Difference between revisions of "ExpressionView"
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ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language. | ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language. | ||
| + | |||
| + | = Launch = | ||
| + | [http://maya:7575/ExpressionView Launch ExpressionView] | ||
| + | |||
| + | = Screenshots = | ||
| + | <gallery widths="400px" heights="250px" perrow="4"> | ||
| + | image:expressionview.shreenshot.1.png| | ||
| + | image:expressionview.shreenshot.2.png| | ||
| + | image:expressionview.shreenshot.3.png| | ||
| + | image:expressionview.shreenshot.4.png| | ||
| + | image:expressionview.shreenshot.5.png| | ||
| + | image:expressionview.shreenshot.6.png| | ||
| + | image:expressionview.shreenshot.7.png| | ||
| + | image:expressionview.shreenshot.8.png| | ||
| + | </gallery> | ||
| + | |||
= Download = | = Download = | ||
Revision as of 23:18, 15 November 2009
ExpressionView is an R package that provides an interactive environment to explore biclusters identified in gene expression data. A sophisticated ordering algorithm is used to present the biclusters in a visually appealing layout that provides an intuitive summary of the results. From this overview, the user can select individual biclusters and access all the biologically relevant data associated with it. The package is aimed to facilitate the collaboration between bioinformaticians and life scientists who are not familiar with the R language.
Contents
Launch
Screenshots
- Expressionview.shreenshot.1.png
- Expressionview.shreenshot.2.png
- Expressionview.shreenshot.3.png
- Expressionview.shreenshot.4.png
- Expressionview.shreenshot.5.png
- Expressionview.shreenshot.6.png
- Expressionview.shreenshot.7.png
- Expressionview.shreenshot.8.png
Download
Tutorials
There are several tutorials describing how to use ExpressionView:
R package
Flash applet
Additional documentation
- The ordering algorithm is described in more detail in pdf:Expressionview-ordering.
- The XML file structure is defined in pdf:Expressionview-xml.
