Under-expression is coded with green,
over-expression with red color.
immune system process
Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cell proliferation
The multiplication or reproduction of cells, resulting in the expansion of a cell population.
positive regulation of cell proliferation
Any process that activates or increases the rate or extent of cell proliferation.
cellular process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
antigen processing and presentation
The process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
regulation of cell proliferation
Any process that modulates the frequency, rate or extent of cell proliferation.
antigen processing and presentation of peptide antigen
The process by which an antigen-presenting cell expresses peptide antigen in association with an MHC protein complex on its cell surface, including proteolysis and transport steps for the peptide antigen both prior to and following assembly with the MHC protein complex. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein.
positive regulation of biological process
Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
positive regulation of cellular process
Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
regulation of biological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
regulation of cellular process
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
biological regulation
Any process that modulates the frequency, rate or extent of any biological process, quality or function.
all
This term is the most general term possible
positive regulation of cellular process
Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
positive regulation of biological process
Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
regulation of cellular process
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
regulation of biological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
positive regulation of cell proliferation
Any process that activates or increases the rate or extent of cell proliferation.
regulation of cell proliferation
Any process that modulates the frequency, rate or extent of cell proliferation.
positive regulation of cellular process
Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
positive regulation of cell proliferation
Any process that activates or increases the rate or extent of cell proliferation.
membrane
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
integral to membrane
Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.
extracellular region
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
cellular_component
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
intrinsic to membrane
Located in a membrane such that some covalently attached portion of the gene product, for example part of a peptide sequence or some other covalently attached moiety such as a GPI anchor, spans or is embedded in one or both leaflets of the membrane.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
all
This term is the most general term possible
cell part
Any constituent part of a cell, the basic structural and functional unit of all organisms.
membrane part
Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
| Id | Pvalue | ExpCount | Count | Size | Term |
|---|---|---|---|---|---|
| 00053 | 3.742e-02 | 0.1849 | 3 | 8 | Ascorbate and aldarate metabolism |
| 00340 | 4.457e-02 | 0.4391 | 4 | 19 | Histidine metabolism |
| 00641 | 4.867e-02 | 0.208 | 3 | 9 | 3-Chloroacrylic acid degradation |
ABCC9ATP-binding cassette, sub-family C (CFTR/MRP), member 9 (208561_at), score: -0.63 ABHD14Aabhydrolase domain containing 14A (210006_at), score: 0.71 ADCY9adenylate cyclase 9 (204497_at), score: 0.64 ADRA2Aadrenergic, alpha-2A-, receptor (209869_at), score: 0.57 AGBL5ATP/GTP binding protein-like 5 (218480_at), score: 0.7 AKAP6A kinase (PRKA) anchor protein 6 (205359_at), score: 0.75 ALDH1A3aldehyde dehydrogenase 1 family, member A3 (203180_at), score: -0.65 ALDH1B1aldehyde dehydrogenase 1 family, member B1 (209646_x_at), score: 0.65 ALDH3B1aldehyde dehydrogenase 3 family, member B1 (211004_s_at), score: 0.56 ALDH6A1aldehyde dehydrogenase 6 family, member A1 (221589_s_at), score: 0.6 ALDH9A1aldehyde dehydrogenase 9 family, member A1 (201612_at), score: 0.6 ANKRD28ankyrin repeat domain 28 (213035_at), score: 0.56 ARHGEF6Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 (209539_at), score: 0.63 ASPNasporin (219087_at), score: 0.63 ATF4activating transcription factor 4 (tax-responsive enhancer element B67) (200779_at), score: -0.63 ATP2A2ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 (212361_s_at), score: 0.6 B3GNT1UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 (203188_at), score: 0.69 BAG1BCL2-associated athanogene (211475_s_at), score: -0.78 BAZ1Bbromodomain adjacent to zinc finger domain, 1B (208445_s_at), score: -0.69 BST1bone marrow stromal cell antigen 1 (205715_at), score: 0.57 BTN3A1butyrophilin, subfamily 3, member A1 (209770_at), score: 0.65 BTN3A2butyrophilin, subfamily 3, member A2 (209846_s_at), score: 0.65 C10orf116chromosome 10 open reading frame 116 (203571_s_at), score: 0.69 C10orf57chromosome 10 open reading frame 57 (218174_s_at), score: 0.68 C10orf72chromosome 10 open reading frame 72 (213381_at), score: 0.62 C1orf115chromosome 1 open reading frame 115 (218546_at), score: -0.65 C2orf68chromosome 2 open reading frame 68 (221878_at), score: 0.6 C4orf18chromosome 4 open reading frame 18 (219872_at), score: 0.62 C4orf30chromosome 4 open reading frame 30 (219717_at), score: 0.6 C4orf31chromosome 4 open reading frame 31 (219747_at), score: 0.73 C5orf23chromosome 5 open reading frame 23 (219054_at), score: 0.55 C6orf35chromosome 6 open reading frame 35 (218453_s_at), score: 0.55 C7orf58chromosome 7 open reading frame 58 (220032_at), score: 0.68 C9orf125chromosome 9 open reading frame 125 (213386_at), score: 0.58 C9orf127chromosome 9 open reading frame 127 (207839_s_at), score: 1 CCNG1cyclin G1 (208796_s_at), score: 0.73 CD81CD81 molecule (200675_at), score: 0.56 CDC14BCDC14 cell division cycle 14 homolog B (S. cerevisiae) (208022_s_at), score: 0.69 CDH8cadherin 8, type 2 (217574_at), score: 0.71 CEBPGCCAAT/enhancer binding protein (C/EBP), gamma (204203_at), score: -0.71 CHAC1ChaC, cation transport regulator homolog 1 (E. coli) (219270_at), score: -0.64 CHST5carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 (219182_at), score: 0.56 CHST7carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 (206756_at), score: 0.62 CLEC11AC-type lectin domain family 11, member A (211709_s_at), score: 0.58 COL11A1collagen, type XI, alpha 1 (37892_at), score: 0.58 COL8A2collagen, type VIII, alpha 2 (221900_at), score: 0.59 CRELD1cysteine-rich with EGF-like domains 1 (203368_at), score: 0.64 CRYBB2crystallin, beta B2 (206777_s_at), score: -0.64 CRYL1crystallin, lambda 1 (220753_s_at), score: 0.83 CTSOcathepsin O (203758_at), score: 0.74 CYP26B1cytochrome P450, family 26, subfamily B, polypeptide 1 (219825_at), score: -0.79 DBC1deleted in bladder cancer 1 (205818_at), score: -0.73 DDIT3DNA-damage-inducible transcript 3 (209383_at), score: -0.76 DDIT4DNA-damage-inducible transcript 4 (202887_s_at), score: -0.68 DHRS1dehydrogenase/reductase (SDR family) member 1 (213279_at), score: 0.58 DIAPH2diaphanous homolog 2 (Drosophila) (205603_s_at), score: 0.69 DIO2deiodinase, iodothyronine, type II (203699_s_at), score: -0.78 DIS3DIS3 mitotic control homolog (S. cerevisiae) (218362_s_at), score: 0.57 DKK3dickkopf homolog 3 (Xenopus laevis) (202196_s_at), score: 0.59 DNAJC4DnaJ (Hsp40) homolog, subfamily C, member 4 (206782_s_at), score: 0.71 ECM1extracellular matrix protein 1 (209365_s_at), score: 0.6 EGFL6EGF-like-domain, multiple 6 (219454_at), score: -0.75 EIF4Heukaryotic translation initiation factor 4H (206621_s_at), score: -0.7 EIF5eukaryotic translation initiation factor 5 (208290_s_at), score: -0.72 ENDOD1endonuclease domain containing 1 (212573_at), score: 0.74 ENPP1ectonucleotide pyrophosphatase/phosphodiesterase 1 (205066_s_at), score: 0.57 ERAP1endoplasmic reticulum aminopeptidase 1 (214012_at), score: 0.59 F10coagulation factor X (205620_at), score: 0.69 FAM8A1family with sequence similarity 8, member A1 (203420_at), score: 0.59 FCHSD2FCH and double SH3 domains 2 (203620_s_at), score: 0.71 FDXRferredoxin reductase (207813_s_at), score: 0.57 FGD6FYVE, RhoGEF and PH domain containing 6 (219901_at), score: 0.56 FGF9fibroblast growth factor 9 (glia-activating factor) (206404_at), score: -0.69 FIG4FIG4 homolog (S. cerevisiae) (203656_at), score: 0.6 FKBPLFK506 binding protein like (219187_at), score: -0.73 GAAglucosidase, alpha; acid (202812_at), score: 0.58 GAS6growth arrest-specific 6 (202177_at), score: 0.66 GDPD5glycerophosphodiester phosphodiesterase domain containing 5 (32502_at), score: 0.79 GFRA1GDNF family receptor alpha 1 (205696_s_at), score: 0.65 GLRBglycine receptor, beta (205280_at), score: 0.69 GLT25D2glycosyltransferase 25 domain containing 2 (209883_at), score: 0.68 GOLSYNGolgi-localized protein (218692_at), score: -0.81 GOT1glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) (208813_at), score: -0.64 GPR124G protein-coupled receptor 124 (221814_at), score: 0.57 GSNgelsolin (amyloidosis, Finnish type) (200696_s_at), score: 0.61 GSTT2glutathione S-transferase theta 2 (205439_at), score: 0.64 GTF2A1Lgeneral transcription factor IIA, 1-like (213413_at), score: 0.63 GTPBP2GTP binding protein 2 (221050_s_at), score: -0.71 HAPLN1hyaluronan and proteoglycan link protein 1 (205523_at), score: 0.57 HLA-DMAmajor histocompatibility complex, class II, DM alpha (217478_s_at), score: 0.62 HLA-Emajor histocompatibility complex, class I, E (200904_at), score: 0.72 HNRNPMheterogeneous nuclear ribonucleoprotein M (200072_s_at), score: -0.67 HRASv-Ha-ras Harvey rat sarcoma viral oncogene homolog (212983_at), score: -0.74 HSPB3heat shock 27kDa protein 3 (206375_s_at), score: 0.8 ID1inhibitor of DNA binding 1, dominant negative helix-loop-helix protein (208937_s_at), score: -0.65 IER3immediate early response 3 (201631_s_at), score: -0.64 IFFO1intermediate filament family orphan 1 (36030_at), score: 0.59 IGBP1immunoglobulin (CD79A) binding protein 1 (202105_at), score: 0.55 IGF2BP3insulin-like growth factor 2 mRNA binding protein 3 (203819_s_at), score: -0.7 IL27RAinterleukin 27 receptor, alpha (205926_at), score: 0.96 IL6Rinterleukin 6 receptor (205945_at), score: 0.65 ILKAPintegrin-linked kinase-associated serine/threonine phosphatase 2C (221548_s_at), score: -0.65 IMP3IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) (221688_s_at), score: -0.65 ITIH5inter-alpha (globulin) inhibitor H5 (219064_at), score: -0.73 ITM2Bintegral membrane protein 2B (217732_s_at), score: 0.76 KAT2BK(lysine) acetyltransferase 2B (203845_at), score: 0.63 KCTD15potassium channel tetramerisation domain containing 15 (218553_s_at), score: -0.64 KITv-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog (205051_s_at), score: 0.58 KLF5Kruppel-like factor 5 (intestinal) (209212_s_at), score: 0.79 LEPRleptin receptor (209894_at), score: 0.72 LEPREL2leprecan-like 2 (204854_at), score: 0.77 LHFPlipoma HMGIC fusion partner (218656_s_at), score: 0.75 LHPPphospholysine phosphohistidine inorganic pyrophosphate phosphatase (218523_at), score: 0.65 LMF1lipase maturation factor 1 (219135_s_at), score: 0.77 LMOD1leiomodin 1 (smooth muscle) (203766_s_at), score: 0.76 MAPK8IP3mitogen-activated protein kinase 8 interacting protein 3 (213178_s_at), score: 0.64 MATN2matrilin 2 (202350_s_at), score: 0.69 MEGF9multiple EGF-like-domains 9 (212830_at), score: 0.61 MR1major histocompatibility complex, class I-related (207565_s_at), score: 0.9 MYCv-myc myelocytomatosis viral oncogene homolog (avian) (202431_s_at), score: -0.65 N4BP2L1NEDD4 binding protein 2-like 1 (213375_s_at), score: 0.76 NLGN1neuroligin 1 (205893_at), score: 0.56 NME3non-metastatic cells 3, protein expressed in (204862_s_at), score: 0.89 NOL12nucleolar protein 12 (219324_at), score: -0.63 NPR3natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) (219789_at), score: 0.6 NRCAMneuronal cell adhesion molecule (204105_s_at), score: -0.83 OCEL1occludin/ELL domain containing 1 (205441_at), score: 0.62 P2RY5purinergic receptor P2Y, G-protein coupled, 5 (218589_at), score: 0.72 PAPOLGpoly(A) polymerase gamma (222273_at), score: 0.62 PAPPA2pappalysin 2 (213332_at), score: -0.71 PCYOX1Lprenylcysteine oxidase 1 like (218953_s_at), score: 0.67 PDGFCplatelet derived growth factor C (218718_at), score: 0.76 PEX6peroxisomal biogenesis factor 6 (204545_at), score: 0.59 PHLPPPH domain and leucine rich repeat protein phosphatase (212719_at), score: 0.6 POMT1protein-O-mannosyltransferase 1 (218476_at), score: 0.61 PPANpeter pan homolog (Drosophila) (221649_s_at), score: -0.76 PPCDCphosphopantothenoylcysteine decarboxylase (219066_at), score: -0.68 PPP2R2Dprotein phosphatase 2, regulatory subunit B, delta isoform (221772_s_at), score: -0.68 PRELPproline/arginine-rich end leucine-rich repeat protein (204223_at), score: 0.65 PSAT1phosphoserine aminotransferase 1 (220892_s_at), score: -0.63 PTERphosphotriesterase related (218967_s_at), score: -0.63 PYCARDPYD and CARD domain containing (221666_s_at), score: 0.56 QPCTglutaminyl-peptide cyclotransferase (205174_s_at), score: 0.77 R3HDM2R3H domain containing 2 (203831_at), score: 0.58 RAGErenal tumor antigen (205130_at), score: 0.75 RCBTB2regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 (204759_at), score: 0.74 RFC2replication factor C (activator 1) 2, 40kDa (203696_s_at), score: -0.63 RFNGRFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase (212968_at), score: 0.57 RHOQras homolog gene family, member Q (212119_at), score: 0.56 SAMD14sterile alpha motif domain containing 14 (213866_at), score: 0.68 SCG5secretogranin V (7B2 protein) (203889_at), score: 0.65 SIDT2SID1 transmembrane family, member 2 (56256_at), score: 0.7 SIPA1L1signal-induced proliferation-associated 1 like 1 (202255_s_at), score: 0.55 SLC3A2solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 (200924_s_at), score: -0.63 SLC46A3solute carrier family 46, member 3 (214719_at), score: 0.95 SLC6A9solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (207043_s_at), score: -0.63 SLC9A7solute carrier family 9 (sodium/hydrogen exchanger), member 7 (214860_at), score: 0.58 SMPD1sphingomyelin phosphodiesterase 1, acid lysosomal (209420_s_at), score: 0.62 SORT1sortilin 1 (212807_s_at), score: 0.68 SPINT2serine peptidase inhibitor, Kunitz type, 2 (210715_s_at), score: 0.65 SPON1spondin 1, extracellular matrix protein (209436_at), score: -0.8 SSPNsarcospan (Kras oncogene-associated gene) (204963_at), score: 0.8 STAG1stromal antigen 1 (202293_at), score: -0.62 STARD5StAR-related lipid transfer (START) domain containing 5 (213820_s_at), score: 0.94 TAPBPTAP binding protein (tapasin) (208829_at), score: 0.6 TBC1D5TBC1 domain family, member 5 (201813_s_at), score: 0.58 TBL2transducin (beta)-like 2 (212685_s_at), score: -0.7 TCTN3tectonic family member 3 (212121_at), score: 0.64 TFRCtransferrin receptor (p90, CD71) (207332_s_at), score: -0.68 TIMP2TIMP metallopeptidase inhibitor 2 (203167_at), score: 0.61 TLE1transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) (203221_at), score: 0.75 TM4SF20transmembrane 4 L six family member 20 (220639_at), score: 0.55 TMEM159transmembrane protein 159 (213272_s_at), score: 0.57 TMEM176Btransmembrane protein 176B (220532_s_at), score: -0.78 TMEM187transmembrane protein 187 (204340_at), score: 0.69 TNFSF12tumor necrosis factor (ligand) superfamily, member 12 (205611_at), score: 0.6 TOB1transducer of ERBB2, 1 (202704_at), score: 0.56 TRA2Btransformer 2 beta homolog (Drosophila) (200892_s_at), score: -0.67 TRAPPC6Atrafficking protein particle complex 6A (204985_s_at), score: 0.67 TRMUtRNA 5-methylaminomethyl-2-thiouridylate methyltransferase (213634_s_at), score: -0.69 TUBA3Dtubulin, alpha 3d (216323_x_at), score: -0.68 UBA7ubiquitin-like modifier activating enzyme 7 (203281_s_at), score: 0.79 VAMP1vesicle-associated membrane protein 1 (synaptobrevin 1) (213326_at), score: 0.86 VCAM1vascular cell adhesion molecule 1 (203868_s_at), score: 0.64 VGLL3vestigial like 3 (Drosophila) (220327_at), score: 0.59 WFS1Wolfram syndrome 1 (wolframin) (202908_at), score: 0.58 WWC1WW and C2 domain containing 1 (213085_s_at), score: 0.58 ZFP36L1zinc finger protein 36, C3H type-like 1 (211965_at), score: 0.56 ZMAT3zinc finger, matrin type 3 (219628_at), score: 0.6 ZNF334zinc finger protein 334 (220022_at), score: -0.66 ZNF551zinc finger protein 551 (211721_s_at), score: -0.73
| Id | sample | Experiment | ExpName | Array | Syndrome | Cell.line |
|---|---|---|---|---|---|---|
| E-GEOD-3407-raw-cel-1437949750.cel | 6 | 4 | Cockayne | hgu133a | CS | CSB |
| E-GEOD-3407-raw-cel-1437949579.cel | 2 | 4 | Cockayne | hgu133a | none | CSB |
| H652_WBS.CEL | 17 | 8 | WBS | hgu133plus2 | WBS | WBS 1 |
| F348_WBS.CEL | 16 | 8 | WBS | hgu133plus2 | WBS | WBS 1 |
| F223_WBS.CEL | 15 | 8 | WBS | hgu133plus2 | WBS | WBS 1 |
