Difference between revisions of "Notebook"
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== 2016-06-23 == | == 2016-06-23 == | ||
*dockerization | *dockerization | ||
| + | **[http://containertutorials.com/alpine/get_started.html Alpine]: learning a few more tricks. | ||
** [https://docs.docker.com/get-started/ Docker guide] | ** [https://docs.docker.com/get-started/ Docker guide] | ||
** Created a successful hello world Octave container | ** Created a successful hello world Octave container | ||
| Line 18: | Line 19: | ||
** [https://www.youtube.com/watch?v=hnxI-K10auY creating your first Dockerfile] | ** [https://www.youtube.com/watch?v=hnxI-K10auY creating your first Dockerfile] | ||
*** [https://docs.docker.com/engine/reference/builder/ dockerfile] | *** [https://docs.docker.com/engine/reference/builder/ dockerfile] | ||
| − | *** [https://docs.docker.com/samples/alpine/ Alpine] minimal Linux image (5MB) | + | *** [https://docs.docker.com/samples/alpine/ Alpine] running a minimal Linux image (5MB) |
***[https://developer.atlassian.com/blog/2015/08/minimal-java-docker-containers/ minimal Java image] | ***[https://developer.atlassian.com/blog/2015/08/minimal-java-docker-containers/ minimal Java image] | ||
Revision as of 10:07, 23 June 2017
Contents
2016-06-23
- dockerization
- Alpine: learning a few more tricks.
- Docker guide
- Created a successful hello world Octave container
- PASCAL: Introduction [TODO]
- TOCSY
- [1] [TODO]
2016-06-22
- dockerization
- Created a hello world Java container
- Sven's research proposal: detailed research plan
2016-06-21
- dockerization
- images vs containers: create a docker image which runs as a container
- boot2docker if you work on a mac
- creating your first Dockerfile
- dockerfile
- Alpine running a minimal Linux image (5MB)
- minimal Java image
2016-06-19/20
- Metabomatching: feature Import Metabolite Associations
- Added a parameter to out file: "kegg_known_x_1"
- Fixed associated_snips: the tag can be repeated, the keggid must be unique.
- Read loma into matrix in one go rather than iterating over each line of the file.
2016-06-12/15
Metabolomics: from data to publication
2016-06-07
- Preparing for SIB's "Metabolomics: from data to publication"
- LC-MS raw data
- Multivariate analysis
- In Situ Metabolomics
- R
- intro
- bnlearn R package (journal club)
- Open-ended brainstorming with Rosanna
2016-06-06
- Metabomatching: adding feature Import Metabolite Associations
- done: waiting for code review w/ Rico
- Bayesian Networks: background reading for journal club
2016-06-02
setsid [program]to fork a process
- Metabomatching: adding feature Import Metabolite Associations
- creating functions
- looping through structures
2016-06-01
- p-values vs. Bayes factors with Marco and Daniele
- Q-Q plots with Reyhan
- GIT and matlab
- "From Bench to Market" @ EPFL
