plasticity related gene 1 (213496_at), score: 0.76 LRRC1leucine rich repeat containing 1 (218816_at), score: 0.73 LRRC16Aleucine rich repeat containing 16A (219573_at), score: 0.68 MANSC1MANSC domain containing 1 (220945_x_at), score: 0.81 ME1malic enzyme 1, NADP(+)-dependent, cytosolic (204058_at), score: 0.68 MLLT3myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (204918_s_at), score: 0.77 MRPS18Cmitochondrial ribosomal protein S18C (220103_s_at), score: 0.7 NBEAneurobeachin (221207_s_at), score: 0.69 NESnestin (218678_at), score: 0.7 NLGN1neuroligin 1 (205893_at), score: 0.67 PBXIP1pre-B-cell leukemia homeobox interacting protein 1 (214176_s_at), score: 0.68 PLCB1phospholipase C, beta 1 (phosphoinositide-specific) (213222_at), score: 0.68 PSTPIP2proline-serine-threonine phosphatase interacting protein 2 (219938_s_at), score: 0.68 RPS4P17ribosomal protein S4X pseudogene 17 (216342_x_at), score: -0.67 SERPINB9serpin peptidase inhibitor, clade B (ovalbumin), member 9 (209723_at), score: 0.82 SLC38A4solute carrier family 38, member 4 (220786_s_at), score: 0.91 SLC3A1solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1 (205799_s_at), score: 0.71 SYNGR1synaptogyrin 1 (210613_s_at), score: 0.71 SYNMsynemin, intermediate filament protein (212730_at), score: 0.7 SYT11synaptotagmin XI (209198_s_at), score: 0.68 TBXA2Rthromboxane A2 receptor (336_at), score: 0.9 TMEM2transmembrane protein 2 (218113_at), score: 0.71 VGLL3vestigial like 3 (Drosophila) (220327_at), score: 0.69 ZNF215zinc finger protein 215 (220214_at), score: 0.71
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-4219-raw-cel-1311956358.cel | 10 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| E-GEOD-4219-raw-cel-1311956824.cel | 24 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
| E-GEOD-4219-raw-cel-1311956178.cel | 6 | 7 | Sph-mono | hgu133plus2 | none | Sph-mon 1 |
