Difference between revisions of "Genome Wide Association Studies"
| Line 16: | Line 16: | ||
or using | or using | ||
[http://www.sph.umich.edu/csg/abecasis/mach MACH] and | [http://www.sph.umich.edu/csg/abecasis/mach MACH] and | ||
| − | [http://mga.bionet.nsc.ru/%7Eyurii/ABEL | + | [http://mga.bionet.nsc.ru/%7Eyurii/ABEL ProbABEL]. |
Our own software for association testing using uncertain genotypes is | Our own software for association testing using uncertain genotypes is | ||
Revision as of 14:47, 5 February 2009
Some people in our group work on genome wide association studies (GWAS).
Recommended reading
For an introduction to GWAS, with an emphasis on human studies, you could start with a nice tutorial article BaldingTutorial, and a review of more recent issues McCarthyReview. There is also a nice review about approaches for rodent studies FlintReview.
Statistical Methodology
Software
Many statistical methods are implemented in PLINK.
More sophisticated model based genotype imputation and association testing can be performed using IMPUTE and SNPTEST, or using MACH and ProbABEL.
Our own software for association testing using uncertain genotypes is QUICKTEST.
<biblio>
- BaldingTutorial pmid=16983374
- McCarthyReview pmid=18398418
</biblio>
