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Revision as of 10:32, 1 February 2016



An ISA transcription module


Large sets of data, like expression profile from many samples, require analytic tools to reduce their complexity. The Iterative Signature Algorithm (ISA) was designed to reduce the complexity of very large sets of data by decomposing it into so-called "modules". In the context of gene expression data these modules consist of subsets of genes that exhibit a coherent expression profile only over a subset of microarray experiments. Genes and arrays may be attributed to multiple modules and the level of required coherence can be varied resulting in different "resolutions" of the modular mapping. Since the ISA does not rely on the computation of correlation matrices (like many other tools), it is extremely fast even for very large datasets.

Software for Gene expression data

We developed the eisa GNU R package to facilitate the modular analysis of gene expression data. The package uses standard BioConductor data structures and includes various visualization tools as well.

Requirements, download and installation

To use eisa you will need a working GNU R installation.

As of the 23rd of April, 2010, the eisa package is an official BioConductor package.

eisa depends on a number of other R packages: isa2, Biobase, AnnotationDbi, Category, genefilter, DBI. The good news is that all these dependencies are installed automatically, and all you need to do is to start R and type in 

 source("http://bioconductor.org/biocLite.R")
 biocLite("eisa")

at your R prompt. See the eisa package page at the BioConductor website for details.

Alternatively, you can also download the package from here:

License

The eisa package is licensed under the GNU General Public License, version 2 or later. For details, see http://www.gnu.org/licenses/old-licenses/gpl-2.0.html.

Software for any tabular data

The ISA can be applied to identify coherent substructures (i.e. modules) from any rectangular matrix of data. You can use the isa2 R package for such an analysis.

Requirements

No additional R package is required to install and use isa2. But on Linux and Unix systems you will need a C compiler to install it. E.g. on Ubuntu Linux you will need to install the build-essential package.

Installation

The isa2 package is available from CRAN, the standard R package repository. You can install it on any platform that is supported by GNU R, e.g. Microsoft Windows, Mac OSX and Linux systems. To install it, start R and type in 

 install.packages("isa2")

at the prompt. On Linux and Unix-like systems, you will need a working C compiler for a successful installation.

License

The isa2 package is licensed under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA.

Tutorials

The Iterative Signature Algorithm for Gene Expression Data

Shows the typical steps of modular analysis, from loading you expression data to the visualization of transcription modules.
HTML PDF Rnw R code

ISA and the biclust package

The biclust package implements several biclustering algorithms. It is possible to convert the results of biclust to transcription modules and vice-versa.
HTML PDF Rnw R code

Tissue specific expression with the Iterative Signature Algorithm

HTML PDF Rnw R code

Hierarchical module trees

A module tree is the hierarchical modular organization of a data set.
HTML PDF Rnw R code

The Iterative Signature Algorithm

Tutorial for the analysis of tabular data with the isa2 R package.
HTML PDF Rnw R code

Running ISA in parallel

Shows how to run ISA on a computer cluster or multi-processor machine, using MPI and the Rmpi and snow R packages.
HTML PDF Rnw R code

ISA internals

HTML PDF Rnw R code

Matlab package

You can download it from here. It also includes the implementation of the Ping-pong algorithm Kutalik2008NB. The "testPP.m" file explains how the algorithm is applied to a pair of toy data sets. To test the ISA functionalities, the "testISA.m" needs to be launched.

Papers

Castillo-Saldarriaga C, Santos CNS, Sarria S, Ajikumar PK, Takors R
Substitute Yeast Extract While Maintaining Performance: Showcase Amorpha-4,11-Diene Production.
Microb Biotechnol: 2024 Nov, 17(11);e70056
[PubMed:39570580] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Reinhart AM
Exploring Facets of Trust and Religiosity in Organ Donation for Black and White Americans.
J Relig Health: 2024 Nov 21;
[PubMed:39570535] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gade C, von Hellfeld R, Mbadugha L, Paton G
Variable toxicity of inorganic mercury compounds to Artemia elicited by coexposure with dissolved organic matter.
Environ Sci Pollut Res Int: 2024 Nov 21;
[PubMed:39570530] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Iqbal M, Bhatti HN, Noreen S, Shukrullah S
Surface modification of heterostructured Bi(8)W(4)O(24)/ZrO(2)@GO composite via low-pressure cold plasma for boosting photocatalytic potential against Basic fuchsin and Bismarck brown Y dyes.
Environ Sci Pollut Res Int: 2024 Nov 21;
[PubMed:39570528] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Borazon EQ, Magracia MR, Ong GR, Gillott BK, Mackay S, Swinburn B, Karupaiah T
Children's exposure to unhealthy food advertising on Philippine television: content analysis of marketing strategies and temporal patterns.
Glob Health Action: 2024 Dec 31, 17(1);2427445
[PubMed:39570293] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Martins M, Stanisic D, Santos CD
Effect of microencapsulation on antioxidant activities of Eugenia punicifolia (Kunth) DC hydroethanolic extracts.
An Acad Bras Cienc: 2024, 96(4);e20240184
[PubMed:39570170] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Carroll C, Adalsteinsson JA, Prouty M, Duffin KC, Krueger GG, Walsh JA, Feng BJ
Erratum: Measuring Psoriasis Severity at Home.
J Vis Exp: 2024 Nov 21, (213);
[PubMed:39570123] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Khalaily N, Hassan A, Khream Y, Naveh-Many T, Ben-Dov IZ
The roles of mTORC1 in parathyroid gland function in chronic kidney disease-induced secondary hyperparathyroidism: Evidence from male genetic mouse models and clinical data.
FASEB J: 2024 Nov 30, 38(22);e70184
[PubMed:39570083] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ashkenazi T, Bistritz Y, Cohen J
[THE WILLINGNESS TO DONATE ORGANS IN ISRAEL 1997-2022].
Harefuah: 2023 May, 162(5);279-284
[PubMed:39569960] [WorldCat.org: ISSN ESSN ] ( p)

Dowda M, Frongillo EA, Saunders RP, McLain AC, Cordan K, Pate RR
Early life, environmental, and demographic factors associated with change in toddlers' objectively measured sedentary behaviour between 18 and 36 months of age.
J Sports Sci: 2024 Nov 21;1-7
[PubMed:39569934] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nahas G, Chen Y, Ningundi A, Tercyak S, Preciado D
Middle Ear microRNAs Drive Mucin Gene Response.
Laryngoscope: 2024 Nov 21;
[PubMed:39569770] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Liebrich M, Seeburger J, Voth V
Valve-sparing reimplantation technique to correct a neo-aortic root/autograft aneurysm after the Ross procedure.
Multimed Man Cardiothorac Surg: 2024 Nov 21, 2024;
[PubMed:39569726] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gülbağ Pınar S, Çelebi N
Development of Cyclosporine A Nanosuspension Using an Experimental Design Based on Response Surface Methodology: In Vitro Evaluations.
Turk J Pharm Sci: 2024 Nov 21, 21(5);428-439
[PubMed:39569680] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Mugada V, Jayamon B, Kosireddy BK, Palisetty BS, Pinisetti A
Prospective Drug Utilization Evaluation Analysis in Outpatient Departments with Ear, Nose, and Throat Outpatients: Incorporating Benchmarks and World Health Organization Indicators.
Turk J Pharm Sci: 2024 Nov 21, 21(5);421-427
[PubMed:39569670] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Sun R, Dupuis E, Aupiais J, Reiller PE
Study of Ca(n)UO(2)(CO(3))(3)((4-2n)-) complexes using CE-ICP-MS with polyetheretherketone (PEEK) capillaries.
Dalton Trans: 2024 Nov 21;
[PubMed:39569637] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tompson A, Alkasaby M, Choudhury T, Dun-Campbell K, Hartwell G, Körner K, Maani N, van Schalkwyk MCI, Petticrew M
Addressing the commercial determinants of mental health: an umbrella review of population-level interventions.
Health Promot Int: 2024 Dec 1, 39(6);
[PubMed:39569524] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Watts C, McGill B, Rose S, Yazidjoglou A, Chapman L, Dessaix A, Freeman B
'It'll save your lungs': early insights into nicotine pouch use and perceptions among young Australians.
Health Promot Int: 2024 Dec 1, 39(6);
[PubMed:39569488] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

McCarthy S, Pitt H, Arnot G, Pristov EJ, Thomas SL
Youth perspectives on the promotional and public relations strategies of health harming industries.
Health Promot Int: 2024 Dec 1, 39(6);
[PubMed:39569476] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Jørgensen KS, Pedersen SS, Hjorth SA, Billestrup N, Prause M
Protection of beta cells against cytokine-induced apoptosis by the gut microbial metabolite butyrate.
FEBS J: 2024 Nov 21;
[PubMed:39569473] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Gollwitzer M, Nuding S, Schramm L, Glöckner A, Gruber R, Hajek KV, Häusser JA, Imhoff R, Rudert SC
How the pandemic affected psychological research.
R Soc Open Sci: 2024 Nov, 11(11);241311
[PubMed:39569346] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Peng J
Alginate-gelatin hydrogel promotes the neurogenic differentiation potential of bone marrow CD117(+) hematopoietic stem cells.
Regen Ther: 2024 Jun, 26;1030-1036
[PubMed:39569341] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Vasylyshyn T, Patsula V, Větvička D, Shapoval O, Pankrác J, Kabešová M, Beneš J, Horák D
Intraperitoneal versus intravenous administration of Flamma®-conjugated PEG-alendronate-coated upconversion nanoparticles in a mouse pancreatic cancer model.
Nanoscale Adv: 2024 Oct 25;
[PubMed:39569328] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chakhunashvili K, Kvirkvelia E, Chakhunashvili DG
Does Screen Time Do More Damage in Boys Than Girls?
Cureus: 2024 Oct, 16(10);e72054
[PubMed:39569299] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Edris F, Almehmadi M, Alharbi NS, Alalwani AY, Alhazmi RH, Alharbi MS, Baghdadi SA, Alenezi IH, Alshaikh ABA
Knowledge, Attitudes, and Practices Regarding Preconception Care Among Women in Saudi Arabia: A Cross-Sectional Study.
Cureus: 2024 Oct, 16(10);e71982
[PubMed:39569245] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ahmad A, Alshammari AA, Aldhafeeri AM, Alharbi AL, Aldhafeeri OH, Aldhafeere TH, Aldahmashi MM, Aldhafeeri AH, Alharbi AA, Haji EM
Awareness, Knowledge, Attitudes, and Practices of Diabetic Nephropathy Among the General Population in Hafr Al Batin, Saudi Arabia: A Cross-Sectional Study.
Cureus: 2024 Oct, 16(10);e71987
[PubMed:39569233] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Stelling-Férez J, Puente-Cuadrado JM, Álvarez-Yepes V, Alcaraz S, Tristante E, Hernández-Mármol I, Mompeán-Egea I, García-Hernández AM, Nicolás FJ
Refrigerated amniotic membrane maintains its therapeutic qualities for 48 hours.
Front Bioeng Biotechnol: 2024, 12;1455397
[PubMed:39569163] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Vo QV, Hoa NT, Mechler A
The radical scavenging activity of 1-methyl-1,4-dihydronicotinamide: theoretical insights into the mechanism, kinetics and solvent effects.
RSC Adv: 2024 Nov 19, 14(50);37196-37201
[PubMed:39569110] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Li D, Sallam MH, He Z
Forming national identity with televised cultural rituals: a critical discourse analysis of China's Ancient Rhyme and New Voice-Qingming program.
Front Psychol: 2024, 15;1471431
[PubMed:39569097] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Ploke V, Batinic B, Stieger S
Evaluating flourishing: a comparative analysis of four measures using item pool visualization.
Front Psychol: 2024, 15;1458946
[PubMed:39569090] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Kumar A, Sharma A, Biswas SK
Spatial correlation-based quadratic cost function for wavefront shaping through scattering media.
J Biomed Opt: 2024 Nov, 29(11);115002
[PubMed:39569049] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

González-Montalvo MA, Sorescu JM, Baltes G, Juárez O, Tuz K
The respiratory chain of Klebsiella aerogenes in urine-like conditions: critical roles of NDH-2 and bd-terminal oxidases.
Front Microbiol: 2024, 15;1479714
[PubMed:39568993] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Scott S, Ragavan MI, Mickievicz E, Handrinos A, Amodei J, Chang JC, Balaban Z, Duplessis V, DeGue S, Villaveces A, Miller E, Randell KA
Pediatricians' Practices and Desired Resources for Addressing Intimate Partner Violence.
Partner Abuse: 2024 Oct, 15(4);550-570
[PubMed:39568864] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Scherrens AL, Jacobs A, Beernaert K, Pardon K, Raemdonck E, Fallon M, Cresswell K, Faric N, Williams R, Lundeby T, Hjermstad MJ, Deliens L, Kaasa S
Integrating patient-centred and tumour-centred cancer care: the EU-MyPath implementation project offers an innovative digital solution with care pathways.
Palliat Care Soc Pract: 2024, 18;26323524241296143
[PubMed:39568798] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Luque-Reca O, Marchena-Giráldez C, Carbonell-Colomer M, Bewernick C, Bernabéu-Brotóns E
Social Aspects of Problematic Smartphone Use: Development and Validation of the PSSNUS and Mental Health Implications for Spanish Youth.
Psychol Res Behav Manag: 2024, 17;3919-3942
[PubMed:39568754] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Maor M, Shoenfeld Y
Conflicting interpretations and FDA reputation: the case of post-market surveillance of breast implants.
Front Med (Lausanne): 2024, 11;1475992
[PubMed:39568744] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Saeki H, Fueki K, Maeda N
Enhancing monoclonal antibody production efficiency using CHO-MK cells and specific media in a conventional fed-batch culture.
Cytotechnology: 2025 Feb, 77(1);1
[PubMed:39568575] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Budha B, Subedi S, Sedhai S, Pandey U, Khadka A, Thapa S, Yadav A, Soti N, Sedain G
Subdural Empyema in a 13-Year-Old Male With History of Head Trauma: A Case Report.
Clin Case Rep: 2024 Nov, 12(11);e9601
[PubMed:39568529] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Leow K, Alvis LTC, Yuen BEC, Cheng L, Chiam S, Razak SNBA, Evans GB, Koh K, Lim IJ, Phan TT, Wong KL
Addressing the Peri-Wound Intact Skin of Hard-To-Heal Diabetic Foot Ulcers With Topical Red Deer Conditioned Media (PTT-6(TM)) Skin Conditioner: A Case Series on Clinical Efficacy.
Health Sci Rep: 2024 Nov, 7(11);e70211
[PubMed:39568446] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Oz IT, Cona G
Impact of Indirect Trauma and Disaster Media Exposure on Psychological States and Temporal Processes: The Case of 2023 Turkey Earthquakes.
Clin Psychol Psychother: 2024 Nov-Dec, 31(6);e70008
[PubMed:39568373] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Wiedicke A, Stehr P, Rossmann C
Portrayal of risk information and its impact on audiences' risk perception during the Covid-19 pandemic: A multi-method approach.
Risk Anal: 2024 Nov 20;
[PubMed:39568307] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Wang Y, Zhao L, Luo YQ, Liu L, Li Y, Yao X, Ju J, Jiang L
Ultra-Fast, Unidirectional Water Absorption on Wood Ear.
Adv Mater: 2024 Nov 20;e2413364
[PubMed:39568248] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Koning E, Chu EM, Brietzke E
The historical opposition to psychedelic research and implications for credibility in psychiatry.
CNS Spectr: 2024 Nov 21;1-6
[PubMed:39568211] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Toraman Turk S, Stone L, Bouvay K, Lew S, Juliani K, Tobler J, Ahrens K, Schnadower D
Caregiver Perspectives and Preferences Regarding Timely Access to Unscheduled Acute Care in Paediatric Urgent Care Centers: A Qualitative Evaluation of Save My Spot Tool.
J Adv Nurs: 2024 Nov 20;
[PubMed:39568172] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hendawy M, Abouzid M, Gamal A, Ghanayem A, Amer M, Tanashat M, Eltewacy NK, Mohamed MM, Nada EA, Ibrahim IA
Psychological distress among students in Egypt and Jordan during the initial months of the Gaza war.
BMC Psychol: 2024 Nov 20, 12(1);678
[PubMed:39568052] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Saloner B, Sugarman OK, Byrne L, Harris S, Reid MC, Shah H, Hulsey E, Hurst A, Kerins L, King D, Sherman S, Kaner E, Heller D, Bandara S
Experiences of the changing illicit drug supply among racial and ethnic minoritized people in three US states: a qualitative study.
Harm Reduct J: 2024 Nov 20, 21(1);205
[PubMed:39567985] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Farahani MA, Nargesi S, Saniee N, Dolatshahi Z, Heidari Beni F, Shariatpanahi S
Factors affecting nurses retention during the COVID-19 pandemic: a systematic review.
Hum Resour Health: 2024 Nov 20, 22(1);78
[PubMed:39567984] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Shahrul AI, Pauzzi ER, Abas NDA, Yahya NA, Khan KAM, Nor MM
To assess the knowledge, awareness, and perception of non-dentists offering orthodontic treatment among the Malaysian young adult population.
BMC Public Health: 2024 Nov 20, 24(1);3224
[PubMed:39567923] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Gu L, Deng Y, Zhou Y, Wang W, Ren D, Xu J
Efficacy Analysis of Endoscopic Type 1 Tympanoplasty for Chronic Suppurative Otitis Media with Otomycosis.
Ear Nose Throat J: 2024 Nov 20;1455613241300891
[PubMed:39567885] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Tao BK, Alotaibi F, McAlpine A
Ceftazidime-Cefazolin Empiric Therapy for Pediatric Gradenigo Syndrome.
Ann Otol Rhinol Laryngol: 2024 Nov 20;34894241301289
[PubMed:39567876] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Sansone A, Mollaioli D, Colonnello E, Ciocca G, Limoncin E, Jannini TB, Pesce F, Jannini EA
Perception of orgasmic intensity changes between clitorally and vaginally activated orgasm: a psychometric analysis using the Orgasmometer scale.
Int J Impot Res: 2024 Nov 20;
[PubMed:39567673] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Nagaraja KV, Shagolshem S, Kanabar B, Kedia A, Abdulrahman A, Prakash C, Umeshaiah M, Chandan K
Lie symmetry analysis on heat and mass transport aspects of rate type fluid flow with waste discharge concentration: Keller Box approach.
Sci Rep: 2024 Nov 20, 14(1);28803
[PubMed:39567636] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Tomita M, Hirose S, Nakamura T, Funamoto K
pH-Dependent migratory behaviors of neutrophil-like cells in a microfluidic device with controllability of dissolved gas concentrations.
Sci Rep: 2024 Nov 20, 14(1);28730
[PubMed:39567568] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Mousapour MS, Simjoo M, Chahardowli M, Shaker Shiran B
Dynamics of HPAM flow and injectivity in sandstone porous media.
Sci Rep: 2024 Nov 20, 14(1);28720
[PubMed:39567566] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Narayan RR, Fleming AM, Gunder M, Zafar SN, Abdelsattar Z, Bilir E, Tran T, Pu T, Friedman L, McMasters KM, Ahmad SA, Annals of Surgical Oncology Social Media Committee
ASO Visual Abstract: Reflections from the Annals of Surgical Oncology Social Media Committee: The Impact of Promoting Surgical Science Online.
Ann Surg Oncol: 2024 Nov 20;
[PubMed:39567435] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Vezina B, Cooper HB, Wisniewski JA, Parker MH, Jenney AWJ, Holt KE, Wyres KL
Wild-Type Domestication: Loss of Intrinsic Metabolic Traits Concealed by Culture in Rich Media.
Microb Ecol: 2024 Nov 21, 87(1);144
[PubMed:39567391] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kong X, Liang Y, Guo Z, Lin T, Liu S, Liu Z, Liu T, Cheng JP
Determination of pKa values of C-H bonds in polar fluorinated arenes referred to a new CF3SO2-substituted anchor compound.
ChemSusChem: 2024 Nov 20;e202402041
[PubMed:39567253] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kim YE, Kim JS, Shin MJ, Lee SY, Kim DK, Lee NK, Kwon YW, Choi KU, Suh DS, Kim BS, Jeong S, Kim JH
Identification of CD109 in the extracellular vesicles derived from ovarian cancer stem-like cells.
BMB Rep: 2024 Nov 21;
[PubMed:39567205] [WorldCat.org: ISSN ESSN ] ( a)

Higashino M, Sugano K
Comparison of Phosphate and Bicarbonate Buffer Solutions as Dissolution Test Media for Predicting Bioequivalence of Febuxostat Formulation.
Chem Pharm Bull (Tokyo): 2024, 72(11);989-995
[PubMed:39566972] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Bino T, Goto Y, Maryu G, Arakawa K, Aoki K
Possible roles of CAHS proteins form Tardigrade in osmotic stress tolerance in mammalian cells.
Cell Struct Funct: 2024 Nov 19;
[PubMed:39566968] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Xia S, Song W
Controls on microbially-induced carbonate precipitation in geologic porous media.
Sci Total Environ: 2024 Nov 18;177647
[PubMed:39566618] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Yao S, Chen Y, Zhang X, Dong Z
Enhanced corrosion resistance and biofilm inhibition of TC4 with slight Cu addition against marine Pseudomonas aeruginosa.
Bioelectrochemistry: 2024 Nov 19, 162;108852
[PubMed:39566251] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Haque MT, Robles MEL, Vispo C, Oh Y, Kim LH
Evaluating factors affecting soil organic carbon retention in sustainable stormwater nature - based technologies.
J Environ Manage: 2024 Nov 19, 372;123370
[PubMed:39566214] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Chhetri G, Kim HJ, Jeon JM, Yoon JJ
Isolation of Massilia species capable of degrading Poly(3-hydroxybutyrate) isolated from eggplant (Solanum melongena L.) field.
Chemosphere: 2024 Nov 19, 368;143776
[PubMed:39566202] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Orusa A, Wahlquist A, Lawson D, Riaz O, Mitchell J, Tafesse Y, Pettyjohn S
COVID-19 knowledge, attitudes, and behaviors of STEM vs. non-STEM college students in Central Appalachia in 2021, a student-led project.
J Am Coll Health: 2024 Nov 20;1-5
[PubMed:39566045] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Petris PC, Teverovskiy G, Ross R, Sweere AJM, Handgraaf JW
Coarse-Grained Modeling of the Water/Alkane Wetting and Dewetting Processes on Fluorinated Coatings.
Langmuir: 2024 Nov 20;
[PubMed:39566037] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Oliveira MD, Caixeta A
Ultra-low contrast strategy for routine coronary procedures via distal transradial access: real-world experience with consecutive all-comers patients from the DISTRACTION registry.
J Invasive Cardiol: 2024 Nov 15;
[PubMed:39565945] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hagita N, Kanai R, Ishiguro H, Minamizawa K, Arai F, Shimpo F, Matsumura T, Yamanishi Y
Cybernetic avatars: Teleoperation technologies from in-body monitoring to social interaction.
Sci Robot: 2024 Nov 20, 9(96);eadg1842
[PubMed:39565866] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Epstein R
The Video Manipulation Effect (VME): A quantification of the possible impact that the ordering of YouTube videos might have on opinions and voting preferences.
PLoS One: 2024, 19(11);e0303036
[PubMed:39565735] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Miao S, Sardharwalla A, Perkin S
Ion Diffusion Reveals Heterogeneous Viscosity in Nanostructured Ionic Liquids.
J Phys Chem Lett: 2024 Nov 20;11855-11861
[PubMed:39565683] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Duan J, Li Q, Yin Z, Zhen S, Cao W, Yan S, Zhang Y, Wu Q, Zhang W, Liang F
Outdoor Artificial Light at Night and Insomnia-Related Social Media Posts.
JAMA Netw Open: 2024 Nov 4, 7(11);e2446156
[PubMed:39565624] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lant JT, Frasheri J, Kwon T, Tsang CMN, Li BB, Decombe S, Sklavounos AA, Akbari S, Wheeler AR
A multimodal digital microfluidic testing platform for antibody-producing cell lines.
Lab Chip: 2024 Nov 20;
[PubMed:39565292] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Henes A, Curry L, Farrelly M, Guillory J, Crichton A, Saunders MK, MacMonegle A, Mekos D, Zhao X, Nonnemaker J, Guo M, Wagner DE
Generating campaign awareness with digital media: exploring factors associated with awareness of and receptivity to FDA's Fresh Empire tobacco prevention campaign.
Nicotine Tob Res: 2024 Nov 20;
[PubMed:39565279] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Khongthongdam M, Phetruen T, Chanarat S
Development of ptxD/Phi as a new dominant selection system for genetic manipulation in Cryptococcus neoformans.
Microbiol Spectr: 2024 Nov 20;e0161824
[PubMed:39565132] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Bai J, Zhang Y, Wang F, Gan L, Zhao D, Shu J
Peritoneal dialysis-related complication: Can diagnostic accuracy be achieved at low iodinated contrast media dose using dual-layer spectral detector CT?
Clin Nephrol: 2024 Nov 20;
[PubMed:39565076] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Glatz C, Suileman M, Thomas JS, Tran P, Shah SS, Wray CM
From rounds to retweets: A digital media fellowship perspective.
J Hosp Med: 2024 Nov 20;
[PubMed:39565009] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kakiuchi R, Sakurai Y, Manabe H, Yamaguchi J, Hirai T, Nakamura Y, Fujii S
Pickering Emulsions Stabilized with Millimeter-Sized Polymer Plates.
Langmuir: 2024 Nov 20;
[PubMed:39564963] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Hanaya K, Taguchi K, Wada Y, Kawano M
One-Step Maleimide-Based Dual Functionalization of Protein N-Termini.
Angew Chem Int Ed Engl: 2024 Nov 20;e202417134
[PubMed:39564713] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

O'Mari O, Yang MY, Goddard W, Vullev VI
How Rigid Are Anthranilamide Molecular Electrets?
J Phys Chem B: 2024 Nov 20;
[PubMed:39564657] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lin MC, Silva DE
Potential Harmful Behavior Toward Older Family Members: Applying a Double-ABCX Model to Examine Problematic Family Caregiving.
Int J Aging Hum Dev: 2024 Nov 20;914150241297331
[PubMed:39564616] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Abrajano M, Garcia M, Pope A, Vidigal R, Tucker JA, Nagler J
How reliance on Spanish-language social media predicts beliefs in false political narratives amongst Latinos.
PNAS Nexus: 2024 Nov, 3(11);pgae442
[PubMed:39564573] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Stein J, Keuschnigg M, van de Rijt A
Partisan belief in new misinformation is resistant to accuracy incentives.
PNAS Nexus: 2024 Nov, 3(11);pgae506
[PubMed:39564569] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Heilmeier U, Feldmann D, Leynes A, Seng M, Jandova I, Keute M, Kollert F, Voll RE, Finzel S
Chronic low-grade inflammation in patients with systemic sclerosis is associated with increased risk for arteriosclerotic cardiovascular disease.
Front Med (Lausanne): 2024, 11;1446268
[PubMed:39564499] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Zilinsky J, Theocharis Y, Pradel F, Tulin M, de Vreese C, Aalberg T, Cardenal AS, Corbu N, Esser F, Gehle L, Halagiera D, Hameleers M, Hopmann DN, Koc-Michalska K, Matthes J, Schemer C, Štětka V, Strömbäck J, Terren L, Splendore S, Stanyer J, Stępińska A, Van Aelst P, Zoizner A
Justifying an Invasion: When Is Disinformation Successful?
Polit Commun: 2024, 41(6);965-986
[PubMed:39564356] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Jose J, Chaudhary A, Ghosh A, Goel S
Youthful Choices: A Secondary Analysis of the NFHS-5 Data to Examine Tobacco Use in Indian Adolescent Girls and Young Women.
Indian J Psychol Med: 2024 Mar 25;02537176241233186
[PubMed:39564285] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Ghosh A, George BB, Vij J, Pillai RR, Soundappan K, Sharma M, Basu D
Understanding Alcohol and Illicit Drug Use in Young College Students: A Qualitative Work from India Based on Social Norms Theory.
Indian J Psychol Med: 2024 Oct 1;02537176241283381
[PubMed:39564254] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Patel SH, Desai ND, Shah SH
Sexual Knowledge, Attitude and Behaviors of Medical Students: A Cross-sectional Study.
Indian J Psychol Med: 2024 Sep 30;02537176241275554
[PubMed:39564244] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Naggar AE
Exploring parental use of social media among autism spectrum disorder families in the UAE: perspectives and challenges in fostering social inclusion.
Int J Dev Disabil: 2024, 70(6);1092-1101
[PubMed:39564194] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Cochrane S, Saib O, Sheffield D
Use of serum-free media for peripheral blood mononuclear cell culture and the impact on T and B cell readouts.
Front Toxicol: 2024, 6;1462688
[PubMed:39563982] [WorldCat.org: ISSN ESSN ] [DOI] ( )

O'Hagan LA
A taste of Nordic freedom: The problematic marketing of nicotine pouches in the United Kingdom.
Nordisk Alkohol Nark: 2024 Sep 3;14550725241270227
[PubMed:39563974] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Morris C, Price C, Nerlich B
Biochar in the UK Print News Media: Issue Frames and Their Implications for Opening up Debate About Land-based Greenhouse Gas Removal.
Environ Commun: 2024, 18(8);1168-1185
[PubMed:39563916] [WorldCat.org: ISSN ESSN ] [DOI] ( )

England EE, Pratt CJ, Elshahed MS, Youssef NH
Evaluating the impact of redox potential on the growth capacity of anaerobic gut fungi.
FEMS Microbes: 2024, 5;xtae033
[PubMed:39563712] [WorldCat.org: ISSN ESSN ] [DOI] ( )

Duffin RN, Kelderman JTA, Herdman ME, Andrews PC
Highly selective organo-gallium hydroxamate mediated inhibition of antibiotic resistant Klebsiella pneumoniae.
Dalton Trans: 2024 Nov 20;
[PubMed:39563652] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Kogan M I, Medvedev V L, Naboka Yu L, Ivanov S N, Palaguta G A, Arkhipenko M V
[Microbial spectrum of urine before and after transurethral procedures on the prostate in patients with postoperative urinary tract infections].
Urologiia: 2024 May, (2);5-10
[PubMed:39563532] [WorldCat.org: ISSN ESSN ] ( p)

Zhu S, Wang M, Mao Y, Wang J, Ding J, Liu G, Zhang W
Unveiling the effect of codoping in strontium ferrite for oxygen evolution in alkaline media.
Chem Commun (Camb): 2024 Nov 20;
[PubMed:39563511] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lou H, Li Y, Wu Y, Hu Y, Zhang L
Infection Status, Etiological Analysis of Aeromonas Spp. in Foodborne Diarrhea Patients from 2019 to 2023 in Wenzhou.
Foodborne Pathog Dis: 2024 Nov 20;
[PubMed:39563500] [WorldCat.org: ISSN ESSN ] [DOI] ( a)

Lamarche J, Nissim R, Avery J, Wong J, Maheu C, Lambert SD, Laizner AM, Jones J, Esplen MJ, Lebel S
It is time to address fear of cancer recurrence in family caregivers: protocol for the feasibility and acceptability of a randomized pilot study of the online version of the Family Caregiver-Fear Of Recurrence Therapy (FC-FORT).
Pilot Feasibility Stud: 2024 Nov 19, 10(1);143
[PubMed:39563465] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Huang J, Guo H
When a bleak future comes closer: interaction effects of emotion and temporal distance framing in climate change communication.
BMC Psychol: 2024 Nov 20, 12(1);677
[PubMed:39563456] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Kay WT, O'Neill P, Gurr SJ, Fones HN
Long-term survival of asexual Zymoseptoria tritici spores in the environment.
BMC Biol: 2024 Nov 19, 22(1);265
[PubMed:39563388] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Erden Y, Aydın Kahraman H, Çiftçi B
Harnessing the power of social media: transforming nursing education for unmatched academic success.
BMC Nurs: 2024 Nov 19, 23(1);847
[PubMed:39563361] [WorldCat.org: ISSN ESSN ] [DOI] ( e)

Lund L, Brautsch LAS, Hoeeg D, Pedersen NH, Thomsen LT, Larsen MN, Krustrup P, Damsgaard CT, Toft U, Krølner RF
Feasibility and acceptability of school-based intervention components to promote healthy weight and well-being among 6-11-year-olds in Denmark: mixed methods findings from the Generation Healthy Kids feasibility study.
BMC Public Health: 2024 Nov 19, 24(1);3208
[PubMed:39563295] [WorldCat.org: ISSN ESSN ] [DOI] ( e) 

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Ihmels JH, Bergmann S
Challenges and prospects in the analysis of large-scale gene expression data.
Brief Bioinform: 2004 Dec, 5(4);313-27
[PubMed:15606968] [WorldCat.org: ISSN ESSN ] [DOI] ( p)

Ihmels J, Bergmann S, Barkai N
Defining transcription modules using large-scale gene expression data.
Bioinformatics: 2004 Sep 1, 20(13);1993-2003
[PubMed:15044247] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Similarities and differences in genome-wide expression data of six organisms.
PLoS Biol: 2004 Jan, 2(1);E9
[PubMed:14737187] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Bergmann S, Ihmels J, Barkai N
Iterative signature algorithm for the analysis of large-scale gene expression data.
Phys Rev E Stat Nonlin Soft Matter Phys: 2003 Mar, 67(3 Pt 1);031902
[PubMed:12689096] [WorldCat.org: ISSN ESSN ] [DOI] ( o)

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N
Revealing modular organization in the yeast transcriptional network.
Nat Genet: 2002 Aug, 31(4);370-7
[PubMed:12134151] [WorldCat.org: ISSN ESSN ] [DOI] ( o)


<biblio>

  1. Kutalik2008NB pmid=18464786 // PDF
  2. Ihmels2004 pmid=15606968 // PDF
  3. Ihmels2004a pmid=15044247 // PDF
  4. Bergmann2004 pmid=14737187 // PDF
  5. Bergmann2003 pmid=12689096 //PDF
  6. Ihmels2002 pmid=12134151 // PDF

</biblio>

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